Wall clock time and date at job start Tue Mar 31 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99672 * 2 1 4 4 C 1.50707 * 109.47010 * 269.99739 * 3 2 1 5 5 H 1.07998 * 119.99630 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99606 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00259 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99496 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47069 * 60.00118 * 8 6 4 10 10 H 1.48504 * 109.47322 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47448 * 300.00264 * 8 6 4 12 12 C 1.34770 * 120.00353 * 179.97438 * 2 1 3 13 13 O 1.21595 * 120.00405 * 180.02562 * 12 2 1 14 14 N 1.34784 * 119.99954 * 0.02562 * 12 2 1 15 15 C 1.40062 * 119.99737 * 174.47505 * 14 12 2 16 16 C 1.38875 * 120.00147 * 326.59832 * 15 14 12 17 17 C 1.38039 * 120.00010 * 179.72834 * 16 15 14 18 18 C 1.38877 * 120.00090 * 0.54833 * 17 16 15 19 19 N 1.40130 * 120.00482 * 179.74480 * 18 17 16 20 20 N 1.39876 * 125.48044 * 144.67521 * 19 18 17 21 21 C 1.30306 * 110.09731 * 179.84500 * 20 19 18 22 22 C 1.45940 * 107.82154 * 0.40889 * 21 20 19 23 23 C 1.39934 * 134.02929 * 179.71962 * 22 21 20 24 24 C 1.36482 * 119.63303 * 180.02562 * 23 22 21 25 25 C 1.38960 * 120.62496 * 359.97438 * 24 23 22 26 26 C 1.36619 * 120.81400 * 0.05851 * 25 24 23 27 27 C 1.37265 * 125.47823 * 324.98257 * 19 18 17 28 28 C 1.38886 * 119.99533 * 359.72944 * 18 17 16 29 29 C 1.38036 * 120.00286 * 359.97438 * 28 18 17 30 30 H 1.09002 * 109.47358 * 270.00092 * 1 2 3 31 31 H 1.09002 * 109.47069 * 30.00558 * 1 2 3 32 32 H 1.08998 * 109.46553 * 150.00070 * 1 2 3 33 33 H 1.09001 * 109.47430 * 29.99643 * 3 2 1 34 34 H 1.08998 * 109.47230 * 149.99875 * 3 2 1 35 35 H 0.97001 * 119.99930 * 180.02562 * 7 6 4 36 36 H 0.96996 * 119.99790 * 354.75167 * 14 12 2 37 37 H 1.08000 * 120.00039 * 0.02562 * 16 15 14 38 38 H 1.07999 * 119.99774 * 180.30385 * 17 16 15 39 39 H 1.08003 * 126.09101 * 180.11900 * 21 20 19 40 40 H 1.07998 * 120.18294 * 0.04904 * 23 22 21 41 41 H 1.07994 * 119.69003 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.59550 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.07345 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00418 * 180.02562 * 28 18 17 45 45 H 1.07995 * 120.00257 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4388 3.4163 -3.4339 9 1 2.1415 3.5941 -4.1343 10 1 4.1822 4.7019 -3.4341 11 1 4.2412 2.3810 -4.1336 12 6 2.1389 -1.1671 0.0005 13 8 3.3549 -1.1671 0.0010 14 7 1.4651 -2.3344 0.0005 15 6 2.1607 -3.5445 -0.1157 16 6 3.3181 -3.6095 -0.8805 17 6 4.0067 -4.8008 -0.9905 18 6 3.5359 -5.9371 -0.3457 19 7 4.2319 -7.1478 -0.4616 20 7 4.3614 -8.1095 0.5457 21 6 5.0658 -9.1175 0.1146 22 6 5.4534 -8.8345 -1.2637 23 6 6.2012 -9.5239 -2.2247 24 6 6.3876 -8.9712 -3.4587 25 6 5.8416 -7.7316 -3.7689 26 6 5.1085 -7.0393 -2.8471 27 6 4.9013 -7.5779 -1.5801 28 6 2.3752 -5.8734 0.4145 29 6 1.6900 -4.6807 0.5294 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 1.6083 2.0285 0.5138 34 1 3.1498 1.1385 0.5138 35 1 4.0317 4.4431 -0.8505 36 1 0.4981 -2.3362 0.0770 37 1 3.6820 -2.7268 -1.3853 38 1 4.9094 -4.8501 -1.5812 39 1 5.3216 -10.0024 0.6785 40 1 6.6281 -10.4881 -1.9915 41 1 6.9642 -9.5026 -4.2012 42 1 5.9992 -7.3100 -4.7507 43 1 4.6899 -6.0766 -3.1010 44 1 2.0092 -6.7570 0.9163 45 1 0.7872 -4.6313 1.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097107522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:35 Heat of formation + Delta-G solvation = 110.011855 kcal Electronic energy + Delta-G solvation = -29031.433977 eV Core-core repulsion = 25016.096105 eV Total energy + Delta-G solvation = -4015.337872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.72692 -40.28449 -38.63083 -37.41614 -35.25103 -34.67152 -33.07260 -32.44403 -31.12921 -30.55969 -30.04560 -28.33308 -27.47212 -25.82102 -23.75181 -23.40254 -23.24903 -22.48565 -21.74651 -20.73817 -19.47872 -18.07244 -17.98409 -17.19589 -16.88308 -16.58321 -15.66098 -15.61322 -15.32324 -15.04611 -14.96665 -14.59471 -14.25179 -14.13700 -13.88297 -13.70953 -13.41114 -13.31054 -13.00750 -12.74960 -12.57072 -12.22517 -12.20195 -12.12688 -11.94128 -11.45442 -11.29098 -11.23209 -10.97458 -10.95950 -10.83141 -10.60404 -10.19927 -9.98322 -9.71452 -9.41209 -8.99218 -8.96487 -8.56667 -8.46501 -7.81557 -7.45833 -6.07454 -4.12603 0.57190 0.98618 1.32571 1.49479 2.11676 2.29845 3.08855 3.29606 3.34483 3.37520 3.47955 3.57826 3.94838 4.20170 4.33439 4.35097 4.47613 4.54800 4.70508 4.82111 4.91609 4.96123 5.07750 5.24993 5.26508 5.33132 5.39418 5.43500 5.45982 5.60179 5.72664 5.78637 5.90373 5.99651 6.06470 6.07558 6.13524 6.25180 6.31208 6.36797 6.53040 6.58340 6.74630 6.92072 7.18576 7.29442 7.39376 7.42990 7.59282 7.89521 8.18524 8.48419 8.87415 9.14416 9.52687 11.00436 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.002287 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.637811 B =12238.852197 C =13746.410877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.696 3.304 13 O -0.566 6.566 14 N -0.695 5.695 15 C 0.184 3.816 16 C -0.098 4.098 17 C -0.110 4.110 18 C 0.127 3.873 19 N -0.346 5.346 20 N -0.246 5.246 21 C 0.074 3.926 22 C -0.181 4.181 23 C -0.042 4.042 24 C -0.159 4.159 25 C -0.071 4.071 26 C -0.136 4.136 27 C 0.128 3.872 28 C -0.093 4.093 29 C -0.138 4.138 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.151 0.849 38 H 0.130 0.870 39 H 0.200 0.800 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -25.779 -1.753 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.346 5.346 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.398 3.602 13 O -0.442 6.442 14 N -0.345 5.345 15 C 0.086 3.914 16 C -0.119 4.119 17 C -0.132 4.132 18 C 0.035 3.965 19 N -0.126 5.126 20 N -0.056 5.056 21 C -0.124 4.124 22 C -0.188 4.188 23 C -0.062 4.062 24 C -0.178 4.178 25 C -0.091 4.091 26 C -0.158 4.158 27 C 0.016 3.984 28 C -0.114 4.114 29 C -0.159 4.159 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.216 0.784 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.822 -24.838 -0.674 24.914 hybrid contribution 0.063 0.141 -1.490 1.498 sum -1.758 -24.697 -2.164 24.854 Atomic orbital electron populations 1.21619 0.81566 1.02582 1.00474 1.47519 1.05814 1.06317 1.74920 1.19273 0.92403 0.76745 0.97572 1.21393 1.36758 1.06328 0.92257 0.92520 1.24928 0.95302 0.96365 0.97462 1.69916 1.38191 1.14381 1.30809 0.86551 0.78351 0.77854 0.84607 1.20272 1.21152 1.20167 1.15942 0.85599 0.80048 0.78622 1.90918 1.11272 1.85489 1.56510 1.43048 1.10064 1.03716 1.77657 1.17616 0.93887 0.85063 0.94811 1.21173 0.95103 0.97768 0.97866 1.20873 1.00283 0.90433 1.01574 1.17314 0.93207 0.82302 1.03719 1.45410 1.44173 1.15417 1.07650 1.76742 1.18323 0.98515 1.11993 1.25188 0.96535 0.97827 0.92838 1.19924 1.06819 0.96373 0.95729 1.20335 0.95293 0.98748 0.91848 1.20706 1.03282 0.96714 0.97118 1.20796 0.95181 0.94323 0.98838 1.20089 1.03311 1.01760 0.90608 1.18860 0.95447 0.94561 0.89573 1.20597 0.92988 0.98272 0.99517 1.20693 1.02269 0.91695 1.01284 0.93580 0.90155 0.93030 0.94716 0.93618 0.92594 0.76008 0.83138 0.85173 0.78362 0.85366 0.85548 0.85141 0.85139 0.85038 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.16 59.85 0.61 1.82 16 2 N -0.61 -12.62 2.86 -188.73 -0.54 -13.16 16 3 C 0.26 6.66 5.16 -5.19 -0.03 6.63 16 4 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.70 14.41 8.01 -86.92 -0.70 13.72 16 13 O -0.57 -14.12 13.62 5.28 0.07 -14.05 16 14 N -0.70 -10.80 5.18 -14.19 -0.07 -10.87 16 15 C 0.18 2.78 6.28 -83.62 -0.53 2.26 16 16 C -0.10 -1.60 8.65 -39.42 -0.34 -1.94 16 17 C -0.11 -1.61 8.75 -39.42 -0.34 -1.95 16 18 C 0.13 1.80 6.38 -83.59 -0.53 1.26 16 19 N -0.35 -4.79 3.77 -8.36 -0.03 -4.83 16 20 N -0.25 -3.20 12.14 31.88 0.39 -2.81 16 21 C 0.07 0.73 12.28 -15.12 -0.19 0.55 16 22 C -0.18 -1.94 6.37 -105.19 -0.67 -2.61 16 23 C -0.04 -0.34 10.07 -39.58 -0.40 -0.74 16 24 C -0.16 -1.24 9.97 -39.95 -0.40 -1.64 16 25 C -0.07 -0.62 9.96 -39.90 -0.40 -1.01 16 26 C -0.14 -1.49 9.06 -39.80 -0.36 -1.85 16 27 C 0.13 1.62 6.59 -84.08 -0.55 1.06 16 28 C -0.09 -1.20 9.73 -39.42 -0.38 -1.58 16 29 C -0.14 -1.71 9.96 -39.42 -0.39 -2.11 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.05 0.60 6.45 -51.93 -0.33 0.27 16 33 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.40 4.80 6.63 -40.82 -0.27 4.53 16 37 H 0.15 2.84 6.42 -52.49 -0.34 2.50 16 38 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 39 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.36 6.46 -52.49 -0.34 1.02 16 44 H 0.13 1.53 8.05 -52.48 -0.42 1.11 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -35.25 382.35 -10.07 -45.32 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.34 Total: 5.12 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -6.02 Total: -1.52 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.48 Total: -57.22 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.25 -10.07 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097107522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.332 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds