Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48506 * 109.47186 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47137 * 300.00028 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99826 * 3 2 1 7 7 C 1.40049 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99714 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00044 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99908 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00117 * 180.02562 * 9 7 2 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72354 * 13 12 11 16 16 C 1.47080 * 120.88032 * 0.02562 * 15 13 12 17 17 C 1.53699 * 108.27697 * 128.75295 * 16 15 13 18 18 N 1.46903 * 109.25706 * 54.08274 * 17 16 15 19 19 C 1.39677 * 110.99631 * 172.60900 * 18 17 16 20 20 C 1.38941 * 120.06601 * 304.29458 * 19 18 17 21 21 C 1.38090 * 119.94559 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.09291 * 0.03157 * 21 20 19 23 23 C 1.38390 * 120.13478 * 359.97039 * 22 21 20 24 24 Cl 1.73593 * 119.97880 * 180.02562 * 23 22 21 25 25 C 1.38242 * 120.04838 * 359.74786 * 23 22 21 26 26 C 1.46900 * 111.26543 * 296.75315 * 18 17 16 27 27 C 1.47083 * 120.88425 * 180.27648 * 15 13 12 28 28 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99349 * 0.02562 * 11 9 7 30 30 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 31 31 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 32 32 H 1.09002 * 109.62409 * 248.51905 * 16 15 13 33 33 H 1.09001 * 109.63200 * 9.09754 * 16 15 13 34 34 H 1.09000 * 109.64873 * 294.07401 * 17 16 15 35 35 H 1.08998 * 109.42111 * 173.94305 * 17 16 15 36 36 H 1.07997 * 120.02727 * 0.02562 * 20 19 18 37 37 H 1.08007 * 119.95558 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.93612 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.04597 * 180.27595 * 25 23 22 40 40 H 1.08999 * 109.49361 * 303.14884 * 26 18 17 41 41 H 1.09003 * 109.51306 * 183.08234 * 26 18 17 42 42 H 1.09000 * 109.62176 * 350.90081 * 27 15 13 43 43 H 1.08991 * 109.62935 * 111.47523 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4804 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.1958 -6.0618 -0.0007 14 8 3.3883 -5.8402 -0.0012 15 7 1.7466 -7.3325 0.0052 16 6 0.3049 -7.6234 0.0120 17 6 0.0085 -8.6180 -1.1217 18 7 0.8792 -9.7922 -0.9760 19 6 0.5278 -10.7918 -1.8861 20 6 -0.7725 -11.2804 -1.9157 21 6 -1.1174 -12.2683 -2.8168 22 6 -0.1702 -12.7724 -3.6892 23 6 1.1260 -12.2884 -3.6628 24 17 2.3116 -12.9236 -4.7602 25 6 1.4760 -11.2953 -2.7670 26 6 2.2950 -9.4264 -1.1166 27 6 2.6850 -8.4650 0.0107 28 1 -0.4849 0.8400 0.0004 29 1 2.9190 -3.6476 -0.0002 30 1 0.5895 -4.9743 -0.8897 31 1 0.5902 -4.9740 0.8902 32 1 0.0243 -8.0612 0.9700 33 1 -0.2553 -6.7027 -0.1511 34 1 0.1965 -8.1429 -2.0845 35 1 -1.0345 -8.9297 -1.0670 36 1 -1.5132 -10.8873 -1.2351 37 1 -2.1280 -12.6485 -2.8396 38 1 -0.4426 -13.5453 -4.3926 39 1 2.4865 -10.9145 -2.7495 40 1 2.4512 -8.9400 -2.0794 41 1 2.9105 -10.3241 -1.0585 42 1 3.6992 -8.1008 -0.1533 43 1 2.6292 -8.9822 0.9685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170598905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = -56.201974 kcal Electronic energy + Delta-G solvation = -27662.959960 eV Core-core repulsion = 23540.263003 eV Total energy + Delta-G solvation = -4122.696956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81019 -40.77312 -39.26931 -38.59662 -37.40204 -35.78009 -35.12523 -34.35190 -32.84844 -31.60124 -31.13002 -29.66420 -28.07963 -27.01893 -25.32513 -23.65671 -22.88040 -22.26550 -21.58769 -20.32096 -19.55688 -18.78353 -17.89626 -17.49545 -17.11491 -17.01897 -16.80329 -16.56561 -16.11047 -15.84092 -15.74218 -15.63788 -15.34592 -15.13939 -14.75921 -14.62466 -14.46573 -14.03985 -13.98196 -13.37559 -13.29208 -13.09742 -12.88053 -12.83379 -12.74017 -12.64145 -12.56634 -12.47279 -12.41272 -12.11575 -11.98991 -11.83750 -11.02983 -10.95151 -10.87033 -9.94404 -9.89457 -9.80194 -9.58863 -8.95351 -8.32210 -6.87779 0.17125 0.26710 1.12002 1.37605 1.40255 1.40665 1.58228 1.69530 2.25461 2.43703 2.44381 2.74857 3.07158 3.35111 3.57483 3.68087 3.77434 3.78990 3.95578 4.10232 4.13212 4.20234 4.22385 4.34953 4.38483 4.40640 4.42987 4.53364 4.61255 4.66786 4.74965 4.77478 4.91988 5.07364 5.24444 5.31204 5.32126 5.40568 5.56684 5.82045 5.84329 5.97060 6.11271 6.20125 6.24478 6.84984 6.92096 7.43893 8.42302 8.63329 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.020526 B = 0.001834 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.793774 B =15261.229990 C =15491.869761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.031 3.969 3 Si 0.998 3.002 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.542 3.458 10 O -0.624 6.624 11 N -0.752 5.752 12 C 0.117 3.883 13 C 0.521 3.479 14 O -0.568 6.568 15 N -0.609 5.609 16 C 0.104 3.896 17 C 0.046 3.954 18 N -0.484 5.484 19 C 0.115 3.885 20 C -0.137 4.137 21 C -0.078 4.078 22 C -0.144 4.144 23 C -0.021 4.021 24 Cl -0.078 7.078 25 C -0.177 4.177 26 C 0.042 3.958 27 C 0.117 3.883 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -28.049 -4.893 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.609 4.609 8 H 0.099 0.901 9 C 0.347 3.653 10 O -0.511 6.511 11 N -0.409 5.409 12 C -0.011 4.011 13 C 0.309 3.691 14 O -0.448 6.448 15 N -0.343 5.343 16 C -0.019 4.019 17 C -0.080 4.080 18 N -0.199 5.199 19 C 0.017 3.983 20 C -0.158 4.158 21 C -0.097 4.097 22 C -0.163 4.163 23 C -0.049 4.049 24 Cl -0.049 7.049 25 C -0.198 4.198 26 C -0.086 4.086 27 C -0.005 4.005 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.141 0.859 36 H 0.168 0.832 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.061 0.939 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.608 -28.043 -4.464 28.441 hybrid contribution 1.062 0.841 -0.843 1.595 sum -0.546 -27.202 -5.306 27.720 Atomic orbital electron populations 1.70160 1.09270 1.29045 1.36057 1.26925 0.95623 1.04729 0.91189 0.84971 0.79149 0.75421 0.78761 1.17553 1.19056 1.19014 1.21403 0.94615 0.90118 1.54755 0.90060 1.18519 0.86869 0.83757 0.76179 1.90539 1.15530 1.87768 1.57286 1.45749 1.09839 1.03902 1.81451 1.20780 0.93840 0.83357 1.03092 1.20645 0.88934 0.84515 0.74995 1.90638 1.18016 1.84567 1.51541 1.48168 1.08787 1.04531 1.72802 1.22265 0.79071 0.99987 1.00537 1.22799 0.98794 0.88834 0.97531 1.59100 1.04585 1.09359 1.46829 1.18959 0.94276 0.94962 0.90130 1.21204 0.94921 0.98763 1.00868 1.21331 1.00372 0.94801 0.93178 1.21275 0.91040 1.02213 1.01781 1.20916 0.91276 0.97970 0.94689 1.98376 1.57864 1.86002 1.62642 1.21278 1.01514 1.00361 0.96684 1.22665 0.88465 0.99744 0.97688 1.21786 0.93789 0.85265 0.99709 0.91345 0.76896 0.90057 0.89788 0.87980 0.88233 0.93954 0.85948 0.83192 0.82035 0.83700 0.84628 0.93850 0.87130 0.89338 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.38 11.83 21.84 0.26 -49.12 16 2 C 0.03 1.73 5.50 85.30 0.47 2.20 16 3 Si 1.00 41.40 29.56 68.60 2.03 43.42 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.57 -33.27 9.54 24.83 0.24 -33.03 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 9 C 0.54 31.85 7.75 86.36 0.67 32.52 16 10 O -0.62 -40.78 15.02 -4.30 -0.06 -40.84 16 11 N -0.75 -36.02 5.52 -471.17 -2.60 -38.62 16 12 C 0.12 4.43 4.52 85.64 0.39 4.82 16 13 C 0.52 17.02 7.78 87.66 0.68 17.70 16 14 O -0.57 -22.13 15.12 -3.04 -0.05 -22.17 16 15 N -0.61 -14.31 3.00 -817.11 -2.45 -16.76 16 16 C 0.10 1.79 6.53 86.50 0.56 2.35 16 17 C 0.05 0.67 5.44 86.54 0.47 1.14 16 18 N -0.48 -7.33 4.67 -693.52 -3.24 -10.57 16 19 C 0.11 1.73 5.64 38.21 0.22 1.94 16 20 C -0.14 -1.61 9.14 22.40 0.20 -1.40 16 21 C -0.08 -0.78 10.04 22.25 0.22 -0.56 16 22 C -0.14 -1.79 9.83 22.32 0.22 -1.57 16 23 C -0.02 -0.34 6.32 22.31 0.14 -0.20 16 24 Cl -0.08 -1.25 28.95 -2.72 -0.08 -1.33 16 25 C -0.18 -2.87 8.61 22.42 0.19 -2.68 16 26 C 0.04 0.68 4.30 86.37 0.37 1.05 16 27 C 0.12 2.27 6.59 86.34 0.57 2.84 16 28 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 29 H 0.40 18.37 7.42 -92.71 -0.69 17.68 16 30 H 0.08 3.02 7.67 -2.38 -0.02 3.00 16 31 H 0.08 3.11 7.99 -2.39 -0.02 3.09 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 1.82 6.02 -2.39 -0.01 1.81 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.12 1.20 6.66 -2.39 -0.02 1.18 16 36 H 0.15 1.20 7.15 -2.91 -0.02 1.18 16 37 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 38 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.14 2.13 5.81 -2.91 -0.02 2.12 16 40 H 0.04 0.81 7.81 -2.39 -0.02 0.79 16 41 H 0.11 1.46 6.90 -2.39 -0.02 1.45 16 42 H 0.09 2.00 7.06 -2.39 -0.02 1.99 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -78.94 369.68 -0.20 -79.15 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.38 Total: 29.72 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 5.62 Total: 27.14 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -8.04 Total: -115.08 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.11 Total: -63.02 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -78.94 -0.20 -79.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170598905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.943 kcal (2) G-P(sol) polarization free energy of solvation -78.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds