Wall clock time and date at job start Tue Mar 31 2020 06:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47118 * 2 1 4 4 H 1.08993 * 109.47339 * 54.74263 * 3 2 1 5 5 C 1.53000 * 109.47111 * 174.74731 * 3 2 1 6 6 N 1.46505 * 109.47100 * 294.27773 * 5 3 2 7 7 C 1.38105 * 120.00063 * 176.48416 * 6 5 3 8 8 N 1.32857 * 120.81335 * 359.97438 * 7 6 5 9 9 C 1.32130 * 121.19217 * 179.97438 * 8 7 6 10 10 N 1.31504 * 122.64314 * 0.02562 * 9 8 7 11 11 C 1.33190 * 120.68792 * 359.97438 * 10 9 8 12 12 C 1.40814 * 120.81179 * 179.71771 * 7 6 5 13 13 C 1.41180 * 134.69573 * 0.68316 * 12 7 6 14 14 N 1.30255 * 108.46607 * 179.54168 * 13 12 7 15 15 N 1.36320 * 134.61956 * 180.02562 * 11 10 9 16 16 C 1.46500 * 125.86828 * 359.97438 * 15 11 10 17 17 C 1.50702 * 109.46855 * 90.00495 * 16 15 11 18 18 H 1.08000 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00065 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99761 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46786 * 90.00249 * 21 19 17 23 23 H 1.48505 * 109.47126 * 209.99822 * 21 19 17 24 24 H 1.48498 * 109.47510 * 330.00336 * 21 19 17 25 25 C 1.50699 * 109.47016 * 294.74385 * 3 2 1 26 26 C 1.38238 * 120.00183 * 299.72684 * 25 3 2 27 27 C 1.38233 * 120.00052 * 179.78825 * 26 25 3 28 28 C 1.38232 * 120.00250 * 0.44174 * 27 26 25 29 29 C 1.38240 * 119.99893 * 359.81235 * 28 27 26 30 30 C 1.38234 * 120.00042 * 119.99792 * 25 3 2 31 31 H 1.09000 * 109.46763 * 185.41019 * 1 2 3 32 32 H 1.08993 * 109.47172 * 65.41086 * 1 2 3 33 33 H 1.09003 * 109.46913 * 305.40595 * 1 2 3 34 34 H 1.09000 * 109.47076 * 120.00266 * 2 1 3 35 35 H 1.09006 * 109.47089 * 240.00245 * 2 1 3 36 36 H 1.08997 * 109.47468 * 54.27671 * 5 3 2 37 37 H 1.09003 * 109.47493 * 174.28028 * 5 3 2 38 38 H 0.97005 * 119.99789 * 356.48135 * 6 5 3 39 39 H 1.07999 * 118.67449 * 180.02562 * 9 8 7 40 40 H 1.07994 * 125.76734 * 359.31669 * 13 12 7 41 41 H 1.08999 * 109.47196 * 209.99498 * 16 15 11 42 42 H 1.08995 * 109.47809 * 330.00670 * 16 15 11 43 43 H 0.97000 * 119.99840 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.99637 * 359.97438 * 26 25 3 45 45 H 1.08006 * 120.00013 * 180.27767 * 27 26 25 46 46 H 1.08003 * 120.00488 * 179.83440 * 28 27 26 47 47 H 1.07996 * 120.00079 * 180.02562 * 29 28 27 48 48 H 1.08000 * 120.00008 * 359.97438 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6019 1.9828 0.8391 5 6 3.5643 1.4445 0.1321 6 7 3.9414 0.9159 1.4454 7 6 5.2744 0.7530 1.7673 8 7 6.2281 1.0698 0.8983 9 6 7.5058 0.9175 1.1987 10 7 7.9107 0.4491 2.3588 11 6 7.0307 0.1031 3.2968 12 6 5.6563 0.2519 3.0267 13 6 4.9596 -0.1876 4.1733 14 7 5.8303 -0.5630 5.0664 15 7 7.1261 -0.3975 4.5612 16 6 8.3700 -0.7100 5.2691 17 6 8.8323 0.5044 6.0325 18 1 8.2572 1.4177 5.9938 19 6 9.9893 0.4494 6.7803 20 7 10.3924 1.5091 7.4468 21 14 10.9835 -1.1305 6.8478 22 1 11.9863 -1.1315 5.7526 23 1 11.6797 -1.2218 8.1564 24 1 10.0751 -2.2943 6.6882 25 6 1.6467 2.1143 -1.2904 26 6 2.0919 1.6077 -2.4971 27 6 1.7275 2.2213 -3.6809 28 6 0.9256 3.3470 -3.6577 29 6 0.4847 3.8568 -2.4507 30 6 0.8455 3.2405 -1.2671 31 1 -0.3633 -1.0231 0.0969 32 1 -0.3633 0.4276 -0.9344 33 1 -0.3633 0.5954 0.8376 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 3.9975 0.8198 -0.6490 37 1 3.9365 2.4639 0.0302 38 1 3.2547 0.6804 2.0888 39 1 8.2473 1.1884 0.4617 40 1 3.8863 -0.2057 4.2915 41 1 8.1959 -1.5314 5.9642 42 1 9.1352 -0.9994 4.5489 43 1 11.2062 1.4703 7.9732 44 1 2.7218 0.7306 -2.5150 45 1 2.0717 1.8229 -4.6240 46 1 0.6431 3.8281 -4.5825 47 1 -0.1422 4.7360 -2.4326 48 1 0.5009 3.6387 -0.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:54 Heat of formation + Delta-G solvation = 132.897729 kcal Electronic energy + Delta-G solvation = -29476.903056 eV Core-core repulsion = 25532.964773 eV Total energy + Delta-G solvation = -3943.938283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43817 -40.04973 -38.53700 -37.19237 -35.08351 -33.65987 -32.15925 -31.44928 -31.25161 -31.14411 -29.99777 -28.07116 -27.55689 -24.29761 -23.94890 -23.30000 -22.96693 -22.56765 -22.08960 -20.30804 -20.03732 -17.98206 -17.51484 -17.10238 -17.06856 -16.38076 -15.86478 -15.44161 -15.37407 -15.15804 -14.63733 -14.51824 -14.20792 -14.10764 -13.93203 -13.74865 -13.65479 -13.57209 -13.07259 -12.90868 -12.86848 -12.46823 -12.31622 -12.04754 -11.87702 -11.50807 -11.47009 -11.23340 -11.11540 -11.01588 -10.97397 -10.81518 -10.68786 -10.25596 -10.12900 -9.68448 -9.29122 -9.22312 -9.02533 -8.73026 -8.70766 -8.25337 -7.65772 -6.21307 -4.23753 1.02716 1.09531 1.27188 1.90742 2.83964 2.98778 3.07689 3.21968 3.27501 3.29377 3.47644 4.25033 4.27003 4.30964 4.36223 4.53545 4.67033 4.68152 4.68886 4.70293 4.81185 4.87554 4.93946 5.08117 5.09435 5.11955 5.16361 5.22329 5.29318 5.34700 5.47383 5.59859 5.62998 5.67051 5.70809 5.74255 5.75844 5.84934 5.93783 6.15863 6.21433 6.26049 6.31860 6.50575 6.54450 6.68371 6.86706 6.90319 7.20410 7.31868 7.42943 7.82407 8.13020 8.32077 8.76558 8.81449 9.33487 10.91427 Molecular weight = 351.18amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.001984 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.181348 B =14107.380951 C =14563.740056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.063 4.063 4 H 0.085 0.915 5 C 0.140 3.860 6 N -0.706 5.706 7 C 0.510 3.490 8 N -0.616 5.616 9 C 0.370 3.630 10 N -0.557 5.557 11 C 0.367 3.633 12 C -0.336 4.336 13 C 0.072 3.928 14 N -0.241 5.241 15 N -0.332 5.332 16 C 0.237 3.763 17 C -0.537 4.537 18 H 0.078 0.922 19 C 0.079 3.921 20 N -0.888 5.888 21 Si 0.875 3.125 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.068 4.068 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.125 4.125 29 C -0.119 4.119 30 C -0.114 4.114 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.196 0.804 40 H 0.184 0.816 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.268 0.732 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.006 -0.327 -21.587 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.082 4.082 4 H 0.103 0.897 5 C 0.017 3.983 6 N -0.339 5.339 7 C 0.258 3.742 8 N -0.347 5.347 9 C 0.076 3.924 10 N -0.282 5.282 11 C 0.119 3.881 12 C -0.354 4.354 13 C -0.123 4.123 14 N -0.057 5.057 15 N -0.118 5.118 16 C 0.118 3.882 17 C -0.575 4.575 18 H 0.096 0.904 19 C -0.125 4.125 20 N -0.525 5.525 21 Si 0.701 3.299 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.068 4.068 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.132 4.132 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.245 0.755 39 H 0.212 0.788 40 H 0.201 0.799 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.819 -0.524 -20.853 29.471 hybrid contribution -0.279 -0.487 0.219 0.603 sum -21.098 -1.011 -20.634 29.528 Atomic orbital electron populations 1.21770 0.95483 1.01624 1.01983 1.21627 0.96228 0.94852 1.02749 1.20503 0.95187 0.96808 0.95688 0.89658 1.21337 0.92553 0.99868 0.84591 1.44315 1.02896 1.69210 1.17488 1.17879 0.85739 0.84470 0.86121 1.67964 1.01559 1.30339 1.34827 1.24422 0.89740 0.87778 0.90476 1.67500 1.37926 1.20787 1.01999 1.18899 0.88961 0.92286 0.87972 1.19584 0.96095 1.21269 0.98431 1.23385 0.99426 0.99453 0.90024 1.76939 0.87706 1.19640 1.21375 1.48936 1.05799 1.49225 1.07875 1.20081 0.76831 0.98576 0.92679 1.21103 1.09688 0.97530 1.29228 0.90418 1.24777 0.96649 0.96582 0.94485 1.69873 1.23563 1.28808 1.30229 0.86868 0.81006 0.83722 0.78310 1.19499 1.20544 1.18880 1.19587 0.97572 0.95516 0.94152 1.21036 0.99794 1.00141 0.91928 1.21151 0.98206 0.96094 0.98152 1.21158 0.98439 0.96714 0.97955 1.21138 1.00143 0.99905 0.92566 1.21075 0.98328 0.95460 0.98320 0.92732 0.92616 0.92688 0.91335 0.91446 0.90957 0.91352 0.75466 0.78806 0.79944 0.93070 0.93091 0.92160 0.85944 0.86113 0.86289 0.86182 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.64 37.16 0.36 -0.54 16 2 C -0.12 -0.73 5.24 -26.73 -0.14 -0.87 16 3 C -0.06 -0.42 2.05 -91.77 -0.19 -0.61 16 4 H 0.09 0.53 7.88 -51.93 -0.41 0.12 16 5 C 0.14 1.26 4.84 -4.04 -0.02 1.24 16 6 N -0.71 -7.38 5.31 -60.08 -0.32 -7.70 16 7 C 0.51 7.68 7.55 -154.86 -1.17 6.51 16 8 N -0.62 -9.67 9.69 -13.62 -0.13 -9.81 16 9 C 0.37 6.14 12.24 -92.11 -1.13 5.02 16 10 N -0.56 -11.59 10.47 -13.97 -0.15 -11.73 16 11 C 0.37 7.97 8.04 -156.23 -1.26 6.71 16 12 C -0.34 -5.97 6.14 -106.81 -0.66 -6.63 16 13 C 0.07 1.19 11.87 -17.10 -0.20 0.99 16 14 N -0.24 -5.06 12.45 30.80 0.38 -4.67 16 15 N -0.33 -7.80 3.63 -61.64 -0.22 -8.02 16 16 C 0.24 5.97 5.26 -5.19 -0.03 5.94 16 17 C -0.54 -15.67 9.94 -34.44 -0.34 -16.01 16 18 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 20 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 21 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -6.00 6.54 56.52 0.37 -5.64 16 25 C -0.07 -0.49 3.87 -104.62 -0.40 -0.90 16 26 C -0.11 -0.82 8.71 -39.58 -0.34 -1.16 16 27 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 28 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 29 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 30 C -0.11 -0.81 9.67 -39.58 -0.38 -1.20 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.43 7.20 -51.93 -0.37 0.05 16 35 H 0.07 0.44 7.24 -51.93 -0.38 0.07 16 36 H 0.07 0.69 7.58 -51.93 -0.39 0.30 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 3.36 7.70 -40.82 -0.31 3.05 16 39 H 0.20 2.44 8.06 -52.49 -0.42 2.01 16 40 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.05 1.26 7.20 -51.93 -0.37 0.88 16 42 H 0.05 1.26 7.57 -51.93 -0.39 0.87 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.12 0.81 7.14 -52.49 -0.38 0.44 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 47 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.12 0.71 7.95 -52.49 -0.42 0.30 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -34.79 400.50 -12.28 -47.07 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.79 Total: 1.88 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -7.20 Total: -2.99 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.34 Total: -68.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.79 -12.28 -47.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.969 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds