Wall clock time and date at job start Tue Mar 31 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00285 * 2 1 4 4 H 1.48492 * 109.47415 * 270.00647 * 3 2 1 5 5 H 1.48499 * 109.46831 * 30.00472 * 3 2 1 6 6 H 1.48497 * 109.47075 * 150.00157 * 3 2 1 7 7 C 1.37879 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47210 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46992 * 179.97438 * 11 10 9 13 13 C 1.35925 * 119.62291 * 90.00100 * 12 11 10 14 14 C 1.35493 * 120.67189 * 179.97438 * 13 12 11 15 15 F 1.35098 * 120.04359 * 180.02562 * 14 13 12 16 16 C 1.40324 * 119.91578 * 359.97438 * 14 13 12 17 17 C 1.36441 * 119.26668 * 359.97438 * 16 14 13 18 18 I 2.09497 * 120.33301 * 180.02562 * 17 16 14 19 19 C 1.34649 * 119.62498 * 269.72250 * 12 11 10 20 20 O 1.22093 * 119.96925 * 0.02562 * 19 12 11 21 21 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47561 * 60.00082 * 9 7 2 23 23 H 1.09000 * 109.46976 * 299.99776 * 9 7 2 24 24 H 1.09000 * 109.47531 * 59.99538 * 10 9 7 25 25 H 1.09008 * 109.47250 * 300.00113 * 10 9 7 26 26 H 1.09000 * 109.46884 * 60.00289 * 11 10 9 27 27 H 1.09000 * 109.46955 * 299.99604 * 11 10 9 28 28 H 1.08003 * 119.66358 * 359.97438 * 13 12 11 29 29 H 1.08002 * 120.36699 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 -0.0005 13 6 2.8697 -6.6112 1.1808 14 6 3.7496 -7.6412 1.2050 15 9 4.1757 -8.1392 2.3864 16 6 4.2171 -8.1907 0.0015 17 6 3.7753 -7.6766 -1.1826 18 53 4.4507 -8.4720 -2.9992 19 6 2.8596 -6.6103 -1.1712 20 8 2.4538 -6.1437 -2.2240 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5568 -0.8902 23 1 0.6247 -2.5571 0.8897 24 1 2.8719 -3.6043 0.8894 25 1 2.8719 -3.6043 -0.8906 26 1 0.8533 -5.0451 -0.8897 27 1 0.8539 -5.0446 0.8904 28 1 2.5122 -6.1916 2.1096 29 1 4.9189 -9.0116 0.0123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097377700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:06 Heat of formation + Delta-G solvation = -41.087301 kcal Electronic energy + Delta-G solvation = -16388.078631 eV Core-core repulsion = 13278.430778 eV Total energy + Delta-G solvation = -3109.647853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 350.987 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.04260 -41.51780 -36.98790 -35.82588 -33.71961 -31.80970 -30.48576 -28.29581 -27.35860 -24.56782 -23.20805 -22.46939 -20.53847 -18.39543 -17.85303 -16.89183 -16.40211 -16.27092 -15.41173 -15.04850 -14.57083 -14.48107 -14.28067 -13.80437 -13.32404 -12.86265 -12.32355 -11.80794 -11.65892 -11.59494 -11.26849 -10.91584 -10.86445 -10.61601 -10.17368 -9.97435 -9.93781 -9.81302 -9.50973 -9.21541 -8.43491 -8.07173 -6.08436 -4.11383 0.26170 0.85935 1.40556 2.51892 3.23241 3.28290 3.34680 3.37583 3.83609 4.26053 4.36584 4.40192 4.69148 5.02194 5.25877 5.28625 5.36787 5.48000 5.61494 5.76999 6.16644 6.27794 6.58139 6.78316 6.84573 7.51754 7.63522 7.80473 7.89073 8.30146 8.94284 9.53388 11.02812 Molecular weight = 350.99amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.003233 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.358263 B = 8659.371720 C = 9643.407033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.086 3.914 12 N -0.472 5.472 13 C 0.140 3.860 14 C -0.031 4.031 15 F -0.127 7.127 16 C 0.002 3.998 17 C -0.218 4.218 18 I 0.010 6.990 19 C 0.520 3.480 20 O -0.512 6.512 21 H 0.262 0.738 22 H 0.021 0.979 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.180 0.820 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.876 -22.584 -0.496 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.033 4.033 12 N -0.180 5.180 13 C 0.007 3.993 14 C -0.057 4.057 15 F -0.106 7.106 16 C -0.024 4.024 17 C -0.361 4.361 18 I 0.157 6.843 19 C 0.317 3.683 20 O -0.391 6.391 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.197 0.803 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.867 -22.653 -2.434 24.447 hybrid contribution 0.177 1.312 1.492 1.995 sum 9.044 -21.340 -0.942 23.197 Atomic orbital electron populations 1.69946 1.06052 1.26808 1.50480 1.25007 0.94875 0.99336 0.95109 0.86567 0.79797 0.83275 0.78238 1.20549 1.21141 1.19868 1.21153 0.93030 0.90786 1.51131 0.92653 1.19031 0.93690 0.90760 0.97654 1.22046 0.99955 0.92522 1.01557 1.22619 0.90938 0.84458 1.05302 1.45688 1.37525 1.29627 1.05132 1.22030 0.92963 0.92342 0.91924 1.16279 1.06046 1.01528 0.81880 1.91530 1.89040 1.86725 1.43344 1.21434 0.94535 0.96467 0.89914 1.25368 1.08273 1.04710 0.97789 1.96695 1.85989 1.80726 1.20905 1.16532 0.83549 0.84446 0.83812 1.91067 1.57953 1.61421 1.28613 0.92862 0.96018 0.96270 0.92707 0.92129 0.87657 0.88735 0.80268 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 15 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 15 10 C -0.12 -2.35 5.48 -26.73 -0.15 -2.50 15 11 C 0.09 1.31 5.34 -4.04 -0.02 1.29 15 12 N -0.47 -6.47 2.59 -119.67 -0.31 -6.78 15 13 C 0.14 1.47 10.26 -16.72 -0.17 1.30 15 14 C -0.03 -0.32 7.26 -39.78 -0.29 -0.61 15 15 F -0.13 -1.29 17.26 2.25 0.04 -1.25 15 16 C 0.00 0.02 9.79 -39.45 -0.39 -0.37 15 17 C -0.22 -2.81 6.22 -39.36 -0.24 -3.06 15 18 I 0.01 0.12 39.71 -73.02 -2.90 -2.78 15 19 C 0.52 8.11 7.40 -15.44 -0.11 7.99 15 20 O -0.51 -9.76 15.90 4.83 0.08 -9.68 15 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.06 1.27 8.14 -51.92 -0.42 0.85 15 26 H 0.11 1.75 7.38 -51.93 -0.38 1.36 15 27 H 0.09 1.17 8.02 -51.93 -0.42 0.76 15 28 H 0.18 1.35 8.04 -52.48 -0.42 0.93 15 29 H 0.15 1.19 8.06 -52.49 -0.42 0.76 15 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -31.28 291.00 -7.79 -39.07 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -2.88 Total: -5.19 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.92 Total: -8.65 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.43 Total: -32.29 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 53 Polarization: 0.12 SS G_CDS: -2.90 Total: -2.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.28 -7.79 -39.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.020 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds