Wall clock time and date at job start Tue Mar 31 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86803 * 120.00406 * 2 1 4 4 H 1.48498 * 109.46861 * 274.98562 * 3 2 1 5 5 H 1.48506 * 109.46820 * 34.98064 * 3 2 1 6 6 H 1.48494 * 109.47242 * 154.97962 * 3 2 1 7 7 C 1.40051 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99907 * 186.15092 * 7 2 1 9 9 C 1.46374 * 119.99842 * 6.14848 * 7 2 1 10 10 O 1.21684 * 120.00353 * 353.93948 * 9 7 2 11 11 N 1.34784 * 119.99633 * 173.94056 * 9 7 2 12 12 C 1.46501 * 119.99599 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.46732 * 179.97438 * 12 11 9 14 14 N 1.30678 * 125.85407 * 275.00461 * 13 12 11 15 15 C 1.33988 * 109.77816 * 180.02562 * 14 13 12 16 16 C 1.48402 * 125.64942 * 180.26124 * 15 14 13 17 17 C 1.39339 * 120.10869 * 359.44175 * 16 15 14 18 18 C 1.38002 * 119.88824 * 179.74214 * 17 16 15 19 19 C 1.38418 * 120.10849 * 0.52973 * 18 17 16 20 20 Br 1.89097 * 119.89100 * 179.74280 * 19 18 17 21 21 C 1.38420 * 120.21825 * 359.72418 * 19 18 17 22 22 C 1.37998 * 120.11115 * 0.02562 * 21 19 18 23 23 N 1.31494 * 108.69545 * 359.97438 * 15 14 13 24 24 N 1.34525 * 125.84966 * 95.00228 * 13 12 11 25 25 H 0.96993 * 126.74341 * 0.02562 * 24 13 12 26 26 H 0.97001 * 119.99944 * 359.97438 * 1 2 3 27 27 H 0.96997 * 119.99741 * 0.02562 * 11 9 7 28 28 H 1.08999 * 109.47149 * 60.00335 * 12 11 9 29 29 H 1.08990 * 109.47222 * 299.99817 * 12 11 9 30 30 H 1.07997 * 120.05955 * 359.97438 * 17 16 15 31 31 H 1.07992 * 119.95177 * 180.24711 * 18 17 16 32 32 H 1.07998 * 119.94001 * 179.97438 * 21 19 18 33 33 H 1.08004 * 120.05503 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4120 0.5921 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0997 9 6 1.2813 -2.4768 -0.1369 10 8 0.0644 -2.4827 -0.1388 11 7 1.9610 -3.6341 -0.2603 12 6 1.2347 -4.8990 -0.3973 13 6 2.2197 -6.0332 -0.5183 14 7 2.7910 -6.4362 -1.6223 15 6 3.6072 -7.4661 -1.3607 16 6 4.4343 -8.1893 -2.3582 17 6 4.3934 -7.8186 -3.7008 18 6 5.1685 -8.4908 -4.6237 19 6 5.9773 -9.5388 -4.2194 20 35 7.0314 -10.4603 -5.4905 21 6 6.0175 -9.9142 -2.8877 22 6 5.2500 -9.2449 -1.9563 23 7 3.5585 -7.7257 -0.0725 24 7 2.6615 -6.8042 0.4916 25 1 2.4095 -6.7372 1.4259 26 1 -0.4850 0.8401 0.0004 27 1 2.9309 -3.6294 -0.2583 28 1 0.6097 -4.8643 -1.2896 29 1 0.6071 -5.0545 0.4801 30 1 3.7590 -7.0042 -4.0180 31 1 5.1406 -8.2017 -5.6639 32 1 6.6498 -10.7328 -2.5773 33 1 5.2823 -9.5384 -0.9174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:13 Heat of formation + Delta-G solvation = 72.310025 kcal Electronic energy + Delta-G solvation = -20590.604164 eV Core-core repulsion = 17085.104693 eV Total energy + Delta-G solvation = -3505.499471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 350.012 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.20760 -39.38515 -37.44770 -34.20277 -33.34188 -32.47802 -32.15526 -31.46512 -30.96669 -29.26264 -27.36684 -25.37144 -23.84189 -23.02398 -21.19733 -20.56861 -19.88646 -18.28063 -17.25923 -16.93933 -15.78525 -15.65693 -15.49075 -15.27599 -14.62893 -14.12630 -14.07829 -13.83154 -13.81177 -13.54437 -13.05266 -12.39254 -12.13700 -11.76705 -11.62746 -11.54754 -11.45875 -11.24519 -11.01033 -10.61085 -10.57406 -10.34590 -10.30413 -10.15368 -9.88212 -9.35271 -8.93816 -8.69623 -7.79156 -7.78407 -6.30407 -4.74829 0.40053 1.01676 1.27999 1.56698 2.47946 2.69523 3.09623 3.17369 3.20504 3.54263 3.67239 4.04642 4.31820 4.46788 4.54739 4.59377 4.72693 4.86196 5.01332 5.15163 5.32368 5.54150 5.62524 5.68072 5.87459 5.90500 6.03192 6.07884 6.24754 6.25583 6.43796 6.93564 7.34794 7.68152 7.84639 7.95663 8.19601 8.92445 9.30983 10.45040 10.63421 Molecular weight = 350.01amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.001890 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.894890 B =14809.317640 C =15719.358329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.761 5.761 12 C 0.207 3.793 13 C 0.296 3.704 14 N -0.518 5.518 15 C 0.256 3.744 16 C 0.010 3.990 17 C -0.069 4.069 18 C -0.094 4.094 19 C -0.081 4.081 20 Br -0.053 7.053 21 C -0.096 4.096 22 C -0.081 4.081 23 N -0.304 5.304 24 N -0.470 5.470 25 H 0.445 0.555 26 H 0.270 0.730 27 H 0.384 0.616 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 -21.156 -7.327 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.088 0.912 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.080 3.920 13 C 0.017 3.983 14 N -0.246 5.246 15 C -0.024 4.024 16 C 0.007 3.993 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.161 4.161 20 Br 0.033 6.967 21 C -0.115 4.115 22 C -0.102 4.102 23 N -0.134 5.134 24 N -0.189 5.189 25 H 0.291 0.709 26 H 0.081 0.919 27 H 0.216 0.784 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.166 0.834 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.031 -21.811 -7.787 26.573 hybrid contribution 0.414 1.111 1.000 1.551 sum 13.445 -20.700 -6.787 25.599 Atomic orbital electron populations 1.70010 1.07093 1.27534 1.34714 1.25707 0.94648 1.00381 0.92518 0.86319 0.80183 0.81241 0.78817 1.19664 1.20393 1.18871 1.20829 0.94162 0.89186 1.53675 0.91249 1.18265 0.87141 0.81914 0.76493 1.90619 1.13938 1.85928 1.55482 1.46230 1.08887 1.04389 1.82442 1.19425 0.89675 0.79432 1.03499 1.24767 0.95871 0.94448 0.83173 1.70532 1.13133 1.13624 1.27325 1.22190 0.96422 0.93832 0.89946 1.17567 0.95693 0.95080 0.90974 1.21326 0.97492 0.99098 0.91086 1.21092 0.95349 0.94324 1.00624 1.21944 1.00736 0.99512 0.93916 1.96730 1.68466 1.75702 1.55814 1.21004 0.99473 1.00218 0.90852 1.21204 0.94595 0.94042 1.00354 1.78106 1.12351 1.13637 1.09277 1.48042 1.33850 1.25206 1.11794 0.70869 0.91926 0.78395 0.89062 0.90604 0.83382 0.84313 0.84501 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.13 11.85 55.55 0.66 -21.47 16 2 C 0.09 2.37 5.49 -17.37 -0.10 2.27 16 3 Si 0.91 19.55 29.56 -169.99 -5.03 14.52 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.54 -14.69 9.53 -35.63 -0.34 -15.03 16 8 H 0.07 1.74 7.86 -52.48 -0.41 1.32 16 9 C 0.56 14.96 7.74 -12.98 -0.10 14.86 16 10 O -0.58 -17.64 15.04 5.20 0.08 -17.56 16 11 N -0.76 -15.87 5.54 -62.90 -0.35 -16.22 16 12 C 0.21 3.59 6.30 -5.19 -0.03 3.56 16 13 C 0.30 4.51 7.59 -155.74 -1.18 3.33 16 14 N -0.52 -8.32 10.82 -8.56 -0.09 -8.41 16 15 C 0.26 3.74 7.78 -156.62 -1.22 2.52 16 16 C 0.01 0.12 5.88 -104.90 -0.62 -0.50 16 17 C -0.07 -0.77 9.69 -39.26 -0.38 -1.15 16 18 C -0.09 -0.89 9.77 -39.60 -0.39 -1.28 16 19 C -0.08 -0.75 6.23 -39.45 -0.25 -1.00 16 20 Br -0.05 -0.44 33.69 -68.01 -2.29 -2.73 16 21 C -0.10 -0.85 9.77 -39.60 -0.39 -1.24 16 22 C -0.08 -0.83 9.68 -39.26 -0.38 -1.21 16 23 N -0.30 -4.28 12.43 32.10 0.40 -3.88 16 24 N -0.47 -6.12 7.44 32.61 0.24 -5.88 16 25 H 0.44 4.40 8.96 -182.35 -1.63 2.76 16 26 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 27 H 0.38 7.39 8.44 -40.82 -0.34 7.04 16 28 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.15 1.67 7.84 -52.49 -0.41 1.26 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.31 7.83 -52.48 -0.41 0.90 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -33.34 324.77 -10.89 -44.23 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.04 Total: 7.36 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -5.36 Total: 5.14 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.86 Total: -55.86 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.08 Total: -17.56 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.34 -10.89 -44.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.538 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds