Wall clock time and date at job start Tue Mar 31 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47137 * 300.00028 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99826 * 3 2 1 7 7 C 1.40049 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00044 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99908 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00117 * 180.02562 * 9 7 2 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72354 * 13 12 11 16 16 C 1.47080 * 120.88032 * 0.02562 * 15 13 12 17 17 C 1.53699 * 108.27697 * 128.75295 * 16 15 13 18 18 N 1.46903 * 109.25706 * 54.08274 * 17 16 15 19 19 C 1.39677 * 110.99631 * 172.60900 * 18 17 16 20 20 C 1.38941 * 120.06601 * 304.29458 * 19 18 17 21 21 C 1.38090 * 119.94559 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.09291 * 0.03157 * 21 20 19 23 23 C 1.38390 * 120.13478 * 359.97039 * 22 21 20 24 24 Cl 1.73593 * 119.97880 * 180.02562 * 23 22 21 25 25 C 1.38242 * 120.04838 * 359.74786 * 23 22 21 26 26 C 1.46900 * 111.26543 * 296.75315 * 18 17 16 27 27 C 1.47083 * 120.88425 * 180.27648 * 15 13 12 28 28 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99349 * 0.02562 * 11 9 7 30 30 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 31 31 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 32 32 H 1.09002 * 109.62409 * 248.51905 * 16 15 13 33 33 H 1.09001 * 109.63200 * 9.09754 * 16 15 13 34 34 H 1.09000 * 109.64873 * 294.07401 * 17 16 15 35 35 H 1.08998 * 109.42111 * 173.94305 * 17 16 15 36 36 H 1.07997 * 120.02727 * 0.02562 * 20 19 18 37 37 H 1.08007 * 119.95558 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.93612 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.04597 * 180.27595 * 25 23 22 40 40 H 1.08999 * 109.49361 * 303.14884 * 26 18 17 41 41 H 1.09003 * 109.51306 * 183.08234 * 26 18 17 42 42 H 1.09000 * 109.62176 * 350.90081 * 27 15 13 43 43 H 1.08991 * 109.62935 * 111.47523 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4804 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.1958 -6.0618 -0.0007 14 8 3.3883 -5.8402 -0.0012 15 7 1.7466 -7.3325 0.0052 16 6 0.3049 -7.6234 0.0120 17 6 0.0085 -8.6180 -1.1217 18 7 0.8792 -9.7922 -0.9760 19 6 0.5278 -10.7918 -1.8861 20 6 -0.7725 -11.2804 -1.9157 21 6 -1.1174 -12.2683 -2.8168 22 6 -0.1702 -12.7724 -3.6892 23 6 1.1260 -12.2884 -3.6628 24 17 2.3116 -12.9236 -4.7602 25 6 1.4760 -11.2953 -2.7670 26 6 2.2950 -9.4264 -1.1166 27 6 2.6850 -8.4650 0.0107 28 1 -0.4849 0.8400 0.0004 29 1 2.9190 -3.6476 -0.0002 30 1 0.5895 -4.9743 -0.8897 31 1 0.5902 -4.9740 0.8902 32 1 0.0243 -8.0612 0.9700 33 1 -0.2553 -6.7027 -0.1511 34 1 0.1965 -8.1429 -2.0845 35 1 -1.0345 -8.9297 -1.0670 36 1 -1.5132 -10.8873 -1.2351 37 1 -2.1280 -12.6485 -2.8396 38 1 -0.4426 -13.5453 -4.3926 39 1 2.4865 -10.9145 -2.7495 40 1 2.4512 -8.9400 -2.0794 41 1 2.9105 -10.3241 -1.0585 42 1 3.6992 -8.1008 -0.1533 43 1 2.6292 -8.9822 0.9685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170598905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:55 Heat of formation + Delta-G solvation = -30.899271 kcal Electronic energy + Delta-G solvation = -27661.862752 eV Core-core repulsion = 23540.263003 eV Total energy + Delta-G solvation = -4121.599749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98865 -39.73022 -37.99010 -37.03419 -36.69627 -34.86542 -33.21053 -32.32250 -31.99582 -30.88944 -30.40672 -28.09614 -26.82352 -25.51652 -24.45294 -22.88873 -22.21876 -21.30229 -19.79436 -19.11206 -18.35636 -17.57642 -16.60374 -16.36376 -16.06877 -15.82648 -15.62448 -15.32390 -15.23010 -14.96283 -14.60423 -14.35833 -14.25096 -13.98624 -13.85195 -13.54940 -13.08934 -12.75361 -12.57207 -12.31442 -12.26758 -12.01691 -11.92528 -11.73560 -11.67851 -11.47427 -11.44126 -11.23036 -11.13653 -10.95572 -10.47076 -10.23489 -10.20769 -9.68254 -9.25878 -8.87739 -8.84267 -8.32257 -7.69062 -7.60520 -6.21429 -4.65241 0.74274 0.83377 1.72199 2.68089 2.74744 3.08320 3.13545 3.22041 3.27443 3.36603 4.10466 4.27962 4.35621 4.47663 4.55595 4.56392 4.66349 4.69389 4.76499 4.87313 4.92407 4.96226 5.01135 5.05927 5.16667 5.26780 5.30449 5.45507 5.54185 5.65113 5.67404 5.70151 5.79143 5.91418 5.93436 6.06899 6.10119 6.29660 6.47207 6.72257 7.22586 7.43575 7.93291 7.99518 8.19845 8.32908 9.01426 9.49572 10.56065 10.73991 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.001834 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.793774 B =15261.229990 C =15491.869761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.584 6.584 11 N -0.757 5.757 12 C 0.117 3.883 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.621 5.621 16 C 0.109 3.891 17 C 0.042 3.958 18 N -0.486 5.486 19 C 0.129 3.871 20 C -0.136 4.136 21 C -0.081 4.081 22 C -0.140 4.140 23 C -0.007 4.007 24 Cl -0.071 7.071 25 C -0.165 4.165 26 C 0.034 3.966 27 C 0.117 3.883 28 H 0.268 0.732 29 H 0.393 0.607 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -27.158 -5.007 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.360 3.640 10 O -0.467 6.467 11 N -0.416 5.416 12 C -0.011 4.011 13 C 0.304 3.696 14 O -0.410 6.410 15 N -0.357 5.357 16 C -0.015 4.015 17 C -0.084 4.084 18 N -0.200 5.200 19 C 0.030 3.970 20 C -0.157 4.157 21 C -0.100 4.100 22 C -0.160 4.160 23 C -0.034 4.034 24 Cl -0.043 7.043 25 C -0.187 4.187 26 C -0.093 4.093 27 C -0.006 4.006 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.300 -27.060 -4.573 27.474 hybrid contribution 1.038 0.732 -0.789 1.495 sum -0.262 -26.328 -5.362 26.870 Atomic orbital electron populations 1.70032 1.07051 1.27207 1.35403 1.25719 0.94659 1.00349 0.92566 0.86287 0.80590 0.81545 0.78189 1.18683 1.20150 1.20139 1.20899 0.93795 0.89072 1.53941 0.91172 1.18252 0.87167 0.82179 0.76363 1.90587 1.14014 1.86802 1.55288 1.46047 1.09661 1.03184 1.82756 1.20675 0.93514 0.84219 1.02698 1.21167 0.90114 0.83699 0.74612 1.90654 1.17073 1.83897 1.49340 1.48163 1.07035 1.05542 1.74927 1.22025 0.81056 0.99516 0.98878 1.22804 0.97429 0.89212 0.98936 1.59052 1.04985 1.09396 1.46597 1.18852 0.93599 0.94739 0.89804 1.20934 0.95205 0.98876 1.00662 1.20990 0.99324 0.95516 0.94172 1.20995 0.91416 1.02110 1.01481 1.20758 0.90744 0.97459 0.94425 1.98382 1.57490 1.85934 1.62450 1.21214 1.01330 0.99954 0.96197 1.22753 0.87680 0.99745 0.99124 1.21647 0.94857 0.85904 0.98216 0.92148 0.77261 0.90407 0.90234 0.89949 0.87867 0.92643 0.88421 0.84874 0.84776 0.85070 0.84438 0.92702 0.88669 0.88052 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.87 11.83 55.55 0.66 -22.21 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -15.47 9.54 -35.63 -0.34 -15.81 16 8 H 0.07 1.88 7.85 -52.49 -0.41 1.47 16 9 C 0.56 15.90 7.75 -12.99 -0.10 15.80 16 10 O -0.58 -18.48 15.02 5.20 0.08 -18.40 16 11 N -0.76 -17.70 5.52 -62.91 -0.35 -18.05 16 12 C 0.12 2.18 4.52 -5.20 -0.02 2.16 16 13 C 0.51 8.37 7.78 -10.98 -0.09 8.28 16 14 O -0.53 -10.23 15.12 5.55 0.08 -10.14 16 15 N -0.62 -7.51 3.00 -172.20 -0.52 -8.02 16 16 C 0.11 1.02 6.53 -3.36 -0.02 0.99 16 17 C 0.04 0.34 5.44 -3.46 -0.02 0.32 16 18 N -0.49 -4.12 4.67 -170.56 -0.80 -4.91 16 19 C 0.13 1.08 5.64 -83.79 -0.47 0.61 16 20 C -0.14 -0.98 9.14 -39.38 -0.36 -1.34 16 21 C -0.08 -0.52 10.04 -39.62 -0.40 -0.92 16 22 C -0.14 -1.01 9.83 -39.51 -0.39 -1.40 16 23 C -0.01 -0.06 6.32 -39.52 -0.25 -0.31 16 24 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.10 16 25 C -0.17 -1.42 8.61 -39.34 -0.34 -1.76 16 26 C 0.03 0.30 4.30 -3.72 -0.02 0.28 16 27 C 0.12 1.19 6.59 -3.62 -0.02 1.17 16 28 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 29 H 0.39 8.89 7.42 -40.82 -0.30 8.59 16 30 H 0.08 1.42 7.67 -51.93 -0.40 1.02 16 31 H 0.08 1.45 7.99 -51.93 -0.41 1.04 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.99 6.02 -51.93 -0.31 0.67 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.61 6.66 -51.93 -0.35 0.27 16 36 H 0.13 0.77 7.15 -52.49 -0.38 0.39 16 37 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 1.10 5.81 -52.49 -0.30 0.80 16 40 H 0.05 0.52 7.81 -51.93 -0.41 0.11 16 41 H 0.10 0.69 6.90 -51.93 -0.36 0.33 16 42 H 0.10 1.15 7.06 -51.93 -0.37 0.78 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -35.77 369.68 -9.97 -45.74 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.24 Total: 6.87 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -2.93 Total: 10.41 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -1.00 Total: -53.20 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: 0.16 Total: -28.55 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.77 -9.97 -45.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170598905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.844 kcal (2) G-P(sol) polarization free energy of solvation -35.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds