Wall clock time and date at job start Tue Mar 31 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99762 * 2 1 4 4 C 1.38978 * 120.22796 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.01912 * 180.22021 * 4 3 2 6 6 C 1.38197 * 120.34444 * 359.32499 * 5 4 3 7 7 C 1.39015 * 119.81589 * 359.92551 * 6 5 4 8 8 C 1.38308 * 120.22580 * 179.97438 * 3 2 1 9 9 C 1.51870 * 120.17358 * 1.29108 * 8 3 2 10 10 C 1.52544 * 109.17175 * 248.07543 * 9 8 3 11 11 C 1.52215 * 111.20797 * 274.50873 * 10 9 8 12 12 C 1.51058 * 113.62555 * 69.77832 * 11 10 9 13 13 N 1.39806 * 120.12370 * 182.32256 * 7 6 5 14 14 C 1.34784 * 121.02207 * 290.85122 * 13 7 6 15 15 O 1.21551 * 119.99879 * 174.39884 * 14 13 7 16 16 C 1.47855 * 119.99981 * 354.39605 * 14 13 7 17 17 C 1.39935 * 120.02652 * 331.28296 * 16 14 13 18 18 C 1.38322 * 120.35940 * 179.75891 * 17 16 14 19 19 C 1.37754 * 120.40979 * 0.51853 * 18 17 16 20 20 C 1.40753 * 120.04491 * 359.73589 * 19 18 17 21 21 C 1.41433 * 120.17957 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00404 * 330.99813 * 21 20 19 23 23 C 1.39936 * 120.00231 * 150.99842 * 21 20 19 24 24 N 1.30832 * 119.99766 * 348.99414 * 23 21 20 25 25 Si 1.86796 * 120.00284 * 168.99551 * 23 21 20 26 26 H 1.48504 * 109.47247 * 60.00290 * 25 23 21 27 27 H 1.48503 * 109.47181 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47257 * 299.99669 * 25 23 21 29 29 C 1.39008 * 120.02627 * 151.55308 * 16 14 13 30 30 H 1.09005 * 109.47211 * 299.99590 * 1 2 3 31 31 H 1.08997 * 109.47279 * 59.99417 * 1 2 3 32 32 H 1.08995 * 109.47005 * 179.97438 * 1 2 3 33 33 H 1.08003 * 119.99157 * 0.22946 * 4 3 2 34 34 H 1.08004 * 119.82442 * 179.30628 * 5 4 3 35 35 H 1.08002 * 120.08946 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.52467 * 7.98466 * 9 8 3 37 37 H 1.08996 * 109.51976 * 128.11253 * 9 8 3 38 38 H 1.09008 * 109.13034 * 34.95424 * 10 9 8 39 39 H 1.08996 * 109.13461 * 154.06033 * 10 9 8 40 40 H 1.09008 * 108.65224 * 190.84640 * 11 10 9 41 41 H 1.08999 * 108.65163 * 308.84347 * 11 10 9 42 42 H 1.08998 * 109.32558 * 56.14622 * 12 11 10 43 43 H 1.08995 * 109.32196 * 175.61053 * 12 11 10 44 44 H 1.08005 * 119.82215 * 0.02562 * 17 16 14 45 45 H 1.07997 * 119.79770 * 180.22914 * 18 17 16 46 46 H 1.07999 * 119.98287 * 179.76480 * 19 18 17 47 47 H 0.96998 * 120.00076 * 180.02562 * 24 23 21 48 48 H 1.07998 * 120.20677 * 359.95837 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2936 2.3795 -0.0005 5 6 1.9253 3.6084 -0.0051 6 6 3.3052 3.6841 0.0048 7 6 4.0613 2.5177 0.0211 8 6 3.4268 1.2888 0.0005 9 6 4.2628 0.0213 -0.0285 10 6 4.9889 -0.1305 1.3045 11 6 6.2996 0.6435 1.3089 12 6 6.1171 2.1429 1.3193 13 7 5.4564 2.5867 0.0803 14 6 6.1741 3.0457 -0.9642 15 8 7.3758 3.1938 -0.8576 16 6 5.4996 3.3689 -2.2396 17 6 4.3306 2.6919 -2.6047 18 6 3.6913 2.9923 -3.7940 19 6 4.2033 3.9535 -4.6375 20 6 5.3811 4.6412 -4.2897 21 6 5.9090 5.6290 -5.1535 22 1 5.7434 5.5595 -6.2185 23 6 6.6460 6.6963 -4.6282 24 7 6.6674 6.9035 -3.3366 25 14 7.5990 7.8253 -5.7711 26 1 6.6610 8.4716 -6.7239 27 1 8.2900 8.8694 -4.9726 28 1 8.6032 7.0330 -6.5255 29 6 6.0293 4.3416 -3.0796 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2148 2.3270 0.0028 34 1 1.3376 4.5144 -0.0169 35 1 3.7947 4.6468 0.0008 36 1 3.6139 -0.8395 -0.1898 37 1 4.9920 0.0843 -0.8362 38 1 4.3499 0.2444 2.1041 39 1 5.1967 -1.1860 1.4800 40 1 6.8714 0.3557 2.1912 41 1 6.8691 0.3697 0.4207 42 1 5.5054 2.4259 2.1758 43 1 7.0917 2.6243 1.4006 44 1 3.9230 1.9338 -1.9524 45 1 2.7876 2.4668 -4.0650 46 1 3.7005 4.1798 -5.5662 47 1 7.1779 7.6435 -2.9725 48 1 6.9334 4.8641 -2.8037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178890024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:05 Heat of formation + Delta-G solvation = -34.709668 kcal Electronic energy + Delta-G solvation = -32075.938092 eV Core-core repulsion = 28060.146305 eV Total energy + Delta-G solvation = -4015.791787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.162 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.31920 -40.64637 -39.11763 -38.67117 -37.06844 -35.60127 -35.09593 -33.08409 -31.81017 -31.31382 -30.45413 -28.76985 -27.91959 -27.23985 -25.88480 -24.59020 -23.22492 -22.83801 -22.44778 -21.40401 -20.55073 -19.66427 -18.47039 -17.96702 -17.45656 -17.27566 -16.99574 -16.75483 -16.53503 -16.38609 -16.03905 -15.52505 -15.35415 -15.00815 -14.86833 -14.62601 -14.53421 -14.42361 -14.23476 -13.91069 -13.75660 -13.41865 -13.19068 -12.94297 -12.85925 -12.82139 -12.58840 -12.46602 -12.36045 -12.19968 -12.06371 -11.87847 -11.85980 -11.64627 -11.51183 -11.42814 -11.10708 -10.96395 -10.22785 -9.60938 -9.37303 -9.28220 -9.01475 -8.61468 -6.39922 0.18531 0.40549 0.46075 1.01477 1.36036 1.47270 1.48927 1.79148 1.91608 2.19878 2.47027 2.70063 2.78609 3.58326 3.65418 3.70014 3.87664 3.97407 4.05114 4.13703 4.18867 4.27989 4.35991 4.43289 4.51368 4.52635 4.54485 4.58030 4.62200 4.63944 4.83942 4.86314 4.91372 4.93656 4.96260 5.07912 5.13585 5.15234 5.17782 5.28421 5.30667 5.34053 5.43098 5.47835 5.50646 5.63021 5.68173 5.85051 5.94368 6.03645 6.25990 6.38231 6.48898 6.59797 6.89057 6.93375 7.06824 8.35033 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.003677 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.597968 B = 7613.769526 C = 8731.662636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.140 3.860 4 C -0.198 4.198 5 C -0.067 4.067 6 C -0.163 4.163 7 C 0.180 3.820 8 C -0.134 4.134 9 C -0.070 4.070 10 C -0.102 4.102 11 C -0.132 4.132 12 C 0.110 3.890 13 N -0.562 5.562 14 C 0.571 3.429 15 O -0.576 6.576 16 C -0.137 4.137 17 C -0.187 4.187 18 C -0.100 4.100 19 C -0.205 4.205 20 C 0.070 3.930 21 C -0.500 4.500 22 H 0.082 0.918 23 C 0.029 3.971 24 N -0.837 5.837 25 Si 0.984 3.016 26 H -0.253 1.253 27 H -0.272 1.272 28 H -0.262 1.262 29 C -0.120 4.120 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.042 0.958 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.284 0.716 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -12.078 11.320 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.094 3.906 4 C -0.217 4.217 5 C -0.086 4.086 6 C -0.183 4.183 7 C 0.089 3.911 8 C -0.136 4.136 9 C -0.107 4.107 10 C -0.140 4.140 11 C -0.171 4.171 12 C -0.010 4.010 13 N -0.290 5.290 14 C 0.364 3.636 15 O -0.456 6.456 16 C -0.140 4.140 17 C -0.207 4.207 18 C -0.118 4.118 19 C -0.225 4.225 20 C 0.068 3.932 21 C -0.530 4.530 22 H 0.101 0.899 23 C -0.184 4.184 24 N -0.463 5.463 25 Si 0.805 3.195 26 H -0.177 1.177 27 H -0.197 1.197 28 H -0.187 1.187 29 C -0.141 4.141 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.128 0.872 47 H 0.095 0.905 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.225 -12.041 11.585 20.704 hybrid contribution 0.726 1.273 -0.638 1.598 sum -11.500 -10.768 10.948 19.185 Atomic orbital electron populations 1.23377 0.76332 1.05607 1.02411 1.86034 1.23351 1.25758 1.88502 1.18438 0.90634 0.85230 0.96321 1.21525 1.01391 0.91031 1.07713 1.20968 0.92783 0.98708 0.96111 1.21243 0.95267 0.96919 1.04839 1.16971 0.81945 0.92670 0.99548 1.19311 0.91789 0.94847 1.07699 1.20571 0.97463 0.94347 0.98312 1.21215 0.95220 1.01125 0.96414 1.21456 0.98891 0.93556 1.03161 1.21519 0.98696 0.96145 0.84645 1.45466 1.04760 1.63644 1.15157 1.18878 0.85912 0.74646 0.84158 1.90649 1.16197 1.54660 1.84110 1.19634 0.98511 1.01268 0.94581 1.21254 0.96443 1.03740 0.99218 1.20809 0.99402 0.97485 0.94099 1.21422 0.97150 1.02386 1.01532 1.17869 0.91026 0.92059 0.92249 1.19803 1.31136 1.06786 0.95278 0.89944 1.26793 0.95307 0.99419 0.96889 1.69859 1.33976 1.27975 1.14538 0.85217 0.78638 0.77227 0.78425 1.17686 1.19655 1.18661 1.21364 0.99487 0.97143 0.96097 0.91283 0.91900 0.86284 0.82143 0.83552 0.88172 0.89235 0.93466 0.91064 0.89285 0.87975 0.93877 0.88616 0.90629 0.85172 0.85352 0.87212 0.90534 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.82 113.37 1.11 1.30 16 2 O -0.32 -6.51 9.33 -92.45 -0.86 -7.37 16 3 C 0.14 3.37 6.66 22.46 0.15 3.52 16 4 C -0.20 -4.26 9.05 22.43 0.20 -4.06 16 5 C -0.07 -1.72 10.02 22.25 0.22 -1.50 16 6 C -0.16 -5.37 8.55 22.45 0.19 -5.18 16 7 C 0.18 5.93 2.71 38.07 0.10 6.04 16 8 C -0.13 -3.79 3.29 -19.45 -0.06 -3.85 16 9 C -0.07 -1.80 5.39 30.07 0.16 -1.64 16 10 C -0.10 -2.15 5.61 30.18 0.17 -1.98 16 11 C -0.13 -3.19 5.51 29.70 0.16 -3.03 16 12 C 0.11 3.26 5.78 85.60 0.49 3.76 16 13 N -0.56 -20.91 2.29 -636.53 -1.46 -22.37 16 14 C 0.57 27.24 7.39 86.79 0.64 27.88 16 15 O -0.58 -30.97 16.25 -3.88 -0.06 -31.03 16 16 C -0.14 -6.92 5.30 -20.14 -0.11 -7.03 16 17 C -0.19 -8.26 7.79 22.70 0.18 -8.08 16 18 C -0.10 -4.30 10.01 22.18 0.22 -4.08 16 19 C -0.21 -9.96 9.78 22.77 0.22 -9.74 16 20 C 0.07 3.91 5.54 -21.32 -0.12 3.79 16 21 C -0.50 -27.80 9.06 23.47 0.21 -27.58 16 22 H 0.08 4.32 7.87 -2.91 -0.02 4.30 16 23 C 0.03 1.55 5.25 85.25 0.45 2.00 16 24 N -0.84 -47.10 10.87 21.82 0.24 -46.87 16 25 Si 0.98 40.40 29.57 68.60 2.03 42.43 16 26 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 27 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 28 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 29 C -0.12 -6.91 8.20 23.01 0.19 -6.73 16 30 H 0.07 0.59 7.67 -2.38 -0.02 0.57 16 31 H 0.06 0.64 7.67 -2.39 -0.02 0.62 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.16 2.30 6.33 -2.91 -0.02 2.28 16 34 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.10 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.09 2.08 7.09 -2.39 -0.02 2.06 16 37 H 0.05 1.47 7.82 -2.39 -0.02 1.45 16 38 H 0.07 1.40 7.87 -2.38 -0.02 1.38 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.04 1.25 7.96 -2.39 -0.02 1.23 16 42 H 0.10 2.36 8.06 -2.39 -0.02 2.34 16 43 H 0.08 2.47 7.28 -2.39 -0.02 2.46 16 44 H 0.13 5.15 4.08 -2.91 -0.01 5.14 16 45 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 46 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 47 H 0.28 14.78 8.30 -92.71 -0.77 14.01 16 48 H 0.10 6.12 6.08 -2.91 -0.02 6.11 16 Total: -1.00 -71.81 381.09 5.66 -66.15 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.98 Total: 35.23 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.80 Total: -36.18 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.22 Total: -69.23 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.93 Total: -38.40 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -71.81 5.66 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178890024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.441 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds