Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00350 * 2 1 4 4 C 1.50709 * 109.46826 * 269.99721 * 3 2 1 5 5 H 1.07997 * 119.99583 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99993 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00051 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99923 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47418 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47362 * 120.00083 * 8 6 4 11 11 H 1.48501 * 109.47207 * 239.99771 * 8 6 4 12 12 C 1.34780 * 119.99206 * 179.97438 * 2 1 3 13 13 O 1.21599 * 119.99265 * 179.97438 * 12 2 1 14 14 N 1.34774 * 120.00688 * 0.02562 * 12 2 1 15 15 C 1.40153 * 120.00592 * 175.87959 * 14 12 2 16 16 C 1.39072 * 119.92161 * 215.32701 * 15 14 12 17 17 C 1.38043 * 120.32627 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.16346 * 0.02572 * 17 16 15 19 19 O 1.35757 * 120.07804 * 179.97438 * 18 17 16 20 20 C 1.35878 * 118.00224 * 5.93367 * 19 18 17 21 21 C 1.38767 * 120.05725 * 247.01170 * 20 19 18 22 22 C 1.38133 * 119.93769 * 179.97438 * 21 20 19 23 23 C 1.38271 * 120.06285 * 359.97435 * 22 21 20 24 24 C 1.38279 * 120.11681 * 0.27898 * 23 22 21 25 25 C 1.38138 * 120.05449 * 359.48888 * 24 23 22 26 26 C 1.40163 * 119.84037 * 0.24977 * 18 17 16 27 27 C 1.43207 * 120.15883 * 179.72439 * 26 18 17 28 28 N 7.28996 * 132.31390 * 162.88782 * 2 1 3 29 29 C 1.38412 * 119.91903 * 35.30060 * 15 14 12 30 30 H 1.08998 * 109.47151 * 270.00976 * 1 2 3 31 31 H 1.09004 * 109.46692 * 30.00033 * 1 2 3 32 32 H 1.08993 * 109.47712 * 150.00185 * 1 2 3 33 33 H 1.08996 * 109.47321 * 29.99589 * 3 2 1 34 34 H 1.09001 * 109.46988 * 150.00633 * 3 2 1 35 35 H 0.96993 * 119.99883 * 180.02562 * 7 6 4 36 36 H 0.97007 * 119.99627 * 355.87001 * 14 12 2 37 37 H 1.07999 * 119.83826 * 0.02562 * 16 15 14 38 38 H 1.07994 * 119.91399 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.03339 * 359.94997 * 21 20 19 40 40 H 1.08005 * 119.97083 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.94437 * 179.97438 * 23 22 21 42 42 H 1.07995 * 119.97298 * 179.72129 * 24 23 22 43 43 H 1.07997 * 120.02883 * 180.23306 * 25 24 23 44 44 H 1.08000 * 120.08660 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0975 1.0959 -2.2417 6 6 3.1271 2.8772 -1.6729 7 7 3.5545 3.6174 -0.6733 8 14 3.4379 3.4166 -3.4341 9 1 2.8599 2.4166 -4.3674 10 1 2.8009 4.7378 -3.6669 11 1 4.9004 3.5241 -3.6681 12 6 2.1388 -1.1673 0.0005 13 8 3.3548 -1.1673 0.0001 14 7 1.4649 -2.3345 0.0005 15 6 2.1628 -3.5468 -0.0861 16 6 1.6145 -4.6142 -0.7891 17 6 2.2950 -5.8118 -0.8803 18 6 3.5313 -5.9589 -0.2701 19 8 4.1987 -7.1376 -0.3604 20 6 3.6783 -8.1058 -1.1591 21 6 3.1890 -9.2784 -0.6013 22 6 2.6600 -10.2609 -1.4155 23 6 2.6172 -10.0765 -2.7852 24 6 3.1089 -8.9112 -3.3442 25 6 3.6346 -7.9235 -2.5340 26 6 4.0877 -4.8895 0.4450 27 6 5.3615 -5.0358 1.0829 28 7 6.3726 -5.1521 1.5862 29 6 3.3963 -3.6786 0.5277 30 1 -0.3633 0.0002 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6086 2.0283 0.5137 34 1 3.1500 1.1382 0.5137 35 1 4.0313 4.4432 -0.8506 36 1 0.4967 -2.3355 0.0607 37 1 0.6521 -4.5053 -1.2668 38 1 1.8628 -6.6365 -1.4275 39 1 3.2221 -9.4230 0.4685 40 1 2.2786 -11.1736 -0.9819 41 1 2.2036 -10.8460 -3.4201 42 1 3.0785 -8.7715 -4.4146 43 1 4.0151 -7.0119 -2.9707 44 1 3.8214 -2.8487 1.0726 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189471108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = 46.020987 kcal Electronic energy + Delta-G solvation = -29109.329364 eV Core-core repulsion = 24993.497977 eV Total energy + Delta-G solvation = -4115.831387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36360 -40.20061 -38.86397 -37.59527 -36.39637 -35.00822 -34.23661 -32.57040 -31.65637 -31.40037 -30.55336 -29.02444 -27.65244 -25.87005 -24.29198 -24.00399 -23.10466 -22.91928 -21.72269 -19.70494 -19.43640 -18.76717 -17.61908 -16.98320 -16.60224 -16.43855 -16.28972 -16.18063 -15.33339 -14.91430 -14.79784 -14.48526 -14.27586 -14.20140 -14.00021 -13.87717 -13.36255 -13.21723 -13.14056 -13.00713 -12.88561 -12.78737 -12.34928 -12.22913 -12.16142 -12.05726 -11.92225 -11.52322 -11.28213 -11.24249 -10.91738 -10.63184 -10.19081 -9.98816 -9.64483 -9.47829 -9.41100 -9.11055 -9.08738 -8.46610 -7.98629 -7.63496 -6.07389 -4.12146 0.60060 0.72260 0.90215 1.19549 2.70375 2.75309 2.89399 3.07295 3.28232 3.36495 3.37303 3.40156 3.64020 3.85188 3.93399 4.34559 4.45943 4.47648 4.48627 4.63763 4.66494 4.76707 4.92772 4.97305 5.07845 5.17629 5.27133 5.31484 5.42284 5.54550 5.63104 5.73970 5.77791 5.89515 5.92129 5.97136 6.03579 6.04588 6.11962 6.29381 6.38385 6.68277 6.90304 7.22536 7.27565 7.41675 7.57042 7.60655 7.89734 8.18491 8.46108 8.88068 9.11802 9.53301 11.00618 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.002263 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.696328 B =12370.279605 C =12653.545886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.696 3.304 13 O -0.568 6.568 14 N -0.694 5.694 15 C 0.153 3.847 16 C -0.085 4.085 17 C -0.175 4.175 18 C 0.140 3.860 19 O -0.253 6.253 20 C 0.087 3.913 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.138 4.138 26 C -0.033 4.033 27 C 0.268 3.732 28 N -0.418 5.418 29 C -0.038 4.038 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 36 H 0.405 0.595 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 -25.915 -1.788 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.139 3.861 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.398 3.602 13 O -0.444 6.444 14 N -0.345 5.345 15 C 0.057 3.943 16 C -0.106 4.106 17 C -0.194 4.194 18 C 0.093 3.907 19 O -0.164 6.164 20 C 0.045 3.955 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.141 4.141 24 C -0.121 4.121 25 C -0.156 4.156 26 C -0.038 4.038 27 C -0.047 4.047 28 N -0.093 5.093 29 C -0.061 4.061 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.945 -25.793 -0.865 27.003 hybrid contribution -0.840 0.507 -1.404 1.713 sum -8.785 -25.286 -2.269 26.864 Atomic orbital electron populations 1.21621 0.81529 1.02573 1.00510 1.47510 1.05827 1.06275 1.74827 1.19291 0.92418 0.76737 0.97615 1.21464 1.36527 1.06266 0.92309 0.92410 1.24930 0.95329 0.96404 0.97452 1.69935 1.38338 1.14356 1.30665 0.86441 0.78141 0.78262 0.84553 1.19835 1.20975 1.20859 1.15943 0.85587 0.80081 0.78586 1.90907 1.11307 1.85358 1.56806 1.42940 1.09952 1.03259 1.78357 1.17230 0.93524 0.85949 0.97629 1.20893 1.00950 0.91997 0.96794 1.20926 0.94402 0.99408 1.04707 1.18889 0.91121 0.84111 0.96559 1.84371 1.47993 1.21024 1.63041 1.18735 0.98557 0.89142 0.89042 1.21201 0.97851 0.93833 1.01040 1.21067 0.98892 0.98740 0.93564 1.21279 0.99877 0.97690 0.95216 1.21091 0.97717 0.93202 1.00122 1.21585 1.00388 1.00991 0.92661 1.15091 0.90716 0.93276 1.04697 1.25199 0.92533 0.93568 0.93445 1.81153 1.11036 1.07552 1.09601 1.21331 0.93597 0.94863 0.96306 0.93509 0.90198 0.93013 0.94662 0.93562 0.92715 0.75818 0.84554 0.84207 0.84894 0.85140 0.85495 0.85181 0.84828 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.17 59.85 0.61 1.74 16 2 N -0.61 -12.05 2.86 -188.74 -0.54 -12.59 16 3 C 0.26 6.49 5.16 -5.19 -0.03 6.46 16 4 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.70 13.58 8.12 -86.92 -0.71 12.88 16 13 O -0.57 -13.52 13.38 5.28 0.07 -13.45 16 14 N -0.69 -9.61 5.18 -14.23 -0.07 -9.69 16 15 C 0.15 2.01 6.29 -83.68 -0.53 1.48 16 16 C -0.08 -0.83 9.95 -39.34 -0.39 -1.23 16 17 C -0.18 -1.72 8.77 -39.50 -0.35 -2.06 16 18 C 0.14 1.68 6.54 -38.70 -0.25 1.42 16 19 O -0.25 -3.07 9.43 -3.10 -0.03 -3.10 16 20 C 0.09 0.86 4.74 -39.19 -0.19 0.67 16 21 C -0.12 -0.97 9.99 -39.42 -0.39 -1.36 16 22 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 23 C -0.12 -0.72 10.04 -39.55 -0.40 -1.11 16 24 C -0.10 -0.69 10.04 -39.60 -0.40 -1.08 16 25 C -0.14 -1.18 8.30 -39.42 -0.33 -1.51 16 26 C -0.03 -0.46 5.75 -106.71 -0.61 -1.07 16 27 C 0.27 4.27 14.86 -22.49 -0.33 3.93 16 28 N -0.42 -7.37 18.53 41.81 0.77 -6.59 16 29 C -0.04 -0.56 8.40 -38.98 -0.33 -0.89 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.16 8.07 -51.93 -0.42 0.75 16 32 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.40 4.11 6.61 -40.82 -0.27 3.84 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.13 6.16 -52.49 -0.32 0.80 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.16 2.80 6.24 -52.49 -0.33 2.47 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -34.74 387.14 -8.67 -43.41 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.98 Total: 1.01 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -5.44 Total: 4.00 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.90 Total: -54.30 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.04 Total: -16.55 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.74 -8.67 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189471108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.426 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds