Wall clock time and date at job start Tue Mar 31 2020 04:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35693 * 116.99913 * 2 1 4 4 C 1.38823 * 120.16779 * 89.99968 * 3 2 1 5 5 F 1.35100 * 119.97587 * 359.97438 * 4 3 2 6 6 C 1.38331 * 120.04606 * 179.97438 * 4 3 2 7 7 I 2.09505 * 119.80836 * 180.02562 * 6 4 3 8 8 C 1.38775 * 120.37892 * 0.04355 * 6 4 3 9 9 C 1.37636 * 120.33418 * 359.97438 * 8 6 4 10 10 C 1.39917 * 119.94347 * 0.23539 * 9 8 6 11 11 C 1.47513 * 120.18668 * 179.72111 * 10 9 8 12 12 O 1.21816 * 120.00124 * 180.02562 * 11 10 9 13 13 C 1.41819 * 119.99913 * 0.02562 * 11 10 9 14 14 H 1.07999 * 120.00078 * 353.20647 * 13 11 10 15 15 C 1.40319 * 120.00080 * 173.20648 * 13 11 10 16 16 N 1.30544 * 119.99745 * 6.09955 * 15 13 11 17 17 Si 1.86798 * 120.00121 * 186.09917 * 15 13 11 18 18 H 1.48501 * 109.46994 * 94.98797 * 17 15 13 19 19 H 1.48503 * 109.47053 * 214.98565 * 17 15 13 20 20 H 1.48496 * 109.47312 * 334.98715 * 17 15 13 21 21 H 1.09004 * 109.47202 * 300.00662 * 1 2 3 22 22 H 1.09002 * 109.46834 * 60.00169 * 1 2 3 23 23 H 1.08997 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.08006 * 119.83290 * 179.97438 * 8 6 4 25 25 H 1.08004 * 120.03013 * 179.97438 * 9 8 6 26 26 H 0.97004 * 119.99523 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 2.3617 1.8306 1.2002 5 9 2.0559 1.2316 2.3719 6 6 2.9902 3.0629 1.1973 7 53 3.4655 3.9940 3.0129 8 6 3.3073 3.6862 -0.0014 9 6 3.0002 3.0842 -1.2004 10 6 2.3606 1.8398 -1.2135 11 6 2.0234 1.1926 -2.4955 12 8 1.4661 0.1094 -2.5029 13 6 2.3480 1.8314 -3.7193 14 1 2.7411 2.8373 -3.7157 15 6 2.1585 1.1566 -4.9349 16 7 1.5738 -0.0106 -4.9492 17 14 2.7427 1.9282 -6.5325 18 1 4.0954 1.4136 -6.8651 19 1 1.7984 1.5803 -7.6246 20 1 2.7988 3.4040 -6.3780 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.7976 4.6485 0.0066 25 1 3.2489 3.5738 -2.1304 26 1 1.4425 -0.4769 -5.7896 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098210944.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:44 Heat of formation + Delta-G solvation = -79.708431 kcal Electronic energy + Delta-G solvation = -16708.517628 eV Core-core repulsion = 13526.787853 eV Total energy + Delta-G solvation = -3181.729775 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 349.960 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.66150 -39.39944 -36.92964 -36.33789 -32.82994 -31.81452 -29.81349 -28.30667 -26.68049 -26.20364 -22.68503 -22.00818 -20.07973 -17.59480 -16.98710 -16.16884 -15.93110 -15.68299 -15.23171 -14.54199 -14.31729 -13.93765 -13.46937 -13.14920 -12.53103 -12.41955 -12.02989 -11.72342 -11.56302 -11.31040 -11.11715 -10.96048 -10.49375 -10.34574 -10.01044 -9.83668 -9.38096 -9.10579 -8.33692 -8.23997 -7.60657 -6.47106 -5.06561 1.09890 1.16159 1.39135 2.95226 3.04776 3.07508 3.47473 3.88049 4.14562 4.35511 4.55585 5.11867 5.32186 5.50190 5.58368 5.72229 5.88785 5.97358 6.17309 6.20778 6.30598 6.54571 6.70811 6.97996 7.07847 7.84124 8.03395 8.60537 8.62260 10.13712 10.34601 Molecular weight = 349.96amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.004063 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.369080 B = 6889.545228 C = 7939.366109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.304 6.304 3 C 0.090 3.910 4 C 0.095 3.905 5 F -0.128 7.128 6 C -0.141 4.141 7 I -0.039 7.039 8 C -0.080 4.080 9 C -0.091 4.091 10 C -0.075 4.075 11 C 0.380 3.620 12 O -0.514 6.514 13 C -0.510 4.510 14 H 0.077 0.923 15 C 0.078 3.922 16 N -0.728 5.728 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.260 1.260 21 H 0.029 0.971 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.134 0.866 25 H 0.149 0.851 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 9.595 12.108 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.220 6.220 3 C 0.042 3.958 4 C 0.072 3.928 5 F -0.106 7.106 6 C -0.282 4.282 7 I 0.109 6.891 8 C -0.101 4.101 9 C -0.111 4.111 10 C -0.077 4.077 11 C 0.274 3.726 12 O -0.402 6.402 13 C -0.540 4.540 14 H 0.095 0.905 15 C -0.146 4.146 16 N -0.356 5.356 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.184 1.184 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.108 0.892 24 H 0.152 0.848 25 H 0.167 0.833 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.908 9.336 13.369 16.563 hybrid contribution -0.057 0.004 -1.524 1.525 sum 2.850 9.340 11.845 15.351 Atomic orbital electron populations 1.22820 0.78705 1.02972 0.99689 1.85995 1.19970 1.22395 1.93633 1.18928 0.99369 0.87732 0.89738 1.17811 1.01929 0.91563 0.81465 1.91493 1.91068 1.83049 1.45038 1.24183 1.09783 0.97264 0.97020 1.96652 1.93413 1.77665 1.21331 1.20909 0.99117 0.99728 0.90332 1.21612 0.97063 0.94548 0.97897 1.22672 0.93974 0.93583 0.97516 1.18001 0.82541 0.87192 0.84855 1.90570 1.40307 1.21630 1.87671 1.20932 1.39688 1.01910 0.91511 0.90525 1.25985 0.93268 0.94392 1.00939 1.69953 1.26385 1.11172 1.28107 0.86314 0.79364 0.80500 0.80596 1.19327 1.20055 1.18376 0.95243 0.92518 0.89199 0.84797 0.83320 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 10.48 101.05 1.06 2.07 15 2 O -0.30 -6.97 8.72 -40.63 -0.35 -7.33 15 3 C 0.09 1.94 5.75 -38.57 -0.22 1.72 15 4 C 0.10 1.80 7.26 -39.33 -0.29 1.52 15 5 F -0.13 -2.38 16.43 2.25 0.04 -2.35 15 6 C -0.14 -2.33 6.21 -39.35 -0.24 -2.57 15 7 I -0.04 -0.52 39.73 -73.02 -2.90 -3.43 15 8 C -0.08 -1.25 9.73 -39.60 -0.39 -1.63 15 9 C -0.09 -1.65 9.43 -39.17 -0.37 -2.02 15 10 C -0.08 -1.67 5.90 -104.69 -0.62 -2.29 15 11 C 0.38 10.07 6.90 -34.43 -0.24 9.83 15 12 O -0.51 -15.26 12.56 -16.77 -0.21 -15.47 15 13 C -0.51 -12.95 8.83 -37.43 -0.33 -13.28 15 14 H 0.08 1.72 6.07 -52.49 -0.32 1.40 15 15 C 0.08 1.97 5.49 -17.32 -0.10 1.87 15 16 N -0.73 -19.76 11.76 55.57 0.65 -19.11 15 17 Si 0.91 18.07 29.57 -169.99 -5.03 13.04 15 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 20 H -0.26 -4.96 7.11 56.52 0.40 -4.55 15 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.06 1.18 7.47 -51.93 -0.39 0.80 15 23 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.13 1.66 8.06 -52.48 -0.42 1.24 15 25 H 0.15 2.46 6.22 -52.48 -0.33 2.14 15 26 H 0.28 6.74 8.29 -40.82 -0.34 6.40 15 LS Contribution 268.46 15.07 4.05 4.05 Total: -1.00 -29.71 268.46 -6.92 -36.63 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -1.43 Total: -1.26 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.73 Total: -4.78 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.65 Total: -19.11 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.56 Total: -22.79 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 53 Polarization: -0.52 SS G_CDS: -2.90 Total: -3.43 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.71 -6.92 -36.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098210944.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.080 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds