Wall clock time and date at job start Tue Mar 31 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86806 * 119.99842 * 2 1 4 4 H 1.48501 * 109.46995 * 265.97680 * 3 2 1 5 5 H 1.48495 * 109.47112 * 25.97667 * 3 2 1 6 6 H 1.48498 * 109.46796 * 145.97858 * 3 2 1 7 7 C 1.40047 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00416 * 350.67911 * 7 2 1 9 9 C 1.46377 * 119.99789 * 170.67814 * 7 2 1 10 10 O 1.21694 * 120.00026 * 353.11146 * 9 7 2 11 11 N 1.34775 * 120.00037 * 173.10707 * 9 7 2 12 12 C 1.46498 * 120.00232 * 184.25009 * 11 9 7 13 13 C 1.50696 * 109.47194 * 270.00383 * 12 11 9 14 14 C 1.38237 * 119.99821 * 269.72309 * 13 12 11 15 15 C 1.38231 * 120.00032 * 179.79069 * 14 13 12 16 16 C 1.38239 * 119.99870 * 0.46272 * 15 14 13 17 17 C 1.38234 * 119.99842 * 359.77145 * 16 15 14 18 18 C 1.38232 * 120.00345 * 0.02562 * 17 16 15 19 19 C 1.46502 * 120.00152 * 4.25366 * 11 9 7 20 20 C 1.53004 * 109.46915 * 264.94272 * 19 11 9 21 21 O 1.42897 * 110.26726 * 294.72479 * 20 19 11 22 22 C 1.54348 * 110.30056 * 172.65365 * 20 19 11 23 23 C 1.54490 * 102.32570 * 267.25904 * 22 20 19 24 24 C 1.51376 * 105.21395 * 333.77358 * 23 22 20 25 25 C 1.38495 * 130.38975 * 197.11915 * 24 23 22 26 26 C 1.38100 * 120.21788 * 179.97438 * 25 24 23 27 27 C 1.38257 * 119.93016 * 0.02562 * 26 25 24 28 28 C 1.38103 * 119.93964 * 359.97438 * 27 26 25 29 29 C 1.38214 * 109.75773 * 17.11559 * 24 23 22 30 30 H 0.97000 * 119.99833 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47148 * 30.00284 * 12 11 9 32 32 H 1.09005 * 109.47402 * 149.99886 * 12 11 9 33 33 H 1.08003 * 120.00098 * 0.02562 * 14 13 12 34 34 H 1.08003 * 120.00398 * 180.25129 * 15 14 13 35 35 H 1.08005 * 119.99841 * 179.79450 * 16 15 14 36 36 H 1.08002 * 120.00056 * 180.02562 * 17 16 15 37 37 H 1.07993 * 120.00580 * 179.97438 * 18 17 16 38 38 H 1.08995 * 109.47365 * 144.93621 * 19 11 9 39 39 H 1.09004 * 109.47145 * 24.93596 * 19 11 9 40 40 H 0.96705 * 113.99795 * 59.30127 * 21 20 19 41 41 H 1.08997 * 110.82251 * 25.54877 * 22 20 19 42 42 H 1.09005 * 110.82037 * 149.10026 * 22 20 19 43 43 H 1.08996 * 110.34240 * 214.80660 * 23 22 20 44 44 H 1.09001 * 110.22624 * 92.67606 * 23 22 20 45 45 H 1.08002 * 119.89004 * 359.97438 * 25 24 23 46 46 H 1.08002 * 120.03728 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03042 * 180.02562 * 27 26 25 48 48 H 1.07994 * 119.89093 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5733 1.9974 -1.3966 5 1 1.3982 2.6758 0.6132 6 1 3.4931 1.4662 0.7833 7 6 2.0069 -1.2129 -0.0005 8 1 1.4777 -2.1421 0.1505 9 6 3.4562 -1.2211 -0.2059 10 8 4.0349 -0.1918 -0.5003 11 7 4.1497 -2.3686 -0.0689 12 6 5.6103 -2.3598 -0.1824 13 6 6.0038 -2.5884 -1.6190 14 6 6.2121 -3.8741 -2.0823 15 6 6.5689 -4.0841 -3.4012 16 6 6.7268 -3.0079 -4.2543 17 6 6.5232 -1.7220 -3.7897 18 6 6.1623 -1.5122 -2.4719 19 6 3.4430 -3.6248 0.1935 20 6 3.4164 -3.8898 1.7002 21 8 4.7415 -4.1094 2.1877 22 6 2.5216 -5.1077 2.0140 23 6 1.1522 -4.4483 2.2907 24 6 1.4745 -3.0477 2.7661 25 6 0.6913 -2.1270 3.4422 26 6 1.2062 -0.8905 3.7784 27 6 2.5074 -0.5696 3.4390 28 6 3.2900 -1.4863 2.7649 29 6 2.7754 -2.7270 2.4269 30 1 -0.4850 0.8401 -0.0004 31 1 5.9948 -1.3958 0.1507 32 1 6.0278 -3.1519 0.4393 33 1 6.0923 -4.7147 -1.4149 34 1 6.7276 -5.0888 -3.7643 35 1 7.0088 -3.1718 -5.2839 36 1 6.6462 -0.8812 -4.4563 37 1 6.0037 -0.5076 -2.1088 38 1 3.9572 -4.4431 -0.3104 39 1 2.4218 -3.5522 -0.1806 40 1 5.3438 -3.3678 2.0375 41 1 2.4645 -5.7777 1.1562 42 1 2.8821 -5.6362 2.8966 43 1 0.6171 -4.9970 3.0657 44 1 0.5605 -4.4103 1.3760 45 1 -0.3254 -2.3769 3.7072 46 1 0.5930 -0.1749 4.3059 47 1 2.9118 0.3968 3.7015 48 1 4.3065 -1.2350 2.5005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:08 Heat of formation + Delta-G solvation = -29.977920 kcal Electronic energy + Delta-G solvation = -33014.427004 eV Core-core repulsion = 28998.840401 eV Total energy + Delta-G solvation = -4015.586603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.35135 -39.02337 -37.68941 -36.63863 -34.25081 -34.07182 -32.76251 -31.51574 -30.57803 -30.16028 -28.63231 -27.65422 -26.95078 -24.95598 -23.99746 -22.23036 -22.10100 -21.22842 -20.45968 -19.80876 -19.24106 -17.10155 -16.79016 -16.49784 -15.94185 -15.57040 -15.19216 -14.95626 -14.80290 -14.64854 -14.50550 -14.19010 -13.68679 -13.37450 -13.10482 -13.09161 -12.85448 -12.59755 -12.42933 -12.28641 -12.24816 -12.07235 -11.74299 -11.70059 -11.57240 -11.30486 -11.07347 -11.00348 -10.96401 -10.87890 -10.62964 -10.50002 -10.32432 -10.23129 -9.66693 -9.37909 -8.96683 -8.61489 -8.55809 -8.02950 -7.91518 -7.79876 -7.49810 -6.56601 -4.72676 1.62493 1.72080 2.09462 2.18756 3.44294 3.50025 3.76442 3.93272 4.21060 4.33768 4.39347 4.58284 4.60540 4.84122 5.01504 5.11870 5.14140 5.24750 5.27968 5.39449 5.48405 5.50025 5.59813 5.64941 5.70405 5.72598 5.79140 5.86351 5.92400 5.97914 6.03705 6.10326 6.14236 6.20620 6.27265 6.31103 6.36114 6.39937 6.43418 6.69961 6.72787 6.81760 6.83416 6.93544 7.10756 7.15681 7.23304 7.31293 7.32439 7.56694 7.74934 7.85647 7.93333 8.34701 8.74072 9.14892 10.06229 10.43501 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005517 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.879837 B = 5073.986454 C = 6723.715270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.111 3.889 3 Si 0.956 3.044 4 H -0.286 1.286 5 H -0.328 1.328 6 H -0.257 1.257 7 C -0.510 4.510 8 H 0.089 0.911 9 C 0.552 3.448 10 O -0.614 6.614 11 N -0.626 5.626 12 C 0.153 3.847 13 C -0.090 4.090 14 C -0.112 4.112 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.089 4.089 19 C 0.109 3.891 20 C 0.156 3.844 21 O -0.560 6.560 22 C -0.102 4.102 23 C -0.079 4.079 24 C -0.085 4.085 25 C -0.100 4.100 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.064 4.064 29 C -0.088 4.088 30 H 0.278 0.722 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.371 0.629 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -8.820 2.212 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.108 4.108 3 Si 0.790 3.210 4 H -0.212 1.212 5 H -0.260 1.260 6 H -0.182 1.182 7 C -0.545 4.545 8 H 0.106 0.894 9 C 0.364 3.636 10 O -0.507 6.507 11 N -0.358 5.358 12 C 0.030 3.970 13 C -0.091 4.091 14 C -0.131 4.131 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.015 4.015 20 C 0.114 3.886 21 O -0.367 6.367 22 C -0.140 4.140 23 C -0.116 4.116 24 C -0.085 4.085 25 C -0.118 4.118 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.082 4.082 29 C -0.089 4.089 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.220 0.780 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.373 -8.842 2.245 11.128 hybrid contribution 0.319 1.411 -0.525 1.539 sum 6.692 -7.431 1.720 10.147 Atomic orbital electron populations 1.69557 1.07898 1.29544 1.38118 1.25603 0.94506 1.01513 0.89136 0.85377 0.78326 0.78009 0.79323 1.21231 1.26036 1.18239 1.20673 0.88790 0.95531 1.49524 0.89361 1.18323 0.88401 0.80454 0.76440 1.90182 1.71409 1.31694 1.57434 1.47599 1.03732 1.08140 1.76378 1.20225 0.83349 1.02168 0.91280 1.20441 0.97987 0.93025 0.97688 1.21023 0.99964 0.96372 0.95706 1.21019 1.01339 0.98426 0.94002 1.21052 1.01331 0.92989 0.99222 1.21147 1.00568 0.96801 0.95991 1.21295 0.96492 0.99845 0.93165 1.21929 0.99752 0.86784 0.93085 1.21333 0.81976 0.92160 0.93132 1.86476 1.21341 1.45314 1.83608 1.22263 0.93521 0.95881 1.02352 1.21019 0.96826 0.92382 1.01333 1.20139 0.94499 0.95679 0.98192 1.20287 0.98395 0.93525 0.99558 1.20760 0.95339 0.96026 1.00682 1.20765 0.94602 0.98377 0.99838 1.20189 0.99079 0.92209 0.96755 1.20495 0.95389 0.94946 0.98032 0.91205 0.89830 0.91185 0.86544 0.86704 0.86807 0.86626 0.85194 0.91668 0.88449 0.77962 0.90292 0.90167 0.91087 0.89925 0.87405 0.87137 0.87260 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.34 13.92 55.55 0.77 -21.57 16 2 C 0.11 2.99 5.52 -17.37 -0.10 2.89 16 3 Si 0.96 24.94 25.96 -169.99 -4.41 20.53 16 4 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 5 H -0.33 -8.35 7.11 56.52 0.40 -7.94 16 6 H -0.26 -6.90 6.41 56.52 0.36 -6.54 16 7 C -0.51 -13.11 7.09 -35.63 -0.25 -13.36 16 8 H 0.09 2.32 5.36 -52.49 -0.28 2.04 16 9 C 0.55 13.25 5.64 -12.99 -0.07 13.17 16 10 O -0.61 -16.23 10.87 5.19 0.06 -16.17 16 11 N -0.63 -12.05 2.01 -176.72 -0.35 -12.41 16 12 C 0.15 2.56 4.82 -5.20 -0.03 2.53 16 13 C -0.09 -1.49 5.46 -104.62 -0.57 -2.06 16 14 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 15 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 16 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 17 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 18 C -0.09 -1.57 9.59 -39.58 -0.38 -1.95 16 19 C 0.11 1.88 4.60 -4.04 -0.02 1.86 16 20 C 0.16 2.51 1.07 -90.74 -0.10 2.41 16 21 O -0.56 -8.67 12.71 -35.23 -0.45 -9.12 16 22 C -0.10 -1.41 6.33 -25.24 -0.16 -1.57 16 23 C -0.08 -1.15 6.77 -26.77 -0.18 -1.33 16 24 C -0.08 -1.52 5.68 -104.20 -0.59 -2.11 16 25 C -0.10 -1.80 10.04 -39.54 -0.40 -2.20 16 26 C -0.11 -2.02 10.05 -39.63 -0.40 -2.42 16 27 C -0.12 -2.27 10.05 -39.62 -0.40 -2.66 16 28 C -0.06 -1.25 7.36 -39.53 -0.29 -1.54 16 29 C -0.09 -1.62 3.05 -104.21 -0.32 -1.94 16 30 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 31 H 0.08 1.50 7.43 -51.93 -0.39 1.11 16 32 H 0.07 0.97 5.88 -51.93 -0.31 0.66 16 33 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.13 2.52 7.40 -52.49 -0.39 2.13 16 38 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.10 1.88 5.92 -51.93 -0.31 1.57 16 40 H 0.37 5.34 6.29 45.56 0.29 5.62 16 41 H 0.08 0.94 7.90 -51.93 -0.41 0.53 16 42 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 48 H 0.10 1.99 8.02 -52.49 -0.42 1.57 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -30.68 380.43 -10.51 -41.20 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.03 Total: 10.72 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -5.83 Total: -18.91 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.42 Total: -33.98 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.39 Total: -25.29 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.41 Total: 20.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.68 -10.51 -41.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.217 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds