Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48499 * 109.47238 * 269.99702 * 3 2 1 5 5 H 1.48499 * 109.47398 * 30.00219 * 3 2 1 6 6 H 1.48507 * 109.47231 * 149.99830 * 3 2 1 7 7 C 1.37883 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99965 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47022 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.87475 * 270.00364 * 10 9 7 12 12 C 1.30247 * 109.69913 * 179.97438 * 11 10 9 13 13 C 1.41175 * 108.46861 * 359.76953 * 12 11 10 14 14 C 1.36312 * 125.87280 * 90.00557 * 10 9 7 15 15 N 1.33196 * 134.61901 * 359.97438 * 14 10 9 16 16 C 1.31507 * 120.68812 * 180.02562 * 15 14 10 17 17 N 1.32119 * 122.64104 * 359.97438 * 16 15 14 18 18 C 1.32863 * 121.19729 * 0.02562 * 17 16 15 19 19 N 1.38105 * 120.81126 * 179.97438 * 18 17 16 20 20 C 1.46134 * 111.00566 * 60.84108 * 19 18 17 21 21 C 1.51002 * 113.76023 * 305.59608 * 20 19 18 22 22 N 1.47332 * 110.15893 * 296.08007 * 21 20 19 23 23 C 1.39693 * 117.69719 * 82.50728 * 22 21 20 24 24 C 1.38863 * 120.57241 * 112.70123 * 23 22 21 25 25 C 1.38162 * 119.67006 * 182.40736 * 24 23 22 26 26 C 1.38309 * 120.24951 * 359.76874 * 25 24 23 27 27 C 1.38423 * 120.15029 * 359.34891 * 26 25 24 28 28 C 1.37831 * 119.70318 * 0.52918 * 27 26 25 29 29 C 1.46419 * 111.00179 * 294.34847 * 19 18 17 30 30 H 0.96997 * 119.99392 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46818 * 60.00360 * 9 7 2 32 32 H 1.08997 * 109.47547 * 300.00610 * 9 7 2 33 33 H 1.07996 * 125.76893 * 179.97438 * 12 11 10 34 34 H 1.07999 * 118.67501 * 179.97438 * 16 15 14 35 35 H 1.08998 * 108.61914 * 66.70107 * 20 19 18 36 36 H 1.08993 * 108.62464 * 184.62609 * 20 19 18 37 37 H 1.09008 * 109.35704 * 56.28798 * 21 20 19 38 38 H 1.08994 * 109.36031 * 175.86912 * 21 20 19 39 39 H 0.97002 * 121.15286 * 262.48551 * 22 21 20 40 40 H 1.08005 * 120.16307 * 2.42688 * 24 23 22 41 41 H 1.07997 * 119.87708 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.92443 * 179.33707 * 26 25 24 43 43 H 1.07996 * 120.15204 * 180.50034 * 27 26 25 44 44 H 1.09002 * 109.51364 * 279.05857 * 29 19 18 45 45 H 1.08993 * 109.52298 * 158.88632 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0001 11 7 4.2737 -3.3490 1.1351 12 6 4.6900 -4.5286 0.7723 13 6 4.7030 -4.5841 -0.6383 14 6 4.2657 -3.3287 -1.1044 15 7 4.1916 -3.1216 -2.4181 16 6 4.5258 -4.0689 -3.2668 17 7 4.9471 -5.2589 -2.8768 18 6 5.0553 -5.5623 -1.5878 19 7 5.4962 -6.8088 -1.1891 20 6 6.8502 -7.0658 -1.6751 21 6 7.0025 -6.8991 -3.1681 22 7 6.1795 -7.8946 -3.8768 23 6 4.8242 -7.6073 -4.0562 24 6 4.3142 -7.3720 -5.3261 25 6 2.9815 -7.0405 -5.4773 26 6 2.1568 -6.9476 -4.3709 27 6 2.6593 -7.1996 -3.1060 28 6 3.9879 -7.5329 -2.9529 29 6 4.5434 -7.8510 -1.5763 30 1 -0.4849 0.8401 0.0004 31 1 3.8752 -0.6797 0.8896 32 1 3.8746 -0.6809 -0.8904 33 1 4.9739 -5.3301 1.4381 34 1 4.4529 -3.8660 -4.3250 35 1 7.5349 -6.3798 -1.1765 36 1 7.1271 -8.0862 -1.4106 37 1 6.6833 -5.8968 -3.4542 38 1 8.0488 -7.0347 -3.4419 39 1 6.5653 -8.7208 -4.2076 40 1 4.9561 -7.4481 -6.1914 41 1 2.5812 -6.8572 -6.4635 42 1 1.1183 -6.6775 -4.4941 43 1 2.0135 -7.1350 -2.2429 44 1 3.7280 -7.8855 -0.8537 45 1 5.0495 -8.8160 -1.6018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = 198.737310 kcal Electronic energy + Delta-G solvation = -31576.321436 eV Core-core repulsion = 27597.123739 eV Total energy + Delta-G solvation = -3979.197697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.155 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.85157 -40.36656 -38.38045 -37.31594 -34.98222 -33.81102 -32.55169 -31.79521 -31.56050 -30.57725 -29.68966 -27.86039 -27.00200 -25.80958 -24.11961 -23.52118 -22.54826 -22.15936 -21.66863 -20.73625 -19.53021 -17.81962 -17.57213 -17.29706 -17.14259 -16.40199 -15.97539 -15.63790 -15.28744 -14.87203 -14.75625 -14.59055 -14.30186 -14.11154 -13.68138 -13.65369 -13.54885 -13.02503 -12.78040 -12.66967 -12.48363 -12.15004 -12.06994 -11.63817 -11.54662 -11.37709 -11.24363 -11.19314 -10.95859 -10.74575 -10.60638 -10.23379 -10.13765 -9.69425 -9.24794 -8.94465 -8.82420 -8.75890 -8.67172 -8.26917 -7.96125 -7.76078 -6.24532 -4.27366 0.90588 1.45858 1.59510 1.74211 2.79418 2.95120 3.19000 3.24653 3.26758 3.47708 3.71185 3.99462 4.14736 4.23982 4.38796 4.58164 4.75596 4.79504 4.97743 5.06559 5.08114 5.14052 5.17998 5.22542 5.28588 5.34666 5.46146 5.55845 5.58428 5.62167 5.75319 5.77992 5.93801 6.04352 6.17510 6.20950 6.46894 6.47360 6.54867 6.65937 6.72223 6.77300 6.84640 6.93927 7.11023 7.24169 7.28642 7.49198 7.56910 7.99791 8.03212 8.27645 8.55851 8.77203 9.30122 10.88180 Molecular weight = 350.16amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.003525 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.785946 B = 7942.408001 C = 8747.030400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.335 5.335 11 N -0.232 5.232 12 C 0.081 3.919 13 C -0.256 4.256 14 C 0.343 3.657 15 N -0.519 5.519 16 C 0.333 3.667 17 N -0.556 5.556 18 C 0.418 3.582 19 N -0.481 5.481 20 C 0.039 3.961 21 C 0.099 3.901 22 N -0.786 5.786 23 C 0.222 3.778 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.136 4.136 27 C -0.096 4.096 28 C -0.122 4.122 29 C 0.111 3.889 30 H 0.269 0.731 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.867 -18.093 -8.139 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.700 3.300 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.119 3.881 10 N -0.122 5.122 11 N -0.047 5.047 12 C -0.115 4.115 13 C -0.272 4.272 14 C 0.094 3.906 15 N -0.239 5.239 16 C 0.039 3.961 17 N -0.277 5.277 18 C 0.172 3.828 19 N -0.202 5.202 20 C -0.090 4.090 21 C -0.027 4.027 22 N -0.430 5.430 23 C 0.126 3.874 24 C -0.163 4.163 25 C -0.125 4.125 26 C -0.154 4.154 27 C -0.115 4.115 28 C -0.127 4.127 29 C -0.016 4.016 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.210 0.790 34 H 0.206 0.794 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.229 0.771 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.102 0.898 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.287 -16.513 -7.417 22.456 hybrid contribution 0.363 0.084 -0.811 0.892 sum 13.650 -16.430 -8.228 22.890 Atomic orbital electron populations 1.69872 1.06164 1.27394 1.48947 1.24766 0.94830 0.98808 0.93955 0.86884 0.80373 0.83655 0.79100 1.19525 1.20470 1.18852 1.21095 0.87841 0.95475 1.53298 0.90405 1.20086 0.96707 0.72417 0.98900 1.48999 1.50846 1.13298 0.99015 1.76997 1.15009 1.03802 1.08864 1.23636 0.99410 0.95704 0.92794 1.19853 1.14975 0.96605 0.95755 1.19079 0.93978 0.89120 0.88449 1.67497 1.20355 1.35863 1.00196 1.24503 0.89262 0.83170 0.99125 1.68962 1.20422 1.21317 1.17028 1.19349 0.87643 0.89347 0.86511 1.59458 1.03227 0.99378 1.58144 1.22192 0.88127 1.02589 0.96119 1.21826 0.94146 0.95348 0.91373 1.44031 1.05608 1.23061 1.70259 1.16947 0.84170 0.95045 0.91257 1.21182 0.95680 1.02652 0.96803 1.20909 0.93582 0.99794 0.98226 1.21001 0.99715 1.02095 0.92636 1.20812 0.94514 0.98949 0.97240 1.20645 0.93859 1.02244 0.95916 1.21257 0.94748 0.93524 0.92028 0.92118 0.92976 0.93209 0.78982 0.79373 0.90347 0.90167 0.88721 0.91521 0.77147 0.86825 0.86798 0.86763 0.86925 0.89835 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.54 -15.53 9.94 -34.44 -0.34 -15.88 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.24 5.89 5.26 -5.20 -0.03 5.86 16 10 N -0.33 -7.72 3.63 -61.65 -0.22 -7.94 16 11 N -0.23 -4.83 12.45 30.80 0.38 -4.45 16 12 C 0.08 1.37 12.05 -17.11 -0.21 1.16 16 13 C -0.26 -4.55 6.17 -106.81 -0.66 -5.21 16 14 C 0.34 7.25 8.04 -156.23 -1.26 6.00 16 15 N -0.52 -10.47 10.47 -13.97 -0.15 -10.62 16 16 C 0.33 5.40 12.24 -92.12 -1.13 4.27 16 17 N -0.56 -8.07 3.54 -13.63 -0.05 -8.11 16 18 C 0.42 6.19 4.91 -154.85 -0.76 5.43 16 19 N -0.48 -5.66 4.80 -175.72 -0.84 -6.50 16 20 C 0.04 0.36 5.46 -5.24 -0.03 0.33 16 21 C 0.10 0.92 6.23 -4.59 -0.03 0.89 16 22 N -0.79 -7.12 5.28 -59.16 -0.31 -7.43 16 23 C 0.22 2.48 4.60 -83.90 -0.39 2.09 16 24 C -0.14 -1.57 10.00 -39.38 -0.39 -1.97 16 25 C -0.11 -1.20 10.03 -39.58 -0.40 -1.60 16 26 C -0.14 -1.71 10.05 -39.49 -0.40 -2.11 16 27 C -0.10 -1.27 9.48 -39.66 -0.38 -1.65 16 28 C -0.12 -1.49 3.05 -104.07 -0.32 -1.81 16 29 C 0.11 1.22 5.72 -4.69 -0.03 1.20 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 31 H 0.05 1.26 7.20 -51.92 -0.37 0.89 16 32 H 0.05 1.21 7.57 -51.93 -0.39 0.82 16 33 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 34 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 37 H 0.09 1.14 5.37 -51.92 -0.28 0.86 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.39 2.85 8.96 -40.82 -0.37 2.48 16 40 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.53 7.99 -52.49 -0.42 1.11 16 44 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 45 H 0.09 0.82 7.70 -51.93 -0.40 0.42 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -32.54 364.57 -12.02 -44.56 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.60 Total: 5.80 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -6.83 Total: -0.77 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -0.42 Total: -71.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.54 -12.02 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.301 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds