Wall clock time and date at job start Tue Mar 31 2020 05:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35999 * 116.99709 * 2 1 4 4 C 1.38536 * 120.07171 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.02890 * 179.97438 * 4 3 2 6 6 C 1.38377 * 120.15875 * 0.02562 * 5 4 3 7 7 Cl 1.73612 * 119.92723 * 180.02562 * 6 5 4 8 8 C 1.38299 * 120.14098 * 359.74158 * 6 5 4 9 9 C 1.38707 * 119.96824 * 0.50873 * 8 6 5 10 10 N 1.40157 * 120.07917 * 179.76494 * 9 8 6 11 11 C 1.34777 * 120.00178 * 335.22933 * 10 9 8 12 12 O 1.21594 * 119.99966 * 354.36148 * 11 10 9 13 13 N 1.34782 * 119.99734 * 174.35638 * 11 10 9 14 14 C 1.40183 * 119.99434 * 179.97438 * 13 11 10 15 15 C 1.40399 * 125.97522 * 0.02562 * 14 13 11 16 16 C 1.35247 * 107.86580 * 180.02562 * 15 14 13 17 17 N 1.34963 * 107.85994 * 0.25843 * 16 15 14 18 18 C 1.46496 * 125.97530 * 179.73886 * 17 16 15 19 19 C 1.50697 * 109.47300 * 125.00579 * 18 17 16 20 20 H 1.08008 * 119.99894 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00305 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00087 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00152 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46995 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47174 * 119.99532 * 23 21 19 26 26 H 1.48501 * 109.46910 * 239.99702 * 23 21 19 27 27 N 1.31210 * 125.96828 * 180.02562 * 14 13 11 28 28 H 1.09002 * 109.47110 * 59.99800 * 1 2 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47095 * 299.99736 * 1 2 3 31 31 H 1.08001 * 119.98472 * 0.02562 * 4 3 2 32 32 H 1.07991 * 119.92176 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.01797 * 180.25992 * 8 6 5 34 34 H 0.97007 * 119.99742 * 155.22069 * 10 9 8 35 35 H 0.96998 * 120.00090 * 0.02562 * 13 11 10 36 36 H 1.07997 * 126.06689 * 359.97438 * 15 14 13 37 37 H 1.08003 * 126.06776 * 180.02562 * 16 15 14 38 38 H 1.09005 * 109.47324 * 245.00462 * 18 17 16 39 39 H 1.09002 * 109.47186 * 5.00054 * 18 17 16 40 40 H 0.96998 * 120.00282 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3746 0.0005 5 6 1.9217 3.6059 0.0011 6 6 3.3035 3.6812 0.0005 7 17 4.0865 5.2307 0.0019 8 6 4.0620 2.5248 0.0049 9 6 3.4372 1.2864 -0.0009 10 7 4.2036 0.1129 -0.0015 11 6 5.4612 0.1296 -0.4860 12 8 5.8954 1.1344 -1.0157 13 7 6.2375 -0.9673 -0.3833 14 6 7.5453 -0.9501 -0.8877 15 6 8.1712 0.1361 -1.5200 16 6 9.4234 -0.2464 -1.8589 17 7 9.5864 -1.5265 -1.4637 18 6 10.7956 -2.3344 -1.6405 19 6 11.2404 -2.8719 -0.3047 20 1 10.6787 -2.6350 0.5869 21 6 12.3650 -3.6652 -0.2206 22 7 13.0492 -3.9532 -1.3061 23 14 12.9167 -4.3308 1.4354 24 1 11.9834 -3.8646 2.4921 25 1 12.9191 -5.8153 1.3962 26 1 14.2865 -3.8413 1.7341 27 7 8.3985 -1.9463 -0.8514 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2147 2.3190 0.0014 32 1 1.3330 4.5112 0.0019 33 1 5.1403 2.5859 0.0087 34 1 3.8290 -0.7112 0.3469 35 1 5.8910 -1.7689 0.0390 36 1 7.7305 1.1047 -1.7039 37 1 10.1606 0.3631 -2.3605 38 1 10.5826 -3.1649 -2.3136 39 1 11.5867 -1.7163 -2.0652 40 1 13.8401 -4.5116 -1.2470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101111.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:59 Heat of formation + Delta-G solvation = 51.439987 kcal Electronic energy + Delta-G solvation = -26933.698610 eV Core-core repulsion = 22777.554927 eV Total energy + Delta-G solvation = -4156.143683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31505 -40.50366 -39.55229 -37.91879 -36.47905 -35.09482 -34.77604 -33.36132 -31.15040 -30.41796 -29.80062 -29.28435 -27.62888 -26.64877 -24.01818 -22.87485 -22.59972 -21.64662 -20.39064 -19.97657 -18.81436 -18.10688 -17.63962 -16.58959 -16.52925 -16.47127 -16.17702 -15.66959 -15.46638 -15.06043 -14.67627 -14.48132 -14.33702 -13.97048 -13.91947 -13.59362 -12.92752 -12.79811 -12.50354 -12.37151 -12.31365 -12.22769 -11.82671 -11.77113 -11.25095 -11.13165 -11.05785 -10.87674 -10.67652 -10.47511 -10.26777 -10.06311 -9.73490 -9.49211 -8.88192 -8.64299 -8.21264 -8.06495 -7.45641 -6.24763 -4.29706 0.84545 0.90828 1.92632 2.17355 2.54555 2.77498 2.97335 3.22135 3.29669 3.33762 3.36142 3.49567 3.77477 4.15337 4.32867 4.35935 4.49153 4.71515 4.72391 4.86551 5.01619 5.06253 5.10554 5.30985 5.44260 5.52498 5.73827 5.78210 5.90206 6.00963 6.16474 6.37707 6.47592 6.50935 6.81161 6.91901 6.95212 7.07135 7.40854 7.67203 7.74416 7.90270 8.03926 8.36451 8.61948 8.80081 9.36038 10.84024 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002102 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.386984 B =13320.564195 C =14313.538363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.098 3.902 4 C -0.176 4.176 5 C -0.095 4.095 6 C -0.046 4.046 7 Cl -0.066 7.066 8 C -0.089 4.089 9 C 0.163 3.837 10 N -0.672 5.672 11 C 0.713 3.287 12 O -0.548 6.548 13 N -0.635 5.635 14 C 0.272 3.728 15 C -0.285 4.285 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.258 3.742 19 C -0.527 4.527 20 H 0.069 0.931 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.304 5.304 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.414 0.586 35 H 0.409 0.591 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.659 12.517 2.629 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.050 3.950 4 C -0.195 4.195 5 C -0.115 4.115 6 C -0.073 4.073 7 Cl -0.037 7.037 8 C -0.110 4.110 9 C 0.066 3.934 10 N -0.320 5.320 11 C 0.413 3.587 12 O -0.423 6.423 13 N -0.285 5.285 14 C 0.018 3.982 15 C -0.316 4.316 16 C -0.098 4.098 17 N -0.101 5.101 18 C 0.140 3.860 19 C -0.566 4.566 20 H 0.088 0.912 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.135 5.135 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.187 0.813 34 H 0.251 0.749 35 H 0.245 0.755 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.565 11.916 2.427 28.309 hybrid contribution -0.283 -0.249 0.923 0.997 sum -25.848 11.667 3.350 28.556 Atomic orbital electron populations 1.23090 0.77795 1.04254 1.01495 1.86030 1.21829 1.26103 1.89049 1.18659 0.90093 0.85296 1.00968 1.20920 1.00085 0.90904 1.07599 1.20782 0.92352 0.98016 1.00327 1.20589 0.92432 0.86945 1.07375 1.98374 1.81021 1.27260 1.97035 1.21273 1.02787 0.88205 0.98775 1.16572 0.86226 0.86150 1.04419 1.42310 1.12960 1.11696 1.64992 1.15543 0.80226 0.83551 0.79340 1.90850 1.72382 1.31677 1.47387 1.41282 1.10897 1.15120 1.61178 1.18730 0.84754 0.94673 1.00019 1.21507 0.94791 1.01775 1.13559 1.22569 0.98189 0.87566 1.01434 1.49082 1.10908 1.09546 1.40523 1.19759 0.76593 0.90656 0.98957 1.21295 1.10697 1.31515 0.93076 0.91239 1.24949 0.95959 0.95719 0.97504 1.69923 1.18117 1.37505 1.27805 0.86278 0.78441 0.78646 0.83169 1.19562 1.20708 1.20763 1.77334 0.93076 1.21029 1.22029 0.92430 0.87997 0.92455 0.84209 0.84657 0.81330 0.74931 0.75537 0.82082 0.81423 0.93694 0.92474 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.54 9.91 -19.74 -0.20 -2.73 16 3 C 0.10 0.90 6.70 -39.08 -0.26 0.64 16 4 C -0.18 -1.32 9.03 -39.47 -0.36 -1.68 16 5 C -0.09 -0.79 9.82 -39.53 -0.39 -1.18 16 6 C -0.05 -0.49 6.32 -39.51 -0.25 -0.74 16 7 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 8 C -0.09 -1.09 8.50 -39.39 -0.33 -1.42 16 9 C 0.16 1.84 6.45 -83.49 -0.54 1.31 16 10 N -0.67 -7.45 5.30 -14.11 -0.07 -7.52 16 11 C 0.71 10.32 8.34 -86.91 -0.72 9.60 16 12 O -0.55 -9.37 10.64 5.28 0.06 -9.31 16 13 N -0.64 -9.61 5.46 -15.51 -0.08 -9.70 16 14 C 0.27 5.36 8.11 -154.37 -1.25 4.11 16 15 C -0.28 -5.56 9.61 -39.83 -0.38 -5.95 16 16 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 17 N -0.32 -7.34 3.67 -62.56 -0.23 -7.57 16 18 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 19 C -0.53 -14.59 9.23 -34.44 -0.32 -14.91 16 20 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 23 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.22 16 31 H 0.14 0.65 6.30 -52.49 -0.33 0.32 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.17 2.40 5.79 -52.48 -0.30 2.09 16 34 H 0.41 3.48 8.36 -40.82 -0.34 3.14 16 35 H 0.41 4.95 8.84 -40.82 -0.36 4.59 16 36 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 37 H 0.17 2.71 8.06 -52.48 -0.42 2.28 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.41 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -32.89 362.66 -8.70 -41.59 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.10 Total: 6.92 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.14 Total: -0.21 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.74 Total: -55.81 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.14 Total: -12.04 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.89 -8.70 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101111.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.026 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds