Wall clock time and date at job start Tue Mar 31 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47040 * 274.98605 * 3 2 1 5 5 H 1.48500 * 109.47087 * 34.98325 * 3 2 1 6 6 H 1.48507 * 109.47106 * 154.98323 * 3 2 1 7 7 C 1.40051 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00321 * 186.14889 * 7 2 1 9 9 C 1.46377 * 119.99852 * 6.15647 * 7 2 1 10 10 O 1.21693 * 120.00029 * 353.92946 * 9 7 2 11 11 N 1.34779 * 120.00250 * 173.94037 * 9 7 2 12 12 C 1.46498 * 120.00280 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47263 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47072 * 180.02562 * 13 12 11 15 15 N 1.46896 * 109.46891 * 180.02562 * 14 13 12 16 16 C 1.46959 * 110.99747 * 170.00069 * 15 14 13 17 17 C 1.53049 * 109.36070 * 183.18848 * 16 15 14 18 18 N 1.46959 * 109.36747 * 301.59807 * 17 16 15 19 19 C 1.39670 * 111.00166 * 183.19285 * 18 17 16 20 20 C 1.38937 * 120.06935 * 179.97438 * 19 18 17 21 21 C 1.38087 * 119.95232 * 180.29928 * 20 19 18 22 22 C 1.38286 * 120.08663 * 359.44115 * 21 20 19 23 23 C 1.38392 * 120.13651 * 0.55887 * 22 21 20 24 24 Cl 1.73600 * 119.97774 * 179.69727 * 23 22 21 25 25 C 1.38240 * 120.04717 * 359.72509 * 23 22 21 26 26 C 1.46952 * 110.87804 * 59.31886 * 18 17 16 27 27 C 1.46952 * 110.99994 * 293.80001 * 15 14 13 28 28 H 0.96996 * 119.99836 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99624 * 359.97438 * 11 9 7 30 30 H 1.08998 * 109.46891 * 59.99412 * 12 11 9 31 31 H 1.09005 * 109.46851 * 300.00104 * 12 11 9 32 32 H 1.08998 * 109.46952 * 60.00212 * 13 12 11 33 33 H 1.08998 * 109.47127 * 300.00010 * 13 12 11 34 34 H 1.09005 * 109.46651 * 59.99756 * 14 13 12 35 35 H 1.09005 * 109.46890 * 300.00266 * 14 13 12 36 36 H 1.08996 * 109.49066 * 63.22216 * 16 15 14 37 37 H 1.08994 * 109.50645 * 303.16594 * 16 15 14 38 38 H 1.09007 * 109.48470 * 181.63134 * 17 16 15 39 39 H 1.08997 * 109.51055 * 61.58214 * 17 16 15 40 40 H 1.08004 * 120.02241 * 0.02562 * 20 19 18 41 41 H 1.08005 * 119.95730 * 179.72500 * 21 20 19 42 42 H 1.07997 * 119.93621 * 180.28099 * 22 21 20 43 43 H 1.08001 * 120.04509 * 180.02562 * 25 23 22 44 44 H 1.09002 * 109.48309 * 60.65498 * 26 18 17 45 45 H 1.09002 * 109.48498 * 180.71259 * 26 18 17 46 46 H 1.09005 * 109.49154 * 296.77735 * 27 15 14 47 47 H 1.08997 * 109.49098 * 56.82478 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4949 2.6200 0.8027 6 1 3.5871 1.4120 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1367 11 7 1.9611 -3.6343 -0.2572 12 6 1.2349 -4.8995 -0.3921 13 6 2.2349 -6.0510 -0.5142 14 6 1.4764 -7.3723 -0.6558 15 7 2.4366 -8.4779 -0.7724 16 6 1.7579 -9.7775 -0.6720 17 6 2.7989 -10.8985 -0.7181 18 7 3.5637 -10.8022 -1.9693 19 6 4.4765 -11.8535 -2.0802 20 6 5.2996 -11.9459 -3.1957 21 6 6.1970 -12.9897 -3.3058 22 6 6.2854 -13.9366 -2.3018 23 6 5.4673 -13.8481 -1.1891 24 17 5.5764 -15.0435 0.0650 25 6 4.5629 -12.8087 -1.0759 26 6 4.2422 -9.5026 -2.0698 27 6 3.2012 -8.3816 -2.0236 28 1 -0.4850 0.8400 -0.0004 29 1 2.9311 -3.6296 -0.2559 30 1 0.6092 -4.8659 -1.2840 31 1 0.6078 -5.0539 0.4860 32 1 2.8608 -6.0847 0.3775 33 1 2.8616 -5.8964 -1.3925 34 1 0.8507 -7.3382 -1.5477 35 1 0.8494 -7.5271 0.2223 36 1 1.0643 -9.8909 -1.5051 37 1 1.2088 -9.8297 0.2680 38 1 2.2955 -11.8643 -0.6729 39 1 3.4762 -10.8014 0.1304 40 1 5.2346 -11.2044 -3.9782 41 1 6.8337 -13.0642 -4.1749 42 1 6.9913 -14.7495 -2.3883 43 1 3.9248 -12.7395 -0.2074 44 1 4.9359 -9.3893 -1.2366 45 1 4.7911 -9.4507 -3.0100 46 1 2.5240 -8.4791 -2.8722 47 1 3.7043 -7.4157 -2.0690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185560360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:40 Heat of formation + Delta-G solvation = -6.737112 kcal Electronic energy + Delta-G solvation = -27261.816832 eV Core-core repulsion = 23277.097927 eV Total energy + Delta-G solvation = -3984.718905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86289 -38.89154 -37.42370 -36.95208 -35.99703 -33.92041 -32.41464 -31.99845 -31.26303 -30.72967 -29.62135 -27.10010 -26.00676 -24.67760 -23.67462 -22.48669 -22.07645 -20.91840 -20.16031 -19.61704 -18.28712 -17.12345 -16.40829 -16.25820 -15.87616 -15.61516 -15.31987 -15.21248 -14.86513 -14.79913 -14.53356 -14.30296 -14.16358 -13.97927 -13.86648 -13.55383 -12.84932 -12.57523 -12.34020 -12.23175 -12.13208 -11.98002 -11.78545 -11.64117 -11.58298 -11.41793 -11.24813 -11.20818 -11.05679 -10.90885 -10.87143 -10.42515 -10.36722 -10.20223 -10.13924 -9.26936 -8.83955 -8.57027 -8.32092 -7.60139 -7.48073 -6.18450 -4.62465 0.72939 0.82646 1.70036 3.04351 3.14282 3.21373 3.25003 3.36770 3.59077 4.11852 4.30837 4.41497 4.55864 4.59218 4.60407 4.69237 4.72426 4.81678 4.93827 4.96558 5.01655 5.06424 5.12585 5.16937 5.27129 5.34167 5.43854 5.47314 5.54858 5.58245 5.64690 5.69428 5.75296 5.78079 5.85062 5.92096 5.94055 6.10595 6.12556 6.47836 6.59242 6.59913 6.72514 6.83279 6.87302 7.44755 7.95191 8.12347 8.34925 9.03706 9.55717 10.61220 10.79927 Molecular weight = 351.15amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.001448 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.509040 B =19334.150772 C =19679.263224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.768 5.768 12 C 0.134 3.866 13 C -0.123 4.123 14 C 0.060 3.940 15 N -0.540 5.540 16 C 0.055 3.945 17 C 0.051 3.949 18 N -0.489 5.489 19 C 0.130 3.870 20 C -0.138 4.138 21 C -0.081 4.081 22 C -0.142 4.142 23 C -0.006 4.006 24 Cl -0.072 7.072 25 C -0.165 4.165 26 C 0.061 3.939 27 C 0.051 3.949 28 H 0.268 0.732 29 H 0.380 0.620 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 -29.164 -5.212 32.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.424 5.424 12 C 0.009 3.991 13 C -0.162 4.162 14 C -0.068 4.068 15 N -0.265 5.265 16 C -0.073 4.073 17 C -0.075 4.075 18 N -0.204 5.204 19 C 0.032 3.968 20 C -0.158 4.158 21 C -0.100 4.100 22 C -0.161 4.161 23 C -0.034 4.034 24 Cl -0.043 7.043 25 C -0.187 4.187 26 C -0.064 4.064 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.211 0.789 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.474 -29.080 -5.078 31.672 hybrid contribution 0.760 0.562 -0.022 0.946 sum 12.234 -28.518 -5.100 31.448 Atomic orbital electron populations 1.70029 1.07089 1.27213 1.35386 1.25707 0.94588 1.00290 0.92616 0.86369 0.80243 0.81536 0.78649 1.19829 1.20460 1.18895 1.20899 0.94104 0.89646 1.53785 0.91400 1.18232 0.87149 0.82468 0.76397 1.90594 1.14137 1.86519 1.55302 1.46111 1.08549 1.05793 1.81901 1.20781 0.94001 0.84033 1.00323 1.21775 0.98794 0.92991 1.02599 1.22044 0.93444 0.90006 1.01287 1.62174 1.26789 1.02250 1.35262 1.22172 0.95073 0.88149 1.01934 1.22409 0.96195 0.99394 0.89548 1.59267 1.23256 1.02243 1.35610 1.18864 0.91426 0.93038 0.93515 1.20928 0.97252 1.00141 0.97496 1.20981 0.97645 0.93217 0.98185 1.20983 1.00666 1.01052 0.93438 1.20757 0.98848 0.92356 0.91412 1.98380 1.97595 1.56071 1.52281 1.21198 1.01385 0.96381 0.99719 1.22359 0.95745 0.85930 1.02352 1.22266 0.95990 0.98537 0.90959 0.92148 0.78894 0.93681 0.93469 0.90909 0.91858 0.94325 0.90306 0.93726 0.89563 0.89545 0.92354 0.85055 0.84843 0.85100 0.84429 0.92574 0.89495 0.93671 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.23 11.85 55.55 0.66 -22.57 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.18 29.56 -169.99 -5.03 15.16 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.55 -15.58 9.54 -35.63 -0.34 -15.92 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.55 15.94 7.74 -12.99 -0.10 15.84 16 10 O -0.58 -19.12 15.05 5.20 0.08 -19.05 16 11 N -0.77 -17.16 5.55 -61.72 -0.34 -17.50 16 12 C 0.13 2.52 5.67 -4.04 -0.02 2.49 16 13 C -0.12 -1.65 5.26 -26.73 -0.14 -1.79 16 14 C 0.06 0.69 4.96 -3.82 -0.02 0.67 16 15 N -0.54 -5.49 4.71 -234.47 -1.10 -6.59 16 16 C 0.06 0.48 5.61 -3.77 -0.02 0.46 16 17 C 0.05 0.41 4.29 -3.77 -0.02 0.40 16 18 N -0.49 -4.17 4.75 -170.96 -0.81 -4.98 16 19 C 0.13 1.09 5.64 -83.79 -0.47 0.61 16 20 C -0.14 -0.99 9.19 -39.38 -0.36 -1.36 16 21 C -0.08 -0.51 10.04 -39.62 -0.40 -0.91 16 22 C -0.14 -0.98 9.83 -39.51 -0.39 -1.37 16 23 C -0.01 -0.05 6.32 -39.52 -0.25 -0.30 16 24 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.07 16 25 C -0.17 -1.36 8.60 -39.34 -0.34 -1.70 16 26 C 0.06 0.50 5.38 -3.77 -0.02 0.48 16 27 C 0.05 0.47 5.41 -3.77 -0.02 0.45 16 28 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 29 H 0.38 7.40 8.45 -40.82 -0.35 7.06 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.81 6.49 -51.93 -0.34 0.47 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.68 8.07 -51.93 -0.42 0.27 16 38 H 0.09 0.61 7.17 -51.93 -0.37 0.23 16 39 H 0.06 0.49 7.58 -51.93 -0.39 0.09 16 40 H 0.13 0.80 7.19 -52.48 -0.38 0.42 16 41 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 1.04 5.81 -52.49 -0.30 0.73 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.59 6.82 -51.93 -0.35 0.24 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.85 6.34 -51.93 -0.33 0.52 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -34.72 391.90 -12.15 -46.87 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.00 Total: 4.40 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.00 Total: 0.42 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -1.60 Total: -51.64 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.08 Total: -19.05 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.72 -12.15 -46.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185560360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.134 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds