Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39019 * 124.29291 * 2 1 4 4 C 1.39022 * 131.64531 * 0.02562 * 3 2 1 5 5 C 1.38044 * 120.15142 * 179.19909 * 4 3 2 6 6 C 1.38653 * 120.64677 * 0.70342 * 5 4 3 7 7 Br 1.89103 * 119.96474 * 179.56247 * 6 5 4 8 8 C 1.38041 * 120.07419 * 359.53242 * 6 5 4 9 9 C 1.39249 * 119.70557 * 0.03100 * 8 6 5 10 10 C 1.47871 * 133.22409 * 179.97438 * 9 8 6 11 11 N 1.31446 * 127.50306 * 359.97438 * 10 9 8 12 12 N 1.29005 * 119.99994 * 179.70571 * 11 10 9 13 13 C 1.34768 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21804 * 120.00334 * 359.97438 * 13 12 11 15 15 C 1.41393 * 119.99866 * 180.02562 * 13 12 11 16 16 H 1.07991 * 120.00004 * 15.28878 * 15 13 12 17 17 C 1.40262 * 119.99817 * 195.28332 * 15 13 12 18 18 N 1.30570 * 120.00007 * 204.64145 * 17 15 13 19 19 Si 1.86797 * 119.99969 * 24.64014 * 17 15 13 20 20 H 1.48495 * 109.47225 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47243 * 119.99943 * 19 17 15 22 22 H 1.48497 * 109.47214 * 239.99565 * 19 17 15 23 23 C 1.34395 * 124.29152 * 180.02562 * 2 1 3 24 24 O 1.21649 * 126.06066 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46699 * 300.00094 * 1 2 3 27 27 H 1.09005 * 109.46882 * 60.00137 * 1 2 3 28 28 H 1.08008 * 119.91848 * 359.97338 * 4 3 2 29 29 H 1.07999 * 119.67949 * 180.28420 * 5 4 3 30 30 H 1.08006 * 120.14673 * 180.02562 * 8 6 5 31 31 H 0.97003 * 119.99521 * 0.02562 * 12 11 10 32 32 H 0.97006 * 119.99826 * 1.92731 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2483 1.1485 0.0000 4 6 1.9105 2.4971 0.0005 5 6 2.8998 3.4597 0.0170 6 6 4.2382 3.0976 0.0187 7 35 5.5777 4.4324 0.0290 8 6 4.5941 1.7639 0.0135 9 6 3.6033 0.7854 0.0059 10 6 3.6400 -0.6928 -0.0014 11 7 4.7023 -1.4670 -0.0029 12 7 4.5655 -2.7498 -0.0039 13 6 5.6547 -3.5435 -0.0060 14 8 6.7682 -3.0498 -0.0073 15 6 5.5047 -4.9495 -0.0076 16 1 4.5502 -5.3904 -0.2539 17 6 6.5959 -5.7715 0.3105 18 7 6.6394 -6.9990 -0.1323 19 14 7.9866 -5.1099 1.3676 20 1 7.6997 -3.7009 1.7380 21 1 8.1063 -5.9314 2.5990 22 1 9.2598 -5.1716 0.6059 23 6 2.2222 -1.1103 -0.0005 24 8 1.8132 -2.2560 -0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 0.8715 2.7922 0.0005 29 1 2.6287 4.5051 0.0219 30 1 5.6363 1.4805 0.0152 31 1 3.6788 -3.1430 -0.0040 32 1 5.9311 -7.3337 -0.7043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101644821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -14.774628 kcal Electronic energy + Delta-G solvation = -21730.081159 eV Core-core repulsion = 18123.086752 eV Total energy + Delta-G solvation = -3606.994407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 351.001 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.89907 -41.18660 -39.66174 -38.15405 -37.20594 -35.40750 -34.14004 -32.69003 -31.54242 -30.39918 -28.89068 -28.42021 -25.76736 -23.49117 -22.82067 -22.72137 -21.46278 -20.50731 -19.30754 -18.25593 -17.76061 -17.45112 -16.91929 -16.85814 -16.49283 -15.84593 -15.62794 -15.47880 -15.13913 -14.72373 -14.55551 -14.47963 -14.28318 -13.69546 -13.48906 -13.39552 -12.99722 -12.95220 -12.37324 -12.30367 -12.22838 -11.60855 -11.25852 -11.23294 -10.95557 -10.91784 -10.75778 -10.39767 -9.61375 -9.43408 -8.94516 -7.52044 -0.78804 0.05237 0.53525 0.64638 1.28645 1.41625 1.47512 1.69282 1.78641 1.88528 2.05614 2.33685 2.56867 2.85297 3.03023 3.44118 3.59594 3.90753 4.03122 4.10436 4.29833 4.38099 4.49288 4.73585 4.79285 4.85440 4.89392 5.14067 5.14860 5.22998 5.41787 5.46263 5.53650 5.80186 6.19718 6.24833 6.53015 6.77156 7.74488 7.77058 Molecular weight = 351.00amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.003357 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.549043 B = 8339.563366 C =10498.859697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.533 5.533 3 C 0.158 3.842 4 C -0.105 4.105 5 C -0.041 4.041 6 C -0.116 4.116 7 Br -0.041 7.041 8 C -0.037 4.037 9 C -0.086 4.086 10 C -0.059 4.059 11 N -0.118 5.118 12 N -0.505 5.505 13 C 0.533 3.467 14 O -0.602 6.602 15 C -0.601 4.601 16 H 0.076 0.924 17 C 0.051 3.949 18 N -0.794 5.794 19 Si 1.113 2.887 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.271 1.271 23 C 0.536 3.464 24 O -0.546 6.546 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.183 0.817 29 H 0.179 0.821 30 H 0.127 0.873 31 H 0.397 0.603 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 25.568 1.052 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.253 5.253 3 C 0.058 3.942 4 C -0.127 4.127 5 C -0.062 4.062 6 C -0.196 4.196 7 Br 0.044 6.956 8 C -0.060 4.060 9 C -0.092 4.092 10 C -0.240 4.240 11 N 0.054 4.946 12 N -0.253 5.253 13 C 0.349 3.651 14 O -0.492 6.492 15 C -0.636 4.636 16 H 0.095 0.905 17 C -0.171 4.171 18 N -0.418 5.418 19 Si 0.935 3.065 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.196 1.196 23 C 0.325 3.675 24 O -0.422 6.422 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.200 0.800 29 H 0.196 0.804 30 H 0.145 0.855 31 H 0.239 0.761 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.780 24.949 1.682 26.850 hybrid contribution -2.929 -1.167 -1.088 3.335 sum -12.709 23.782 0.593 26.972 Atomic orbital electron populations 1.22264 0.73800 1.05189 1.05683 1.45261 1.08723 1.04150 1.67142 1.18573 0.87808 0.89093 0.98696 1.20622 1.02414 0.86192 1.03431 1.21330 0.88692 1.01639 0.94526 1.21620 0.94749 0.91853 1.11392 1.96728 1.51566 1.49443 1.97831 1.20522 0.99091 0.90394 0.95975 1.18294 0.94098 0.88021 1.08788 1.22837 0.89014 0.95107 1.17027 1.71409 1.28465 0.94565 1.00151 1.45165 1.12880 1.00985 1.66270 1.17179 0.81855 0.87067 0.79044 1.90515 1.24396 1.76528 1.57748 1.21229 1.01438 0.90263 1.50658 0.90536 1.28052 1.01287 0.92840 0.94963 1.70547 1.32063 1.16863 1.22297 0.82891 0.72680 0.75675 0.75298 1.19977 1.19671 1.19560 1.19130 0.87332 0.84687 0.76366 1.90767 1.79621 1.19978 1.51883 0.90213 0.87746 0.87796 0.79972 0.80412 0.85500 0.76096 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.93 127.77 1.40 2.40 16 2 N -0.53 -13.09 3.13 -657.65 -2.06 -15.15 16 3 C 0.16 3.52 6.74 38.69 0.26 3.78 16 4 C -0.11 -1.35 9.88 22.41 0.22 -1.13 16 5 C -0.04 -0.53 9.76 22.32 0.22 -0.31 16 6 C -0.12 -2.30 6.22 22.32 0.14 -2.16 16 7 Br -0.04 -0.76 33.70 -20.37 -0.69 -1.44 16 8 C -0.04 -1.01 9.83 22.47 0.22 -0.79 16 9 C -0.09 -2.59 6.35 -19.99 -0.13 -2.72 16 10 C -0.06 -2.30 7.52 44.28 0.33 -1.97 16 11 N -0.12 -5.56 10.67 -43.94 -0.47 -6.03 16 12 N -0.50 -25.57 5.87 -180.18 -1.06 -26.63 16 13 C 0.53 30.27 7.15 85.02 0.61 30.88 16 14 O -0.60 -36.47 13.05 -4.68 -0.06 -36.54 16 15 C -0.60 -34.04 9.59 23.54 0.23 -33.82 16 16 H 0.08 4.29 8.06 -2.92 -0.02 4.27 16 17 C 0.05 2.81 5.47 85.37 0.47 3.28 16 18 N -0.79 -42.97 13.64 21.87 0.30 -42.67 16 19 Si 1.11 53.84 27.28 68.60 1.87 55.71 16 20 H -0.27 -14.38 5.86 99.48 0.58 -13.80 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 C 0.54 19.01 7.92 86.83 0.69 19.70 16 24 O -0.55 -22.28 15.23 -4.18 -0.06 -22.35 16 25 H 0.08 1.39 7.58 -2.39 -0.02 1.38 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.40 19.23 6.01 -219.71 -1.32 17.91 16 32 H 0.29 15.13 8.72 -92.70 -0.81 14.32 16 Total: -1.00 -71.74 310.83 2.14 -69.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -0.28 Total: 8.35 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 4.65 Total: 17.14 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.29 Total: -90.48 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.12 Total: -58.88 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 1.87 Total: 55.71 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -0.69 Total: -1.44 kcal Total: -71.74 2.14 -69.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101644821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.825 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds