Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34976 * 125.97270 * 2 1 4 4 C 1.35232 * 107.85886 * 179.69161 * 3 2 1 5 5 C 1.40423 * 107.87096 * 0.42982 * 4 3 2 6 6 N 1.40071 * 125.97597 * 179.83066 * 5 4 3 7 7 C 1.34774 * 120.00172 * 359.71205 * 6 5 4 8 8 O 1.21800 * 120.00136 * 0.02562 * 7 6 5 9 9 C 1.41463 * 120.00267 * 180.02562 * 7 6 5 10 10 C 1.35462 * 120.00430 * 173.13719 * 9 7 6 11 11 C 1.46384 * 119.99820 * 348.89108 * 10 9 7 12 12 C 1.36664 * 126.78837 * 312.52746 * 11 10 9 13 13 N 1.35610 * 109.69836 * 180.02562 * 12 11 10 14 14 C 1.46503 * 124.78200 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47109 * 264.96189 * 14 13 12 16 16 H 1.07994 * 119.99891 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00029 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00136 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47125 * 90.00082 * 19 17 15 21 21 H 1.48503 * 109.47202 * 209.99920 * 19 17 15 22 22 H 1.48499 * 109.47420 * 330.00083 * 19 17 15 23 23 C 1.37989 * 110.43788 * 0.02562 * 13 12 11 24 24 C 1.39123 * 133.13431 * 179.71018 * 23 13 12 25 25 C 1.37776 * 119.93515 * 179.89283 * 24 23 13 26 26 C 1.38744 * 120.62698 * 0.40194 * 25 24 23 27 27 C 1.37774 * 120.29894 * 359.81971 * 26 25 24 28 28 C 1.39246 * 119.67638 * 359.97438 * 27 26 25 29 29 N 1.31235 * 108.04809 * 359.56178 * 5 4 3 30 30 H 1.09004 * 109.46837 * 270.02010 * 1 2 3 31 31 H 1.09004 * 109.46706 * 30.01727 * 1 2 3 32 32 H 1.08993 * 109.47228 * 150.02011 * 1 2 3 33 33 H 1.07996 * 126.06555 * 359.96067 * 3 2 1 34 34 H 1.08004 * 126.06539 * 180.29349 * 4 3 2 35 35 H 0.97006 * 120.00029 * 179.71068 * 6 5 4 36 36 H 1.08009 * 119.99487 * 353.13205 * 9 7 6 37 37 H 1.08002 * 120.00309 * 168.90045 * 10 9 7 38 38 H 1.08004 * 125.14734 * 0.02562 * 12 11 10 39 39 H 1.08994 * 109.46961 * 24.96639 * 14 13 12 40 40 H 1.08998 * 109.46839 * 144.96280 * 14 13 12 41 41 H 0.97005 * 119.99639 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.02934 * 0.31048 * 24 23 13 43 43 H 1.08000 * 119.68460 * 180.17935 * 25 24 23 44 44 H 1.08006 * 119.84959 * 179.79575 * 26 25 24 45 45 H 1.08001 * 120.16472 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0924 0.0000 4 6 3.5432 0.6719 0.0069 5 6 3.5373 -0.7323 0.0013 6 7 4.6673 -1.5599 0.0022 7 6 5.9006 -1.0164 0.0031 8 8 6.0326 0.1944 0.0036 9 6 7.0420 -1.8523 0.0035 10 6 8.2767 -1.3128 -0.1357 11 6 8.4225 0.0900 -0.5278 12 6 7.7755 0.7256 -1.5501 13 7 8.1703 2.0218 -1.6051 14 6 7.6828 3.0034 -2.5773 15 6 8.6348 3.0709 -3.7436 16 1 9.5147 2.4450 -3.7593 17 6 8.3818 3.9310 -4.7910 18 7 7.3100 4.6929 -4.7721 19 14 9.5614 4.0142 -6.2370 20 1 9.1479 3.0311 -7.2703 21 1 9.5381 5.3811 -6.8169 22 1 10.9360 3.6966 -5.7735 23 6 9.0960 2.2859 -0.6165 24 6 9.7996 3.4299 -0.2532 25 6 10.6775 3.3892 0.8078 26 6 10.8755 2.2131 1.5167 27 6 10.1915 1.0686 1.1694 28 6 9.2980 1.0967 0.1018 29 7 2.2878 -1.1336 0.0009 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.9248 2.1197 -0.0006 34 1 4.4189 1.3040 0.0132 35 1 4.5623 -2.5242 0.0023 36 1 6.9288 -2.9206 0.1150 37 1 9.1535 -1.9177 0.0423 38 1 7.0584 0.2653 -2.2136 39 1 6.6957 2.7053 -2.9307 40 1 7.6186 3.9829 -2.1035 41 1 7.1322 5.2983 -5.5089 42 1 9.6526 4.3506 -0.7982 43 1 11.2193 4.2804 1.0881 44 1 11.5692 2.1945 2.3443 45 1 10.3476 0.1542 1.7224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103325847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = 143.253876 kcal Electronic energy + Delta-G solvation = -29860.178393 eV Core-core repulsion = 25846.282002 eV Total energy + Delta-G solvation = -4013.896390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.24858 -40.63933 -39.37578 -36.41010 -35.06793 -33.92824 -32.98616 -32.29581 -30.87385 -29.95141 -29.52328 -28.13115 -26.99957 -26.10894 -24.10278 -22.95757 -21.97775 -21.44834 -20.84935 -20.38876 -19.79571 -18.44695 -17.21521 -17.01356 -16.65500 -16.03919 -15.86839 -15.55549 -15.45067 -14.89867 -14.51562 -14.47422 -14.15240 -13.74260 -13.61572 -13.35849 -13.13991 -13.08995 -12.87292 -12.80085 -12.57638 -12.34501 -12.10956 -11.86663 -11.53501 -11.25630 -11.15171 -10.82444 -10.78517 -10.67623 -10.62067 -10.39307 -10.20755 -9.89869 -9.37395 -9.26916 -8.74765 -8.67722 -8.59951 -8.06312 -7.41131 -6.65026 -6.24911 -4.36997 1.13335 1.85482 1.98137 2.28364 2.34231 2.93427 3.18908 3.25583 3.29909 3.42205 3.55805 3.79675 3.88764 4.28168 4.57703 4.58101 4.84810 4.99653 5.05657 5.15225 5.22717 5.24387 5.32716 5.47502 5.53913 5.57231 5.63306 5.79536 5.82279 5.94555 6.05529 6.18696 6.24697 6.37226 6.44526 6.49144 6.60432 6.68089 6.87372 6.96968 7.01297 7.09335 7.12858 7.17704 7.32865 7.44007 7.54808 7.64525 7.86304 7.97912 8.10759 8.16938 8.45021 8.70957 9.30689 10.79011 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.003589 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.929803 B = 7799.540547 C = 9977.537390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.379 5.379 3 C 0.058 3.942 4 C -0.261 4.261 5 C 0.307 3.693 6 N -0.642 5.642 7 C 0.556 3.444 8 O -0.498 6.498 9 C -0.282 4.282 10 C 0.086 3.914 11 C -0.231 4.231 12 C 0.169 3.831 13 N -0.436 5.436 14 C 0.234 3.766 15 C -0.542 4.542 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.097 3.903 24 C -0.102 4.102 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.093 4.093 28 C -0.075 4.075 29 N -0.337 5.337 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.409 0.591 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.154 0.846 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.267 0.733 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -10.556 10.931 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.087 4.087 4 C -0.291 4.291 5 C 0.051 3.949 6 N -0.291 5.291 7 C 0.348 3.652 8 O -0.372 6.372 9 C -0.303 4.303 10 C 0.065 3.935 11 C -0.238 4.238 12 C 0.033 3.967 13 N -0.110 5.110 14 C 0.116 3.884 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.010 4.010 24 C -0.122 4.122 25 C -0.147 4.147 26 C -0.169 4.169 27 C -0.112 4.112 28 C -0.079 4.079 29 N -0.168 5.168 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.245 0.755 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.172 0.828 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.669 -10.213 10.562 16.573 hybrid contribution 0.703 0.266 -0.951 1.212 sum -6.966 -9.947 9.611 15.487 Atomic orbital electron populations 1.21764 0.74301 1.04252 1.02943 1.47966 1.05943 1.03108 1.59343 1.22625 0.90869 0.93439 1.01767 1.21982 0.98002 0.93373 1.15726 1.19203 0.86691 0.90771 0.98201 1.42918 1.03022 1.09353 1.73826 1.17283 0.82312 0.89021 0.76559 1.90927 1.85129 1.14330 1.46812 1.21523 0.92573 0.99594 1.16646 1.21678 0.95646 0.92082 0.84063 1.18553 1.07806 0.93419 1.04030 1.21745 0.94598 0.83395 0.97001 1.44556 1.32042 1.09399 1.25005 1.19747 0.95984 0.86746 0.85957 1.21362 1.09177 1.24100 1.03404 0.91676 1.24938 0.95575 0.94763 0.98420 1.69932 1.25885 1.24272 1.32616 0.86393 0.81178 0.77524 0.81856 1.20337 1.20868 1.19564 1.18198 0.95243 0.95511 0.92013 1.20168 0.97330 0.96603 0.98139 1.20605 0.99716 0.97864 0.96487 1.20690 1.01910 0.93161 1.01117 1.20216 0.96693 0.97790 0.96488 1.18876 0.98696 0.92814 0.97555 1.77257 0.99525 1.07784 1.32238 0.91172 0.89542 0.89630 0.80754 0.80821 0.75528 0.85625 0.85629 0.82832 0.93408 0.93621 0.92287 0.86184 0.86690 0.87039 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.81 11.47 59.85 0.69 1.49 16 2 N -0.38 -4.78 4.01 -68.18 -0.27 -5.05 16 3 C 0.06 0.76 11.48 -17.24 -0.20 0.56 16 4 C -0.26 -4.22 9.60 -39.83 -0.38 -4.60 16 5 C 0.31 4.81 8.11 -154.46 -1.25 3.55 16 6 N -0.64 -8.66 5.44 -13.78 -0.07 -8.73 16 7 C 0.56 8.36 7.15 -15.03 -0.11 8.25 16 8 O -0.50 -9.29 9.47 5.10 0.05 -9.24 16 9 C -0.28 -3.46 9.81 -39.35 -0.39 -3.85 16 10 C 0.09 1.17 10.16 -37.30 -0.38 0.80 16 11 C -0.23 -4.19 4.63 -103.41 -0.48 -4.67 16 12 C 0.17 3.42 8.35 -16.45 -0.14 3.29 16 13 N -0.44 -9.84 2.73 -115.37 -0.31 -10.15 16 14 C 0.23 5.89 5.71 -5.19 -0.03 5.86 16 15 C -0.54 -14.63 9.39 -34.44 -0.32 -14.96 16 16 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.10 2.09 6.79 -83.95 -0.57 1.52 16 24 C -0.10 -2.05 9.97 -39.42 -0.39 -2.44 16 25 C -0.13 -2.15 10.01 -39.56 -0.40 -2.55 16 26 C -0.15 -2.36 10.03 -39.56 -0.40 -2.76 16 27 C -0.09 -1.56 10.09 -39.38 -0.40 -1.96 16 28 C -0.08 -1.46 6.36 -104.93 -0.67 -2.13 16 29 N -0.34 -5.05 12.59 31.43 0.40 -4.66 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.17 3.20 5.90 -52.48 -0.31 2.89 16 35 H 0.41 4.20 8.78 -40.82 -0.36 3.84 16 36 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 2.97 7.89 -52.48 -0.41 2.56 16 39 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 45 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -33.44 388.71 -10.25 -43.69 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.70 Total: 9.47 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -5.91 Total: -12.88 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.47 Total: -52.78 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.05 Total: -9.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.44 -10.25 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103325847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.948 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds