Wall clock time and date at job start Tue Mar 31 2020 06:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99762 * 2 1 4 4 C 1.38978 * 120.22796 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.01912 * 180.22021 * 4 3 2 6 6 C 1.38197 * 120.34444 * 359.32499 * 5 4 3 7 7 C 1.39015 * 119.81589 * 359.92551 * 6 5 4 8 8 C 1.38308 * 120.22580 * 179.97438 * 3 2 1 9 9 C 1.51870 * 120.17358 * 1.29108 * 8 3 2 10 10 C 1.52544 * 109.17175 * 248.07543 * 9 8 3 11 11 C 1.52215 * 111.20797 * 274.50873 * 10 9 8 12 12 C 1.51058 * 113.62555 * 69.77832 * 11 10 9 13 13 N 1.39806 * 120.12370 * 182.32256 * 7 6 5 14 14 C 1.34784 * 121.02207 * 290.85122 * 13 7 6 15 15 O 1.21551 * 119.99879 * 174.39884 * 14 13 7 16 16 C 1.47855 * 119.99981 * 354.39605 * 14 13 7 17 17 C 1.39935 * 120.02652 * 331.28296 * 16 14 13 18 18 C 1.38322 * 120.35940 * 179.75891 * 17 16 14 19 19 C 1.37754 * 120.40979 * 0.51853 * 18 17 16 20 20 C 1.40753 * 120.04491 * 359.73589 * 19 18 17 21 21 C 1.41433 * 120.17957 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00404 * 330.99813 * 21 20 19 23 23 C 1.39936 * 120.00231 * 150.99842 * 21 20 19 24 24 N 1.30832 * 119.99766 * 348.99414 * 23 21 20 25 25 Si 1.86796 * 120.00284 * 168.99551 * 23 21 20 26 26 H 1.48504 * 109.47247 * 60.00290 * 25 23 21 27 27 H 1.48503 * 109.47181 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47257 * 299.99669 * 25 23 21 29 29 C 1.39008 * 120.02627 * 151.55308 * 16 14 13 30 30 H 1.09005 * 109.47211 * 299.99590 * 1 2 3 31 31 H 1.08997 * 109.47279 * 59.99417 * 1 2 3 32 32 H 1.08995 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.99157 * 0.22946 * 4 3 2 34 34 H 1.08004 * 119.82442 * 179.30628 * 5 4 3 35 35 H 1.08002 * 120.08946 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.52467 * 7.98466 * 9 8 3 37 37 H 1.08996 * 109.51976 * 128.11253 * 9 8 3 38 38 H 1.09008 * 109.13034 * 34.95424 * 10 9 8 39 39 H 1.08996 * 109.13461 * 154.06033 * 10 9 8 40 40 H 1.09008 * 108.65224 * 190.84640 * 11 10 9 41 41 H 1.08999 * 108.65163 * 308.84347 * 11 10 9 42 42 H 1.08998 * 109.32558 * 56.14622 * 12 11 10 43 43 H 1.08995 * 109.32196 * 175.61053 * 12 11 10 44 44 H 1.08005 * 119.82215 * 0.02562 * 17 16 14 45 45 H 1.07997 * 119.79770 * 180.22914 * 18 17 16 46 46 H 1.07999 * 119.98287 * 179.76480 * 19 18 17 47 47 H 0.96998 * 120.00076 * 180.02562 * 24 23 21 48 48 H 1.07998 * 120.20677 * 359.95837 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2936 2.3795 -0.0005 5 6 1.9253 3.6084 -0.0051 6 6 3.3052 3.6841 0.0048 7 6 4.0613 2.5177 0.0211 8 6 3.4268 1.2888 0.0005 9 6 4.2628 0.0213 -0.0285 10 6 4.9889 -0.1305 1.3045 11 6 6.2996 0.6435 1.3089 12 6 6.1171 2.1429 1.3193 13 7 5.4564 2.5867 0.0803 14 6 6.1741 3.0457 -0.9642 15 8 7.3758 3.1938 -0.8576 16 6 5.4996 3.3689 -2.2396 17 6 4.3306 2.6919 -2.6047 18 6 3.6913 2.9923 -3.7940 19 6 4.2033 3.9535 -4.6375 20 6 5.3811 4.6412 -4.2897 21 6 5.9090 5.6290 -5.1535 22 1 5.7434 5.5595 -6.2185 23 6 6.6460 6.6963 -4.6282 24 7 6.6674 6.9035 -3.3366 25 14 7.5990 7.8253 -5.7711 26 1 6.6610 8.4716 -6.7239 27 1 8.2900 8.8694 -4.9726 28 1 8.6032 7.0330 -6.5255 29 6 6.0293 4.3416 -3.0796 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2148 2.3270 0.0028 34 1 1.3376 4.5144 -0.0169 35 1 3.7947 4.6468 0.0008 36 1 3.6139 -0.8395 -0.1898 37 1 4.9920 0.0843 -0.8362 38 1 4.3499 0.2444 2.1041 39 1 5.1967 -1.1860 1.4800 40 1 6.8714 0.3557 2.1912 41 1 6.8691 0.3697 0.4207 42 1 5.5054 2.4259 2.1758 43 1 7.0917 2.6243 1.4006 44 1 3.9230 1.9338 -1.9524 45 1 2.7876 2.4668 -4.0650 46 1 3.7005 4.1798 -5.5662 47 1 7.1779 7.6435 -2.9725 48 1 6.9334 4.8641 -2.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178890024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:07 Heat of formation + Delta-G solvation = -19.862796 kcal Electronic energy + Delta-G solvation = -32075.294283 eV Core-core repulsion = 28060.146305 eV Total energy + Delta-G solvation = -4015.147978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.162 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.00845 -39.37992 -37.60173 -37.06228 -35.88006 -33.93722 -33.54850 -31.88412 -30.05774 -29.41313 -29.32879 -27.71317 -26.96402 -25.33090 -24.66873 -23.11559 -22.02778 -21.04881 -20.89213 -20.29849 -19.20193 -18.02982 -17.00334 -16.74615 -15.99891 -15.85664 -15.75966 -15.53635 -15.12891 -14.78024 -14.69357 -14.15044 -13.88476 -13.76385 -13.50723 -13.42839 -13.08192 -12.81786 -12.62589 -12.58237 -12.45966 -12.21888 -11.80696 -11.63679 -11.50287 -11.39253 -11.11611 -11.05659 -11.03916 -10.89283 -10.61351 -10.56588 -10.46942 -10.41548 -10.05001 -9.67654 -9.24700 -9.21916 -8.81313 -8.12730 -8.01041 -7.53881 -7.37639 -6.71118 -4.38528 1.37458 1.60201 2.24943 2.86995 3.08416 3.09661 3.11967 3.19195 3.45537 3.69939 3.88198 3.96215 4.66785 4.72601 4.82880 4.88786 5.01029 5.05386 5.10438 5.19847 5.22012 5.32206 5.38421 5.46807 5.56829 5.61480 5.65922 5.72342 5.78984 5.93061 6.00647 6.07499 6.11576 6.18080 6.25234 6.34243 6.43476 6.46411 6.53050 6.62276 6.71758 6.78936 6.95720 7.03606 7.08030 7.26446 7.42330 7.43064 7.71982 7.82054 7.92999 8.03549 8.21441 8.54293 8.75514 8.86691 8.88770 10.23957 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003677 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.597968 B = 7613.769526 C = 8731.662636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.134 3.866 4 C -0.210 4.210 5 C -0.069 4.069 6 C -0.138 4.138 7 C 0.204 3.796 8 C -0.126 4.126 9 C -0.070 4.070 10 C -0.109 4.109 11 C -0.139 4.139 12 C 0.118 3.882 13 N -0.574 5.574 14 C 0.578 3.422 15 O -0.535 6.535 16 C -0.132 4.132 17 C -0.205 4.205 18 C -0.103 4.103 19 C -0.202 4.202 20 C 0.098 3.902 21 C -0.464 4.464 22 H 0.078 0.922 23 C 0.073 3.927 24 N -0.801 5.801 25 Si 0.912 3.088 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.264 1.264 29 C -0.086 4.086 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.282 0.718 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 -10.130 10.605 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.089 3.911 4 C -0.229 4.229 5 C -0.088 4.088 6 C -0.158 4.158 7 C 0.113 3.887 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.147 4.147 11 C -0.177 4.177 12 C -0.004 4.004 13 N -0.304 5.304 14 C 0.372 3.628 15 O -0.412 6.412 16 C -0.135 4.135 17 C -0.224 4.224 18 C -0.121 4.121 19 C -0.222 4.222 20 C 0.096 3.904 21 C -0.494 4.494 22 H 0.096 0.904 23 C -0.144 4.144 24 N -0.427 5.427 25 Si 0.736 3.264 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.189 1.189 29 C -0.107 4.107 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.126 0.874 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.964 -10.057 10.840 17.292 hybrid contribution -0.040 0.836 -0.546 0.999 sum -9.004 -9.221 10.295 16.495 Atomic orbital electron populations 1.23011 0.78753 1.03556 1.01318 1.86030 1.20941 1.26810 1.89022 1.18374 0.91047 0.84115 0.97599 1.21172 0.99660 0.92195 1.09906 1.20719 0.93930 0.97018 0.97113 1.21287 0.93807 0.98063 1.02658 1.16833 0.83001 0.91679 0.97227 1.19230 0.90695 0.95366 1.07526 1.20548 0.97823 0.94424 0.97954 1.21237 0.96158 0.99863 0.97418 1.21493 0.97973 0.95391 1.02855 1.21229 0.99244 0.94476 0.85417 1.45559 1.03862 1.65442 1.15574 1.18997 0.86247 0.74253 0.83349 1.90690 1.14664 1.52532 1.83318 1.19388 0.97947 1.02026 0.94110 1.20971 0.97822 1.04474 0.99152 1.20418 0.98501 0.98277 0.94933 1.21174 0.97889 1.02438 1.00648 1.17543 0.89783 0.91130 0.91944 1.19502 1.29203 1.05749 0.94984 0.90368 1.25883 0.94905 0.98116 0.95450 1.69743 1.33054 1.27211 1.12651 0.86308 0.80118 0.79376 0.80552 1.19089 1.20332 1.18857 1.21586 0.99504 0.95160 0.94408 0.92865 0.92640 0.88561 0.85677 0.85618 0.85475 0.90451 0.90870 0.92022 0.91682 0.91047 0.91519 0.91025 0.88989 0.87409 0.89206 0.88735 0.90736 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.23 16 2 O -0.31 -3.84 9.33 -19.43 -0.18 -4.03 16 3 C 0.13 1.85 6.66 -39.28 -0.26 1.59 16 4 C -0.21 -2.68 9.05 -39.33 -0.36 -3.04 16 5 C -0.07 -0.96 10.02 -39.62 -0.40 -1.36 16 6 C -0.14 -2.28 8.55 -39.31 -0.34 -2.62 16 7 C 0.20 3.41 2.71 -83.90 -0.23 3.18 16 8 C -0.13 -1.90 3.29 -103.99 -0.34 -2.24 16 9 C -0.07 -0.97 5.39 -27.54 -0.15 -1.12 16 10 C -0.11 -1.28 5.61 -27.36 -0.15 -1.44 16 11 C -0.14 -1.74 5.51 -28.11 -0.15 -1.89 16 12 C 0.12 1.72 5.78 -4.60 -0.03 1.70 16 13 N -0.57 -10.34 2.29 -115.16 -0.26 -10.60 16 14 C 0.58 12.96 7.39 -12.32 -0.09 12.87 16 15 O -0.54 -13.33 16.25 5.32 0.09 -13.24 16 16 C -0.13 -3.17 5.30 -105.04 -0.56 -3.72 16 17 C -0.20 -4.51 7.79 -38.92 -0.30 -4.82 16 18 C -0.10 -2.28 10.01 -39.73 -0.40 -2.68 16 19 C -0.20 -4.87 9.78 -38.81 -0.38 -5.25 16 20 C 0.10 2.62 5.54 -106.87 -0.59 2.03 16 21 C -0.46 -12.35 9.06 -37.73 -0.34 -12.69 16 22 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 23 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 24 N -0.80 -21.20 10.87 55.55 0.60 -20.59 16 25 Si 0.91 19.10 29.57 -169.99 -5.03 14.07 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 29 C -0.09 -2.32 8.20 -38.44 -0.32 -2.63 16 30 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 31 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.13 1.25 6.33 -52.48 -0.33 0.91 16 34 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 35 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.08 1.01 7.09 -51.93 -0.37 0.64 16 37 H 0.07 1.16 7.82 -51.93 -0.41 0.75 16 38 H 0.06 0.71 7.87 -51.92 -0.41 0.30 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.07 0.96 7.96 -51.93 -0.41 0.54 16 42 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 43 H 0.09 1.43 7.28 -51.93 -0.38 1.05 16 44 H 0.11 2.19 4.08 -52.48 -0.21 1.97 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 46 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 47 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 48 H 0.13 3.78 6.08 -52.49 -0.32 3.47 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -30.32 381.09 -10.08 -40.40 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.56 Total: 9.37 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -4.48 Total: -21.12 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.34 Total: -31.19 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.09 Total: -17.27 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.32 -10.08 -40.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178890024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.536 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds