Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48505 * 109.46765 * 274.97647 * 3 2 1 5 5 H 1.48497 * 109.47346 * 34.98175 * 3 2 1 6 6 H 1.48503 * 109.47265 * 154.98171 * 3 2 1 7 7 C 1.40044 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00446 * 186.15170 * 7 2 1 9 9 C 1.46379 * 119.99750 * 6.15834 * 7 2 1 10 10 O 1.21682 * 119.99788 * 353.93684 * 9 7 2 11 11 N 1.34778 * 120.00109 * 173.93335 * 9 7 2 12 12 C 1.46496 * 119.99905 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47152 * 180.02562 * 12 11 9 14 14 C 1.38263 * 119.99042 * 260.00464 * 13 12 11 15 15 C 1.38199 * 120.01098 * 179.70133 * 14 13 12 16 16 C 1.38356 * 119.98764 * 0.27217 * 15 14 13 17 17 Br 1.89097 * 120.00730 * 180.02562 * 16 15 14 18 18 C 1.38305 * 119.98070 * 0.02562 * 16 15 14 19 19 C 1.38225 * 119.99257 * 80.25170 * 13 12 11 20 20 C 1.50708 * 119.99162 * 0.02562 * 19 13 12 21 21 F 1.39901 * 109.47053 * 180.27488 * 20 19 13 22 22 F 1.39896 * 109.47088 * 300.27700 * 20 19 13 23 23 F 1.39905 * 109.46787 * 60.27799 * 20 19 13 24 24 H 0.96999 * 120.00009 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99545 * 0.02562 * 11 9 7 26 26 H 1.08995 * 109.47198 * 60.00928 * 12 11 9 27 27 H 1.09000 * 109.47383 * 300.00442 * 12 11 9 28 28 H 1.07992 * 119.99663 * 359.97010 * 14 13 12 29 29 H 1.07996 * 120.01038 * 180.29521 * 15 14 13 30 30 H 1.07992 * 120.00270 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3949 5 1 1.4947 2.6200 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2154 0.1008 9 6 1.2815 -2.4769 -0.1349 10 8 0.0647 -2.4827 -0.1369 11 7 1.9612 -3.6342 -0.2574 12 6 1.2351 -4.8994 -0.3923 13 6 2.2200 -6.0337 -0.5115 14 6 2.5158 -6.5646 -1.7534 15 6 3.4236 -7.6007 -1.8639 16 6 4.0324 -8.1105 -0.7308 17 35 5.2752 -9.5277 -0.8813 18 6 3.7316 -7.5832 0.5119 19 6 2.8238 -6.5465 0.6213 20 6 2.4964 -5.9714 1.9753 21 9 3.2303 -6.6447 2.9578 22 9 2.8259 -4.6120 1.9967 23 9 1.1289 -6.1239 2.2284 24 1 -0.4850 0.8400 -0.0004 25 1 2.9312 -3.6295 -0.2554 26 1 0.6095 -4.8659 -1.2843 27 1 0.6080 -5.0539 0.4857 28 1 2.0405 -6.1667 -2.6378 29 1 3.6582 -8.0122 -2.8344 30 1 4.2069 -7.9805 1.3965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -159.445672 kcal Electronic energy + Delta-G solvation = -22951.689443 eV Core-core repulsion = 18764.272137 eV Total energy + Delta-G solvation = -4187.417305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 350.982 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.00222 -47.57386 -47.33115 -39.90790 -37.24102 -34.24707 -32.59954 -32.21146 -31.82920 -29.86611 -27.02813 -26.09382 -24.68006 -22.61772 -21.42712 -19.75434 -18.37570 -18.24686 -18.23213 -17.33109 -16.07372 -15.76064 -15.34362 -14.92768 -14.65552 -14.32753 -14.21673 -14.00419 -13.83663 -13.68086 -13.53203 -13.46581 -13.16389 -13.07719 -12.65590 -12.25207 -11.77575 -11.42709 -11.33727 -11.13514 -11.06195 -10.88977 -10.63067 -10.45932 -10.22826 -9.54969 -9.04155 -8.85715 -7.64336 -7.59870 -6.21025 -4.64747 0.54135 0.77601 1.22866 2.73269 3.04667 3.13856 3.21413 3.25210 3.76409 4.10520 4.11419 4.47902 4.49850 4.55487 4.58288 4.68579 4.93167 5.03859 5.15569 5.41716 5.61524 5.65628 5.78795 5.87649 6.16526 6.33213 6.36345 7.43278 7.85215 7.99181 8.30355 9.01548 9.46295 10.56953 10.74935 Molecular weight = 350.98amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.003106 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.436214 B = 9011.777099 C = 9482.444116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.558 3.442 10 O -0.579 6.579 11 N -0.758 5.758 12 C 0.147 3.853 13 C -0.020 4.020 14 C -0.100 4.100 15 C -0.060 4.060 16 C -0.101 4.101 17 Br -0.043 7.043 18 C -0.046 4.046 19 C -0.167 4.167 20 C 0.508 3.492 21 F -0.183 7.183 22 F -0.154 7.154 23 F -0.171 7.171 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 -19.401 -2.177 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.461 6.461 11 N -0.415 5.415 12 C 0.023 3.977 13 C -0.021 4.021 14 C -0.120 4.120 15 C -0.080 4.080 16 C -0.180 4.180 17 Br 0.043 6.957 18 C -0.066 4.066 19 C -0.170 4.170 20 C 0.454 3.546 21 F -0.164 7.164 22 F -0.135 7.135 23 F -0.153 7.153 24 H 0.079 0.921 25 H 0.214 0.786 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.138 -19.802 -2.183 22.353 hybrid contribution 0.635 1.096 0.259 1.293 sum 10.773 -18.706 -1.924 21.672 Atomic orbital electron populations 1.70024 1.07066 1.27303 1.35182 1.25696 0.94599 1.00276 0.92601 0.86358 0.80286 0.81467 0.78653 1.19812 1.20445 1.18853 1.20843 0.94146 0.89310 1.53597 0.91328 1.18232 0.87110 0.82084 0.76326 1.90606 1.14053 1.86097 1.55360 1.46214 1.08634 1.04404 1.82210 1.20156 0.92160 0.82325 1.03103 1.20235 0.94654 0.95298 0.91914 1.21207 0.97626 0.95771 0.97368 1.21343 0.94025 0.94826 0.97800 1.21645 1.01383 0.99207 0.95776 1.96741 1.56508 1.43865 1.98615 1.20898 0.94774 0.93547 0.97408 1.19939 1.03366 1.00967 0.92698 1.18133 0.74739 0.77002 0.84770 1.93143 1.77460 1.80428 1.65401 1.93353 1.92047 1.31480 1.96581 1.93208 1.31811 1.95409 1.94823 0.92090 0.78579 0.91160 0.90995 0.83484 0.84030 0.83551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.86 11.85 55.55 0.66 -22.20 16 2 C 0.09 2.44 5.49 -17.37 -0.10 2.35 16 3 Si 0.91 20.08 29.56 -169.99 -5.03 15.05 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.54 -15.20 9.53 -35.63 -0.34 -15.54 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.56 15.61 7.74 -12.98 -0.10 15.51 16 10 O -0.58 -18.47 15.04 5.20 0.08 -18.39 16 11 N -0.76 -16.49 4.06 -62.91 -0.26 -16.75 16 12 C 0.15 2.71 5.01 -5.20 -0.03 2.68 16 13 C -0.02 -0.28 5.21 -104.62 -0.55 -0.83 16 14 C -0.10 -1.13 9.67 -39.59 -0.38 -1.51 16 15 C -0.06 -0.58 9.79 -39.55 -0.39 -0.97 16 16 C -0.10 -1.04 6.22 -39.51 -0.25 -1.29 16 17 Br -0.04 -0.38 33.70 -68.01 -2.29 -2.68 16 18 C -0.05 -0.53 9.17 -39.56 -0.36 -0.89 16 19 C -0.17 -2.28 5.37 -104.62 -0.56 -2.84 16 20 C 0.51 7.84 2.86 36.01 0.10 7.95 16 21 F -0.18 -2.54 15.97 2.25 0.04 -2.50 16 22 F -0.15 -2.79 14.87 2.25 0.03 -2.76 16 23 F -0.17 -2.86 15.37 2.25 0.03 -2.83 16 24 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 25 H 0.38 7.56 8.07 -40.82 -0.33 7.23 16 26 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 27 H 0.07 1.45 5.95 -51.93 -0.31 1.14 16 28 H 0.15 1.44 8.04 -52.49 -0.42 1.01 16 29 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.15 1.48 7.16 -52.49 -0.38 1.11 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -33.10 299.26 -6.99 -40.09 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -1.82 Total: 3.84 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.94 Total: 4.62 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.40 Total: -38.95 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.08 Total: -18.39 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.10 Total: -8.09 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.10 -6.99 -40.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.360 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds