Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39019 * 124.29291 * 2 1 4 4 C 1.39022 * 131.64531 * 0.02562 * 3 2 1 5 5 C 1.38044 * 120.15142 * 179.19909 * 4 3 2 6 6 C 1.38653 * 120.64677 * 0.70342 * 5 4 3 7 7 Br 1.89103 * 119.96474 * 179.56247 * 6 5 4 8 8 C 1.38041 * 120.07419 * 359.53242 * 6 5 4 9 9 C 1.39249 * 119.70557 * 0.03100 * 8 6 5 10 10 C 1.47871 * 133.22409 * 179.97438 * 9 8 6 11 11 N 1.31446 * 127.50306 * 359.97438 * 10 9 8 12 12 N 1.29005 * 119.99994 * 179.70571 * 11 10 9 13 13 C 1.34768 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21804 * 120.00334 * 359.97438 * 13 12 11 15 15 C 1.41393 * 119.99866 * 180.02562 * 13 12 11 16 16 H 1.07991 * 120.00004 * 15.28878 * 15 13 12 17 17 C 1.40262 * 119.99817 * 195.28332 * 15 13 12 18 18 N 1.30570 * 120.00007 * 204.64145 * 17 15 13 19 19 Si 1.86797 * 119.99969 * 24.64014 * 17 15 13 20 20 H 1.48495 * 109.47225 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47243 * 119.99943 * 19 17 15 22 22 H 1.48497 * 109.47214 * 239.99565 * 19 17 15 23 23 C 1.34395 * 124.29152 * 180.02562 * 2 1 3 24 24 O 1.21649 * 126.06066 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46699 * 300.00094 * 1 2 3 27 27 H 1.09005 * 109.46882 * 60.00137 * 1 2 3 28 28 H 1.08008 * 119.91848 * 359.97338 * 4 3 2 29 29 H 1.07999 * 119.67949 * 180.28420 * 5 4 3 30 30 H 1.08006 * 120.14673 * 180.02562 * 8 6 5 31 31 H 0.97003 * 119.99521 * 0.02562 * 12 11 10 32 32 H 0.97006 * 119.99826 * 1.92731 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2483 1.1485 0.0000 4 6 1.9105 2.4971 0.0005 5 6 2.8998 3.4597 0.0170 6 6 4.2382 3.0976 0.0187 7 35 5.5777 4.4324 0.0290 8 6 4.5941 1.7639 0.0135 9 6 3.6033 0.7854 0.0059 10 6 3.6400 -0.6928 -0.0014 11 7 4.7023 -1.4670 -0.0029 12 7 4.5655 -2.7498 -0.0039 13 6 5.6547 -3.5435 -0.0060 14 8 6.7682 -3.0498 -0.0073 15 6 5.5047 -4.9495 -0.0076 16 1 4.5502 -5.3904 -0.2539 17 6 6.5959 -5.7715 0.3105 18 7 6.6394 -6.9990 -0.1323 19 14 7.9866 -5.1099 1.3676 20 1 7.6997 -3.7009 1.7380 21 1 8.1063 -5.9314 2.5990 22 1 9.2598 -5.1716 0.6059 23 6 2.2222 -1.1103 -0.0005 24 8 1.8132 -2.2560 -0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.8715 2.7922 0.0005 29 1 2.6287 4.5051 0.0219 30 1 5.6363 1.4805 0.0152 31 1 3.6788 -3.1430 -0.0040 32 1 5.9311 -7.3337 -0.7043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101644821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = 5.953982 kcal Electronic energy + Delta-G solvation = -21729.182299 eV Core-core repulsion = 18123.086752 eV Total energy + Delta-G solvation = -3606.095547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 351.001 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63725 -39.52308 -38.38658 -36.37440 -35.96797 -33.38555 -32.82430 -31.76201 -30.06598 -29.39730 -27.57264 -26.90660 -24.46126 -22.44185 -21.50489 -21.14034 -19.98624 -18.68477 -17.91418 -16.95340 -16.19628 -16.12771 -15.71517 -15.52469 -14.70683 -14.56507 -14.21268 -13.96159 -13.69872 -13.48286 -13.34365 -13.26098 -12.65297 -12.56943 -12.29567 -11.93979 -11.66126 -11.37974 -11.32201 -11.03056 -10.36822 -10.30489 -10.00555 -9.79579 -9.47764 -9.40439 -9.21327 -8.40549 -8.18884 -7.63803 -7.54789 -5.44503 0.53027 1.04680 1.55824 1.71737 2.57496 3.11759 3.26618 3.31752 3.46615 3.58465 3.80465 3.96208 4.12702 4.22806 4.48914 4.75576 4.84328 5.02014 5.06570 5.09567 5.10754 5.23349 5.40419 5.57179 5.72925 5.86059 5.93205 6.10963 6.39466 6.58441 6.85073 7.07908 7.30320 7.55540 7.83110 8.07571 8.28926 8.50782 9.69444 9.80270 Molecular weight = 351.00amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003357 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.549043 B = 8339.563366 C =10498.859697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.543 5.543 3 C 0.155 3.845 4 C -0.130 4.130 5 C -0.065 4.065 6 C -0.111 4.111 7 Br -0.052 7.052 8 C -0.032 4.032 9 C -0.039 4.039 10 C -0.097 4.097 11 N -0.059 5.059 12 N -0.478 5.478 13 C 0.526 3.474 14 O -0.572 6.572 15 C -0.578 4.578 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.784 5.784 19 Si 1.081 2.919 20 H -0.248 1.248 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.546 3.454 24 O -0.521 6.521 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.397 0.603 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 21.440 0.708 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.264 5.264 3 C 0.055 3.945 4 C -0.152 4.152 5 C -0.087 4.087 6 C -0.192 4.192 7 Br 0.033 6.967 8 C -0.054 4.054 9 C -0.045 4.045 10 C -0.271 4.271 11 N 0.106 4.894 12 N -0.229 5.229 13 C 0.342 3.658 14 O -0.459 6.459 15 C -0.613 4.613 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.408 5.408 19 Si 0.905 3.095 20 H -0.172 1.172 21 H -0.227 1.227 22 H -0.202 1.202 23 C 0.336 3.664 24 O -0.395 6.395 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.239 0.761 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.198 20.830 1.340 22.079 hybrid contribution -3.445 -0.407 -0.942 3.595 sum -10.643 20.422 0.398 23.033 Atomic orbital electron populations 1.21846 0.77048 1.04813 1.02532 1.45241 1.07036 1.05360 1.68731 1.18291 0.89410 0.87952 0.98850 1.20096 0.99956 0.88500 1.06599 1.20770 0.90107 0.99583 0.98225 1.21426 0.93133 0.92729 1.11890 1.96693 1.51399 1.50690 1.97908 1.20559 0.99965 0.89258 0.95644 1.18202 0.91872 0.89883 1.04592 1.21922 0.88529 0.93222 1.23421 1.71442 1.26747 0.95151 0.96016 1.45936 1.14149 1.00425 1.62365 1.17306 0.81605 0.86774 0.80109 1.90567 1.23150 1.75694 1.56456 1.21165 1.01400 0.89641 1.49060 0.89862 1.27292 1.00111 0.92753 0.94583 1.70536 1.31827 1.16752 1.21706 0.83296 0.73991 0.77149 0.75017 1.17232 1.22669 1.20166 1.19135 0.87176 0.83984 0.76066 1.90786 1.79253 1.18571 1.50913 0.89007 0.90983 0.91011 0.84850 0.84461 0.83822 0.76101 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.93 59.85 0.65 1.39 16 2 N -0.54 -7.42 3.13 -121.78 -0.38 -7.80 16 3 C 0.16 2.01 6.74 -83.54 -0.56 1.45 16 4 C -0.13 -1.25 9.88 -39.36 -0.39 -1.63 16 5 C -0.07 -0.62 9.76 -39.50 -0.39 -1.01 16 6 C -0.11 -1.29 6.22 -39.50 -0.25 -1.53 16 7 Br -0.05 -0.55 33.70 -68.01 -2.29 -2.84 16 8 C -0.03 -0.45 9.83 -39.28 -0.39 -0.84 16 9 C -0.04 -0.61 6.35 -104.81 -0.67 -1.28 16 10 C -0.10 -1.82 7.52 -80.18 -0.60 -2.43 16 11 N -0.06 -1.30 10.67 34.76 0.37 -0.93 16 12 N -0.48 -11.30 5.87 29.05 0.17 -11.13 16 13 C 0.53 14.02 7.15 -15.06 -0.11 13.91 16 14 O -0.57 -16.36 13.05 5.10 0.07 -16.30 16 15 C -0.58 -15.47 9.59 -37.62 -0.36 -15.83 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.07 5.47 -17.33 -0.09 1.98 16 18 N -0.78 -20.70 13.64 55.56 0.76 -19.94 16 19 Si 1.08 25.79 27.28 -169.99 -4.64 21.16 16 20 H -0.25 -6.24 5.86 56.52 0.33 -5.91 16 21 H -0.30 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 C 0.55 9.69 7.92 -12.52 -0.10 9.59 16 24 O -0.52 -10.35 15.23 5.23 0.08 -10.27 16 25 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.40 8.92 6.01 -190.11 -1.14 7.77 16 32 H 0.29 7.31 8.72 -40.82 -0.36 6.95 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -30.33 310.83 -7.72 -38.05 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.30 Total: 1.54 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -3.25 Total: 3.77 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.92 Total: -39.80 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: 0.15 Total: -26.57 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.64 Total: 21.16 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.33 -7.72 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101644821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds