Wall clock time and date at job start Tue Mar 31 2020 06:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99657 * 2 1 4 4 C 1.53000 * 109.47270 * 293.95439 * 3 2 1 5 5 C 1.53002 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47129 * 180.02562 * 5 4 3 7 7 C 1.38236 * 119.99996 * 269.72276 * 6 5 4 8 8 C 1.38236 * 119.99933 * 179.76605 * 7 6 5 9 9 C 1.38238 * 120.00065 * 0.50527 * 8 7 6 10 10 C 1.38238 * 120.00093 * 359.74976 * 9 8 7 11 11 C 1.38238 * 120.00139 * 89.99409 * 6 5 4 12 12 C 1.38107 * 110.99960 * 123.95288 * 2 1 3 13 13 N 1.32858 * 120.81448 * 236.02356 * 12 2 1 14 14 C 1.32123 * 121.19451 * 180.02562 * 13 12 2 15 15 N 1.31510 * 122.64648 * 0.02562 * 14 13 12 16 16 C 1.33199 * 120.68256 * 0.02562 * 15 14 13 17 17 C 1.40818 * 120.81214 * 56.04874 * 12 2 1 18 18 C 1.41168 * 134.69640 * 0.03213 * 17 12 2 19 19 N 1.30249 * 108.46928 * 180.20253 * 18 17 12 20 20 N 1.36308 * 134.61923 * 179.97438 * 16 15 14 21 21 C 1.46510 * 125.87260 * 0.07553 * 20 16 15 22 22 C 1.50695 * 109.46809 * 90.00139 * 21 20 16 23 23 H 1.07999 * 120.00635 * 0.02562 * 22 21 20 24 24 C 1.37881 * 119.99588 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99888 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99924 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46907 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47364 * 119.99534 * 26 24 22 29 29 H 1.48504 * 109.46836 * 239.99648 * 26 24 22 30 30 H 1.09005 * 109.47194 * 296.04204 * 1 2 3 31 31 H 1.08999 * 109.47378 * 56.04779 * 1 2 3 32 32 H 1.09004 * 109.47427 * 176.04542 * 1 2 3 33 33 H 1.08994 * 109.47545 * 53.95809 * 3 2 1 34 34 H 1.09006 * 109.46827 * 173.95462 * 3 2 1 35 35 H 1.08997 * 109.46864 * 299.99708 * 4 3 2 36 36 H 1.08993 * 109.46996 * 60.00051 * 4 3 2 37 37 H 1.09003 * 109.47010 * 299.99823 * 5 4 3 38 38 H 1.08999 * 109.47546 * 59.99438 * 5 4 3 39 39 H 1.08001 * 120.00036 * 359.97438 * 7 6 5 40 40 H 1.07996 * 120.00399 * 180.23017 * 8 7 6 41 41 H 1.08001 * 120.00016 * 179.72165 * 9 8 7 42 42 H 1.07997 * 120.00345 * 179.97438 * 10 9 8 43 43 H 1.07997 * 120.00013 * 0.02562 * 11 6 5 44 44 H 1.08001 * 118.67993 * 179.97438 * 14 13 12 45 45 H 1.08002 * 125.76328 * 359.93061 * 18 17 12 46 46 H 1.08997 * 109.46820 * 210.00471 * 21 20 16 47 47 H 1.08996 * 109.46904 * 330.00105 * 21 20 16 48 48 H 0.97001 * 119.99480 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1801 3.4857 -1.3185 6 6 1.8211 4.1616 -2.6166 7 6 2.6800 4.0841 -3.6969 8 6 2.3484 4.7000 -4.8892 9 6 1.1626 5.4023 -4.9979 10 6 0.3061 5.4843 -3.9160 11 6 0.6353 4.8639 -2.7253 12 6 1.9639 -0.7201 1.0695 13 7 2.8031 -0.1625 1.9355 14 6 3.2815 -0.8445 2.9609 15 7 2.9639 -2.1003 3.1879 16 6 2.1303 -2.7481 2.3757 17 6 1.5918 -2.0636 1.2686 18 6 0.7530 -2.9728 0.5884 19 7 0.7716 -4.1080 1.2266 20 7 1.6193 -4.0111 2.3374 21 6 1.9008 -5.0807 3.2983 22 6 0.8958 -5.0257 4.4198 23 1 0.1242 -4.2700 4.4170 24 6 0.9613 -5.9402 5.4496 25 7 1.9006 -6.8607 5.4528 26 14 -0.2849 -5.8726 6.8395 27 1 -1.2309 -4.7527 6.6021 28 1 -1.0361 -7.1525 6.8937 29 1 0.4218 -5.6584 8.1279 30 1 -0.3634 0.4512 0.9234 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5611 1.9274 0.8309 34 1 3.0797 1.3444 0.1082 35 1 2.0657 1.5016 -2.1491 36 1 0.5471 2.0845 -1.4265 37 1 1.7461 4.0418 -0.4875 38 1 3.2644 3.4584 -1.2103 39 1 3.6086 3.5394 -3.6105 40 1 3.0176 4.6363 -5.7344 41 1 0.9057 5.8873 -5.9281 42 1 -0.6200 6.0333 -4.0008 43 1 -0.0335 4.9285 -1.8798 44 1 3.9615 -0.3511 3.6397 45 1 0.1877 -2.7613 -0.3072 46 1 1.8336 -6.0463 2.7971 47 1 2.9044 -4.9505 3.7031 48 1 1.9464 -7.5043 6.1771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:04 Heat of formation + Delta-G solvation = 144.393788 kcal Electronic energy + Delta-G solvation = -29159.347208 eV Core-core repulsion = 25215.907432 eV Total energy + Delta-G solvation = -3943.439776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.175 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.62629 -39.67987 -39.00485 -37.57958 -34.79205 -33.76342 -32.47159 -31.48868 -31.20130 -30.80899 -29.50306 -27.54470 -26.95159 -25.64558 -23.72306 -23.22840 -22.88825 -22.64138 -21.47066 -20.89558 -20.00695 -17.68897 -17.43191 -16.99668 -16.72400 -16.33294 -16.00856 -15.57527 -15.46526 -14.89601 -14.84786 -14.57953 -14.28591 -13.99279 -13.88808 -13.67672 -13.55730 -13.46622 -13.15005 -12.93695 -12.42688 -12.19714 -12.14194 -11.94798 -11.79030 -11.64677 -11.35785 -11.20356 -11.11689 -11.04954 -10.87347 -10.77738 -10.75533 -10.32530 -10.19958 -9.81560 -9.29555 -9.23919 -9.00619 -8.82234 -8.63579 -8.36220 -7.89065 -6.25412 -4.32149 1.02345 1.03663 1.08245 1.74471 2.89348 2.95666 3.20883 3.28023 3.33759 3.34162 3.51245 4.19178 4.29500 4.35270 4.46629 4.49744 4.63814 4.68619 4.74738 4.80609 4.88076 4.97248 5.02280 5.10163 5.12061 5.16011 5.20730 5.24604 5.27658 5.33642 5.44772 5.47159 5.57408 5.65530 5.70968 5.74926 5.76406 5.88852 6.04465 6.15262 6.19981 6.27636 6.33451 6.44558 6.61809 6.69568 6.98836 7.03639 7.08452 7.28023 7.61909 7.77612 7.86747 8.12580 8.61119 8.72237 9.33119 10.82867 Molecular weight = 351.18amu Principal moments of inertia in cm(-1) A = 0.025822 B = 0.001751 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.090567 B =15982.545461 C =16084.873688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.474 5.474 3 C 0.064 3.936 4 C -0.114 4.114 5 C -0.080 4.080 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.118 4.118 12 C 0.431 3.569 13 N -0.598 5.598 14 C 0.349 3.651 15 N -0.534 5.534 16 C 0.351 3.649 17 C -0.297 4.297 18 C 0.070 3.930 19 N -0.235 5.235 20 N -0.331 5.331 21 C 0.262 3.738 22 C -0.534 4.534 23 H 0.062 0.938 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.273 1.273 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.197 0.803 45 H 0.189 0.811 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 23.833 -17.951 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.190 5.190 3 C -0.062 4.062 4 C -0.151 4.151 5 C -0.118 4.118 6 C -0.077 4.077 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.136 4.136 12 C 0.182 3.818 13 N -0.323 5.323 14 C 0.055 3.945 15 N -0.256 5.256 16 C 0.103 3.897 17 C -0.314 4.314 18 C -0.125 4.125 19 N -0.051 5.051 20 N -0.118 5.118 21 C 0.146 3.854 22 C -0.573 4.573 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.528 5.528 26 Si 0.735 3.265 27 H -0.197 1.197 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.213 0.787 45 H 0.205 0.795 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.368 22.370 -17.490 28.398 hybrid contribution -1.020 0.627 0.839 1.462 sum -1.388 22.997 -16.650 28.426 Atomic orbital electron populations 1.22664 0.83403 1.04256 1.02003 1.58610 1.09411 1.15321 1.35676 1.22101 1.02061 0.85338 0.96725 1.21652 1.01314 0.94277 0.97895 1.20564 1.01858 0.95180 0.94173 1.19918 0.94563 0.97446 0.95771 1.21103 0.99688 0.99805 0.92880 1.21164 0.97030 0.97802 0.97695 1.21149 0.94891 0.99845 0.98737 1.21153 0.99548 0.99705 0.93338 1.21080 0.96623 0.98002 0.97927 1.19432 0.88595 0.88250 0.85550 1.68332 1.18381 1.38905 1.06720 1.24516 0.93243 0.85572 0.91172 1.67526 1.17043 1.10185 1.30814 1.19030 0.92165 0.87862 0.90676 1.19683 1.11537 0.96527 1.03636 1.23574 0.99141 0.89811 1.00004 1.76979 1.09328 1.21912 0.96874 1.49524 1.32808 1.08477 1.20990 1.19834 0.98283 0.82856 0.84451 1.21275 1.14093 1.15978 1.05964 0.92001 1.24903 0.96032 0.94668 0.98071 1.69928 1.32600 1.17117 1.33133 0.86283 0.80824 0.78104 0.81330 1.19723 1.20588 1.20563 0.93986 0.89621 0.89759 0.92985 0.88963 0.90840 0.91614 0.90820 0.90576 0.86000 0.86180 0.86314 0.86215 0.86124 0.78695 0.79453 0.92657 0.92209 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.08 60.06 0.55 0.77 16 2 N -0.47 -5.70 4.78 -180.65 -0.86 -6.56 16 3 C 0.06 0.64 4.24 -3.82 -0.02 0.62 16 4 C -0.11 -0.87 5.13 -26.73 -0.14 -1.01 16 5 C -0.08 -0.55 5.35 -27.89 -0.15 -0.69 16 6 C -0.08 -0.58 5.13 -104.63 -0.54 -1.12 16 7 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 8 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 9 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 10 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 11 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 12 C 0.43 6.77 6.42 -154.85 -0.99 5.78 16 13 N -0.60 -9.40 8.76 -13.62 -0.12 -9.52 16 14 C 0.35 5.78 12.24 -92.11 -1.13 4.65 16 15 N -0.53 -11.14 10.47 -13.97 -0.15 -11.29 16 16 C 0.35 7.71 8.04 -156.24 -1.26 6.45 16 17 C -0.30 -5.45 5.76 -106.82 -0.61 -6.06 16 18 C 0.07 1.20 10.79 -17.11 -0.18 1.01 16 19 N -0.24 -5.01 12.45 30.80 0.38 -4.63 16 20 N -0.33 -7.89 3.63 -61.64 -0.22 -8.11 16 21 C 0.26 6.96 6.19 -5.19 -0.03 6.93 16 22 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 23 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 26 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.63 6.30 -51.93 -0.33 0.30 16 32 H 0.08 0.84 5.15 -51.93 -0.27 0.57 16 33 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.09 1.01 7.54 -51.93 -0.39 0.62 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.48 6.47 -51.93 -0.34 0.14 16 37 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.20 2.42 8.06 -52.49 -0.42 1.99 16 45 H 0.19 2.33 6.78 -52.49 -0.36 1.97 16 46 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 48 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -32.68 400.56 -12.82 -45.50 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.71 Total: -0.47 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -6.89 Total: -2.63 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.23 Total: -64.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.68 -12.82 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.890 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds