Wall clock time and date at job start Tue Mar 31 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48494 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47394 * 300.00377 * 3 2 1 6 6 H 1.48502 * 109.46796 * 60.00733 * 3 2 1 7 7 C 1.40044 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00343 * 187.57559 * 7 2 1 9 9 C 1.46376 * 120.00195 * 7.56868 * 7 2 1 10 10 O 1.21691 * 119.99718 * 7.86787 * 9 7 2 11 11 N 1.34771 * 120.00178 * 187.86262 * 9 7 2 12 12 C 1.46509 * 120.00118 * 182.26873 * 11 9 7 13 13 C 1.50708 * 109.46903 * 83.87549 * 12 11 9 14 14 C 1.38229 * 119.99753 * 264.00260 * 13 12 11 15 15 C 1.38236 * 120.00020 * 180.34467 * 14 13 12 16 16 C 1.38233 * 119.99524 * 359.88921 * 15 14 13 17 17 C 1.38231 * 120.00530 * 0.08642 * 16 15 14 18 18 C 1.38227 * 119.99712 * 84.28052 * 13 12 11 19 19 C 1.46500 * 120.00294 * 2.26995 * 11 9 7 20 20 C 1.53002 * 109.47055 * 101.77074 * 19 11 9 21 21 O 1.42895 * 110.26781 * 66.36096 * 20 19 11 22 22 C 1.54348 * 110.30057 * 188.43384 * 20 19 11 23 23 C 1.54492 * 102.32227 * 145.20928 * 22 20 19 24 24 C 1.51369 * 105.21598 * 333.76720 * 23 22 20 25 25 C 1.38497 * 130.39062 * 197.12059 * 24 23 22 26 26 C 1.38103 * 120.21786 * 179.97438 * 25 24 23 27 27 C 1.38262 * 119.92875 * 0.02562 * 26 25 24 28 28 C 1.38097 * 119.93870 * 0.02562 * 27 26 25 29 29 C 1.38217 * 109.75666 * 17.12328 * 24 23 22 30 30 H 0.97001 * 120.00134 * 4.99909 * 1 2 3 31 31 H 1.08997 * 109.46904 * 323.87694 * 12 11 9 32 32 H 1.08997 * 109.46988 * 203.87296 * 12 11 9 33 33 H 1.07997 * 120.00377 * 0.28232 * 14 13 12 34 34 H 1.08001 * 120.00408 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.99861 * 180.10646 * 16 15 14 36 36 H 1.08002 * 120.00311 * 180.02562 * 17 16 15 37 37 H 1.07999 * 120.00422 * 359.69657 * 18 13 12 38 38 H 1.08999 * 109.47439 * 221.77500 * 19 11 9 39 39 H 1.09001 * 109.46740 * 341.77030 * 19 11 9 40 40 H 0.96694 * 114.00107 * 300.69906 * 21 20 19 41 41 H 1.09001 * 110.82162 * 263.49808 * 22 20 19 42 42 H 1.09001 * 110.82149 * 27.04678 * 22 20 19 43 43 H 1.08999 * 110.33936 * 214.80074 * 23 22 20 44 44 H 1.08999 * 110.30194 * 92.72170 * 23 22 20 45 45 H 1.08001 * 119.88941 * 359.97438 * 25 24 23 46 46 H 1.07994 * 120.03755 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.02622 * 179.97438 * 27 26 25 48 48 H 1.07996 * 119.89581 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7006 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8820 2.3963 1.2126 7 6 2.0069 -1.2128 -0.0005 8 1 3.0799 -1.2170 0.1228 9 6 1.2847 -2.4749 -0.1681 10 8 0.1007 -2.4657 -0.4492 11 7 1.9309 -3.6471 -0.0110 12 6 1.2204 -4.9100 -0.2274 13 6 1.2238 -5.2428 -1.6973 14 6 0.1405 -4.9024 -2.4855 15 6 0.1405 -5.2140 -3.8323 16 6 1.2249 -5.8641 -4.3911 17 6 2.3085 -6.2041 -3.6031 18 6 2.3078 -5.8937 -2.2560 19 6 3.3438 -3.6586 0.3760 20 6 3.4614 -3.9802 1.8672 21 8 3.0266 -5.3175 2.1210 22 6 4.9177 -3.7912 2.3425 23 6 4.7288 -3.2621 3.7817 24 6 3.3742 -2.5866 3.7820 25 6 2.8224 -1.6824 4.6742 26 6 1.5481 -1.1918 4.4679 27 6 0.8197 -1.6045 3.3676 28 6 1.3678 -2.5069 2.4773 29 6 2.6461 -2.9992 2.6820 30 1 -0.4850 0.8368 -0.0732 31 1 0.1921 -4.8126 0.1207 32 1 1.7177 -5.7062 0.3266 33 1 -0.7064 -4.3938 -2.0490 34 1 -0.7057 -4.9477 -4.4482 35 1 1.2257 -6.1060 -5.4437 36 1 3.1559 -6.7116 -4.0398 37 1 3.1543 -6.1593 -1.6402 38 1 3.8727 -4.4164 -0.2020 39 1 3.7822 -2.6802 0.1796 40 1 2.1110 -5.4892 1.8620 41 1 5.4511 -4.7417 2.3444 42 1 5.4346 -3.0568 1.7249 43 1 5.5102 -2.5427 4.0265 44 1 4.7397 -4.0881 4.4928 45 1 3.3907 -1.3599 5.5342 46 1 1.1208 -0.4865 5.1653 47 1 -0.1771 -1.2222 3.2049 48 1 0.7984 -2.8285 1.6178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:13 Heat of formation + Delta-G solvation = -9.622828 kcal Electronic energy + Delta-G solvation = -32757.183266 eV Core-core repulsion = 28742.479326 eV Total energy + Delta-G solvation = -4014.703940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.34551 -38.91247 -37.53745 -36.63165 -34.07364 -33.73991 -32.55941 -31.60339 -30.47367 -30.05249 -28.65789 -27.67468 -26.89507 -24.85804 -23.62333 -22.14276 -22.10309 -21.18268 -20.43413 -19.90599 -19.27877 -17.26124 -16.67087 -16.29755 -15.76865 -15.38248 -15.04509 -14.80134 -14.66929 -14.62459 -14.36475 -14.13717 -13.98410 -13.27249 -13.12577 -13.01028 -12.96016 -12.60758 -12.48726 -12.14048 -12.04877 -11.85919 -11.67127 -11.42697 -11.34366 -11.19932 -11.09140 -11.00433 -10.86501 -10.74978 -10.60987 -10.29109 -10.26050 -10.08813 -10.06402 -9.49736 -8.88496 -8.50940 -8.44140 -8.07608 -7.95080 -7.65446 -7.35859 -6.31257 -4.66181 1.73457 1.82633 1.99782 2.16335 3.08626 3.18765 3.21051 3.96984 4.16143 4.33877 4.45999 4.49533 4.66117 4.90205 5.05312 5.21260 5.22466 5.27119 5.35453 5.42786 5.48523 5.58242 5.65324 5.66806 5.69377 5.83011 5.88540 5.93567 5.96329 6.03040 6.08457 6.13871 6.23521 6.26776 6.35833 6.39410 6.44382 6.48921 6.52382 6.67144 6.82693 6.86700 6.91839 7.09358 7.11185 7.34022 7.38457 7.40851 7.42090 7.46818 7.74883 7.91092 8.03263 8.22673 8.97008 9.24068 10.44121 10.62561 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.009525 B = 0.005280 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.845128 B = 5301.321533 C = 7005.758452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.098 3.902 3 Si 0.891 3.109 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.569 3.431 10 O -0.574 6.574 11 N -0.640 5.640 12 C 0.151 3.849 13 C -0.086 4.086 14 C -0.086 4.086 15 C -0.127 4.127 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.111 4.111 19 C 0.102 3.898 20 C 0.158 3.842 21 O -0.558 6.558 22 C -0.105 4.105 23 C -0.075 4.075 24 C -0.095 4.095 25 C -0.133 4.133 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.045 4.045 29 C -0.119 4.119 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.373 0.627 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.116 0.884 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -7.980 2.230 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.377 3.623 10 O -0.457 6.457 11 N -0.377 5.377 12 C 0.027 3.973 13 C -0.088 4.088 14 C -0.105 4.105 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.130 4.130 19 C -0.024 4.024 20 C 0.116 3.884 21 O -0.368 6.368 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.095 4.095 25 C -0.151 4.151 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.063 4.063 29 C -0.120 4.120 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.223 0.777 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.134 0.866 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.992 -7.897 2.370 10.192 hybrid contribution -0.008 1.224 -0.372 1.280 sum 5.983 -6.672 1.998 9.182 Atomic orbital electron populations 1.69927 1.06816 1.27493 1.34952 1.25514 0.94445 0.99776 0.92436 0.86547 0.80938 0.82654 0.78235 1.18777 1.20201 1.20153 1.20925 0.94106 0.89346 1.52437 0.91286 1.17994 0.86399 0.81970 0.75940 1.90626 1.16051 1.86040 1.52989 1.48285 1.10016 1.05094 1.74279 1.20208 0.98940 0.87483 0.90629 1.20437 0.93936 0.96781 0.97612 1.21262 0.98849 0.96943 0.93445 1.21130 0.98471 0.99484 0.95456 1.21025 0.94442 1.00113 0.99191 1.20999 0.98287 1.01470 0.94169 1.20990 0.97769 0.99182 0.95028 1.22022 0.84709 1.03241 0.92380 1.21123 0.92613 0.80497 0.94135 1.86479 1.33895 1.28916 1.87465 1.22252 0.94306 1.01672 0.96098 1.20974 0.94099 0.98977 0.97135 1.20414 0.96152 0.97320 0.95640 1.20324 0.95874 0.99381 0.99503 1.20944 0.94612 0.99930 0.98148 1.21007 1.00209 0.98007 0.94349 1.21369 0.94155 0.93777 0.97008 1.20735 0.95264 0.99486 0.96495 0.92124 0.90268 0.91175 0.85283 0.86684 0.86928 0.86841 0.86683 0.92353 0.88198 0.77659 0.89987 0.89712 0.91205 0.90714 0.87473 0.87085 0.86559 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.89 11.93 55.55 0.66 -20.22 16 2 C 0.10 2.55 5.48 -17.37 -0.10 2.46 16 3 Si 0.89 19.73 29.57 -169.99 -5.03 14.70 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.53 -13.58 7.08 -35.63 -0.25 -13.83 16 8 H 0.07 1.70 5.71 -52.49 -0.30 1.40 16 9 C 0.57 14.05 4.20 -12.99 -0.05 14.00 16 10 O -0.57 -16.08 13.88 5.20 0.07 -16.01 16 11 N -0.64 -12.73 1.57 -176.71 -0.28 -13.01 16 12 C 0.15 2.65 4.74 -5.18 -0.02 2.62 16 13 C -0.09 -1.50 5.41 -104.63 -0.57 -2.07 16 14 C -0.09 -1.57 9.47 -39.59 -0.38 -1.95 16 15 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 16 C -0.13 -1.86 10.05 -39.59 -0.40 -2.26 16 17 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 18 C -0.11 -1.72 9.72 -39.58 -0.38 -2.10 16 19 C 0.10 1.79 4.76 -4.04 -0.02 1.77 16 20 C 0.16 2.61 1.07 -90.74 -0.10 2.51 16 21 O -0.56 -8.96 12.67 -35.23 -0.45 -9.41 16 22 C -0.11 -1.47 6.33 -25.24 -0.16 -1.63 16 23 C -0.07 -1.05 6.77 -26.77 -0.18 -1.23 16 24 C -0.10 -1.65 6.14 -104.21 -0.64 -2.29 16 25 C -0.13 -2.23 10.04 -39.54 -0.40 -2.63 16 26 C -0.12 -2.10 10.05 -39.62 -0.40 -2.50 16 27 C -0.12 -2.40 10.05 -39.62 -0.40 -2.80 16 28 C -0.05 -0.96 7.00 -39.54 -0.28 -1.24 16 29 C -0.12 -2.25 5.10 -104.21 -0.53 -2.78 16 30 H 0.27 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 32 H 0.07 1.03 5.41 -51.93 -0.28 0.75 16 33 H 0.13 2.57 7.70 -52.49 -0.40 2.17 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.59 7.95 -52.49 -0.42 1.17 16 38 H 0.06 0.92 8.03 -51.93 -0.42 0.51 16 39 H 0.10 1.92 5.30 -51.93 -0.28 1.64 16 40 H 0.37 5.64 5.89 45.56 0.27 5.91 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.08 1.10 7.82 -51.93 -0.41 0.70 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 48 H 0.15 3.46 3.85 -52.49 -0.20 3.26 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -30.40 380.65 -11.08 -41.48 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -5.76 Total: 17.36 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -6.04 Total: -20.63 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.39 Total: -33.24 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.37 Total: -25.42 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.40 -11.08 -41.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.858 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds