Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36653 * 119.78024 * 2 1 4 4 C 1.39668 * 119.71455 * 180.02562 * 3 2 1 5 5 C 1.46245 * 134.19739 * 180.02562 * 4 3 2 6 6 C 1.35800 * 106.08141 * 179.97438 * 5 4 3 7 7 C 1.46987 * 125.13015 * 179.97438 * 6 5 4 8 8 O 1.21657 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00238 * 179.97438 * 7 6 5 10 10 S 1.65595 * 119.99832 * 180.02562 * 9 7 6 11 11 O 1.42104 * 104.27598 * 181.07885 * 10 9 7 12 12 O 1.42105 * 104.27901 * 308.93072 * 10 9 7 13 13 C 1.81393 * 104.45039 * 65.00321 * 10 9 7 14 14 C 1.53008 * 109.47394 * 179.97438 * 13 10 9 15 15 C 1.50695 * 109.47214 * 180.02562 * 14 13 10 16 16 H 1.08002 * 120.00105 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99788 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00268 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47169 * 89.99515 * 19 17 15 21 21 H 1.48495 * 109.47452 * 210.00034 * 19 17 15 22 22 H 1.48503 * 109.46985 * 329.99717 * 19 17 15 23 23 O 1.34944 * 109.74788 * 0.02562 * 6 5 4 24 24 C 1.34720 * 110.86265 * 359.97438 * 23 6 5 25 25 C 1.38992 * 133.24979 * 180.02562 * 24 23 6 26 26 C 1.37830 * 119.85247 * 180.25681 * 25 24 23 27 27 C 1.50700 * 119.62733 * 179.72389 * 26 25 24 28 28 H 1.09006 * 109.47587 * 89.99706 * 1 2 3 29 29 H 1.09000 * 109.47474 * 209.99661 * 1 2 3 30 30 H 1.08999 * 109.47388 * 329.99971 * 1 2 3 31 31 H 1.08002 * 120.14548 * 0.04509 * 3 2 1 32 32 H 1.07997 * 126.96028 * 359.95979 * 5 4 3 33 33 H 0.96996 * 119.99763 * 0.02562 * 9 7 6 34 34 H 1.08993 * 109.47645 * 300.00203 * 13 10 9 35 35 H 1.09000 * 109.47001 * 60.00287 * 13 10 9 36 36 H 1.09002 * 109.46971 * 300.00773 * 14 13 10 37 37 H 1.09000 * 109.46553 * 60.00330 * 14 13 10 38 38 H 0.97001 * 119.99794 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.07057 * 359.97354 * 25 24 23 40 40 H 1.09003 * 109.47421 * 90.00094 * 27 26 25 41 41 H 1.09004 * 109.46932 * 209.99911 * 27 26 25 42 42 H 1.09001 * 109.47421 * 329.99520 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1856 1.1861 0.0000 4 6 3.5823 1.1845 -0.0005 5 6 4.6030 2.2318 -0.0002 6 6 5.8001 1.5904 -0.0005 7 6 7.1133 2.2506 -0.0009 8 8 7.1835 3.4652 -0.0005 9 7 8.2397 1.5105 -0.0007 10 16 9.7191 2.2543 -0.0005 11 8 10.6507 1.1816 -0.0262 12 8 9.6437 3.1849 -1.0719 13 6 9.7899 3.1209 1.5915 14 6 11.1264 3.8557 1.7133 15 6 11.1854 4.5751 3.0362 16 1 10.3531 4.5140 3.7217 17 6 12.3024 5.3104 3.3718 18 7 12.3541 5.9378 4.5265 19 14 13.7424 5.4154 2.1865 20 1 13.5547 6.5776 1.2814 21 1 15.0032 5.5833 2.9529 22 1 13.8139 4.1686 1.3829 23 8 5.6021 0.2556 -0.0016 24 6 4.2865 -0.0344 -0.0014 25 6 3.5744 -1.2280 -0.0017 26 6 2.1963 -1.2047 -0.0068 27 6 1.4293 -2.5019 -0.0134 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6444 2.1207 0.0007 32 1 4.4383 3.2991 -0.0001 33 1 8.1836 0.5422 -0.0007 34 1 8.9729 3.8400 1.6504 35 1 9.6974 2.3988 2.4027 36 1 11.9432 3.1362 1.6546 37 1 11.2193 4.5778 0.9022 38 1 13.1398 6.4554 4.7625 39 1 4.0998 -2.1716 -0.0026 40 1 1.2405 -2.8177 1.0126 41 1 0.4802 -2.3601 -0.5304 42 1 2.0123 -3.2661 -0.5274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124911413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -87.853106 kcal Electronic energy + Delta-G solvation = -27617.032573 eV Core-core repulsion = 23462.714076 eV Total energy + Delta-G solvation = -4154.318497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.102 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.92560 -40.14259 -39.04868 -36.89329 -35.82676 -34.77019 -33.98828 -33.78142 -32.69872 -31.54818 -31.48475 -27.66131 -27.44377 -26.03347 -24.17096 -22.57358 -21.84486 -21.35969 -20.99466 -19.54538 -18.92359 -17.85886 -17.58944 -17.00643 -16.81009 -16.05376 -15.82262 -15.70014 -15.26052 -15.04002 -14.93929 -14.56823 -14.47827 -14.28945 -13.71007 -13.49442 -13.45513 -13.32046 -12.86155 -12.82331 -12.66100 -12.56527 -11.96969 -11.96683 -11.91939 -11.91755 -11.81520 -11.39414 -11.32652 -11.26351 -11.09001 -10.88843 -10.53540 -10.44777 -10.14451 -9.66760 -9.37555 -8.86329 -8.66070 -8.62584 -6.16178 -4.17769 0.05888 0.28451 0.86714 1.31254 2.01398 2.45802 2.58964 3.15635 3.27557 3.34500 3.37881 3.66698 3.89457 4.14288 4.27296 4.35387 4.35991 4.46228 4.50766 4.62981 4.63785 4.78956 4.96473 5.05556 5.09547 5.14824 5.14939 5.18923 5.31111 5.43058 5.46765 5.49033 5.53582 5.65881 5.77809 5.88169 6.02896 6.11969 6.22981 6.37482 6.65193 6.77840 6.90824 7.10865 7.53022 8.36231 8.84815 9.42699 10.96064 Molecular weight = 351.10amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002141 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.002526 B =13075.807705 C =13536.873451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.106 4.106 3 C -0.053 4.053 4 C -0.148 4.148 5 C -0.094 4.094 6 C -0.035 4.035 7 C 0.625 3.375 8 O -0.462 6.462 9 N -1.050 6.050 10 S 2.563 3.437 11 O -0.947 6.947 12 O -0.934 6.934 13 C -0.568 4.568 14 C -0.005 4.005 15 C -0.519 4.519 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 O -0.182 6.182 24 C 0.076 3.924 25 C -0.112 4.112 26 C -0.045 4.045 27 C -0.117 4.117 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.176 0.824 33 H 0.435 0.565 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.511 -16.998 -9.710 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.106 4.106 3 C -0.071 4.071 4 C -0.149 4.149 5 C -0.114 4.114 6 C -0.087 4.087 7 C 0.411 3.589 8 O -0.334 6.334 9 N -0.810 5.810 10 S 2.663 3.337 11 O -0.938 6.938 12 O -0.924 6.924 13 C -0.703 4.703 14 C -0.045 4.045 15 C -0.558 4.558 16 H 0.097 0.903 17 C -0.131 4.131 18 N -0.532 5.532 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 O -0.084 6.084 24 C 0.028 3.972 25 C -0.130 4.130 26 C -0.046 4.046 27 C -0.174 4.174 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.194 0.806 33 H 0.271 0.729 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.521 -16.264 -10.355 31.193 hybrid contribution 0.516 -0.158 0.100 0.549 sum -24.004 -16.422 -10.255 30.839 Atomic orbital electron populations 1.20810 0.90405 1.03192 1.02571 1.19409 0.96560 0.92012 1.02631 1.20230 0.90962 0.98441 0.97496 1.19869 0.94628 0.92286 1.08138 1.22876 0.89053 1.00519 0.98981 1.21619 0.95251 0.80919 1.10893 1.16488 0.81825 0.85994 0.74597 1.91105 1.85625 1.11115 1.45545 1.55333 1.24462 1.21111 1.80078 1.06850 0.71996 0.75270 0.79585 1.93612 1.58054 1.54007 1.88107 1.93616 1.83780 1.63598 1.51384 1.30191 1.10589 1.12757 1.16720 1.19448 0.88393 0.95982 1.00675 1.20801 1.04288 1.30347 1.00343 0.90290 1.24979 0.98281 0.94647 0.95193 1.69879 1.29841 1.31990 1.21477 0.86917 0.82268 0.79639 0.81573 1.19593 1.20736 1.18637 1.83986 1.24728 1.23206 1.76475 1.19680 0.80682 0.95693 1.01167 1.19798 0.92402 0.94836 1.05969 1.19604 0.91991 0.95562 0.97415 1.20884 1.00088 0.93440 1.02963 0.90989 0.91053 0.91276 0.84887 0.80622 0.72927 0.84373 0.85174 0.94760 0.95008 0.92342 0.84528 0.90448 0.90669 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.15 36.00 0.33 -0.13 16 2 C -0.11 -0.72 5.85 -104.99 -0.61 -1.33 16 3 C -0.05 -0.42 9.68 -39.62 -0.38 -0.81 16 4 C -0.15 -1.51 6.38 -105.19 -0.67 -2.18 16 5 C -0.09 -1.02 10.80 -37.24 -0.40 -1.43 16 6 C -0.04 -0.43 7.07 -36.91 -0.26 -0.69 16 7 C 0.63 8.85 7.53 -12.72 -0.10 8.75 16 8 O -0.46 -7.83 14.92 -11.90 -0.18 -8.01 16 9 N -1.05 -13.90 5.60 30.33 0.17 -13.73 16 10 S 2.56 44.38 5.11 -107.50 -0.55 43.83 16 11 O -0.95 -17.71 18.08 -57.54 -1.04 -18.75 16 12 O -0.93 -19.16 17.04 -64.79 -1.10 -20.26 16 13 C -0.57 -10.75 5.82 37.16 0.22 -10.53 16 14 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 15 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 16 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 19 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 O -0.18 -2.07 10.28 2.77 0.03 -2.05 16 24 C 0.08 0.80 7.41 -38.35 -0.28 0.51 16 25 C -0.11 -0.90 9.70 -39.45 -0.38 -1.29 16 26 C -0.05 -0.31 5.88 -104.56 -0.61 -0.92 16 27 C -0.12 -0.45 9.15 36.01 0.33 -0.12 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.22 6.69 -51.93 -0.35 -0.13 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.43 4.31 8.50 -34.47 -0.29 4.02 16 34 H 0.14 2.57 7.19 -51.93 -0.37 2.20 16 35 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 36 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 37 H 0.03 0.75 7.57 -51.93 -0.39 0.36 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.21 6.68 -51.93 -0.35 -0.13 16 42 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -36.40 371.68 -9.43 -45.83 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.09 Total: 0.38 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.38 Total: -23.36 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.94 Total: -40.10 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.29 Total: -49.07 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 44.38 SS G_CDS: -0.55 Total: 43.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.40 -9.43 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124911413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.025 kcal (2) G-P(sol) polarization free energy of solvation -36.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds