Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38857 * 120.00635 * 2 1 4 4 C 1.39558 * 119.84358 * 120.80425 * 3 2 1 5 5 C 1.36348 * 120.16265 * 179.71871 * 4 3 2 6 6 C 1.40887 * 119.82988 * 0.55682 * 5 4 3 7 7 C 1.41138 * 120.15403 * 179.69330 * 6 5 4 8 8 H 1.07999 * 120.00050 * 206.82284 * 7 6 5 9 9 C 1.39864 * 119.99771 * 26.82878 * 7 6 5 10 10 N 1.30909 * 120.00252 * 11.89867 * 9 7 6 11 11 Si 1.86805 * 119.99807 * 191.90288 * 9 7 6 12 12 H 1.48499 * 109.47048 * 89.99743 * 11 9 7 13 13 H 1.48499 * 109.47022 * 209.99808 * 11 9 7 14 14 H 1.48499 * 109.46999 * 329.99430 * 11 9 7 15 15 C 1.40889 * 119.69378 * 359.71815 * 6 5 4 16 16 C 1.36340 * 119.83388 * 0.02562 * 15 6 5 17 17 S 1.65606 * 119.99746 * 179.97438 * 2 1 3 18 18 O 1.42105 * 106.39948 * 31.90578 * 17 2 1 19 19 O 1.42099 * 106.40301 * 164.82291 * 17 2 1 20 20 C 1.76200 * 107.22060 * 278.36625 * 17 2 1 21 21 C 1.38248 * 119.98069 * 269.72538 * 20 17 2 22 22 C 1.38218 * 120.00770 * 179.72710 * 21 20 17 23 23 C 1.38354 * 119.98482 * 0.54404 * 22 21 20 24 24 Cl 1.73604 * 120.01058 * 179.70815 * 23 22 21 25 25 C 1.38346 * 119.97586 * 359.72923 * 23 22 21 26 26 C 1.38212 * 119.98671 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.47173 * 89.99903 * 1 2 3 28 28 H 1.09004 * 109.47142 * 210.00262 * 1 2 3 29 29 H 1.09006 * 109.46825 * 330.00221 * 1 2 3 30 30 H 1.07997 * 119.92289 * 359.97438 * 4 3 2 31 31 H 1.07992 * 120.08881 * 180.27105 * 5 4 3 32 32 H 0.97000 * 119.99857 * 180.02562 * 10 9 7 33 33 H 1.08000 * 120.08755 * 179.97438 * 15 6 5 34 34 H 1.08002 * 119.92432 * 179.97438 * 16 15 6 35 35 H 1.07994 * 119.99405 * 359.97438 * 21 20 17 36 36 H 1.07998 * 120.00295 * 180.27564 * 22 21 20 37 37 H 1.08004 * 120.00966 * 179.97438 * 25 23 22 38 38 H 1.08004 * 119.99657 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1594 1.2025 0.0000 4 6 3.0435 1.4939 1.0397 5 6 3.7330 2.6701 1.0433 6 6 3.5423 3.5974 -0.0001 7 6 4.2476 4.8199 0.0002 8 1 3.8314 5.6837 -0.4969 9 6 5.4858 4.9127 0.6440 10 7 6.0997 3.8272 1.0420 11 14 6.2634 6.5859 0.9363 12 1 5.8196 7.1152 2.2508 13 1 7.7424 6.4522 0.9302 14 1 5.8465 7.5203 -0.1400 15 6 2.6438 3.2990 -1.0434 16 6 1.9650 2.1166 -1.0366 17 16 2.2929 -1.4342 0.0006 18 8 1.4913 -2.3606 -0.7194 19 8 3.6329 -1.1242 -0.3564 20 6 2.3417 -2.0077 1.6660 21 6 3.3898 -1.6447 2.4912 22 6 3.4256 -2.0896 3.7994 23 6 2.4182 -2.9075 4.2794 24 17 2.4666 -3.4729 5.9201 25 6 1.3726 -3.2749 3.4514 26 6 1.3346 -2.8244 2.1453 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 3.1850 0.7842 1.8414 31 1 4.4202 2.8925 1.8462 32 1 6.9582 3.8916 1.4889 33 1 2.4924 4.0055 -1.8462 34 1 1.2756 1.8865 -1.8355 35 1 4.1785 -1.0103 2.1149 36 1 4.2421 -1.8024 4.4453 37 1 0.5861 -3.9137 3.8255 38 1 0.5186 -3.1115 1.4986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224710020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -25.531292 kcal Electronic energy + Delta-G solvation = -25951.986267 eV Core-core repulsion = 22105.246317 eV Total energy + Delta-G solvation = -3846.739951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.048 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.44408 -38.23205 -36.95424 -36.82106 -35.53716 -35.45342 -33.22475 -31.40904 -31.21135 -29.79873 -29.15847 -26.45988 -24.38897 -23.34470 -23.20183 -21.16525 -20.97057 -18.93489 -18.08531 -17.44320 -17.17335 -16.54659 -16.31701 -15.70718 -15.25222 -14.87210 -14.41768 -14.21349 -14.01698 -13.86213 -13.76493 -13.02367 -12.91971 -12.87832 -12.58585 -12.24606 -12.09872 -11.96237 -11.94215 -11.78123 -11.70112 -11.56097 -11.25359 -11.16352 -11.14064 -10.89928 -10.74217 -10.52981 -10.01809 -9.75762 -9.42587 -9.34847 -9.29262 -8.71379 -7.68170 -7.25015 -6.82158 -4.44291 0.34626 0.69404 0.98724 1.71556 2.58777 2.98660 3.00122 3.03316 3.06215 3.08811 3.39171 3.86467 4.01147 4.31204 4.49456 4.55864 4.66910 5.00096 5.16440 5.20439 5.27077 5.56695 5.60715 5.66173 5.67334 5.82917 5.88858 5.92170 6.05731 6.16171 6.26511 6.43560 6.67457 6.93643 6.98448 7.11585 7.24044 7.48413 7.84185 7.90696 7.98387 8.16080 8.51351 8.77838 8.85396 10.10429 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.003461 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.506336 B = 8089.050230 C = 9823.768345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.922 5.922 3 C -0.004 4.004 4 C -0.101 4.101 5 C -0.149 4.149 6 C 0.112 3.888 7 C -0.452 4.452 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.790 5.790 11 Si 0.913 3.087 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.262 1.262 15 C -0.214 4.214 16 C -0.078 4.078 17 S 2.679 3.321 18 O -0.967 6.967 19 O -0.934 6.934 20 C -0.671 4.671 21 C -0.001 4.001 22 C -0.131 4.131 23 C 0.013 3.987 24 Cl -0.064 7.064 25 C -0.136 4.136 26 C -0.012 4.012 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.282 0.718 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 -10.356 6.716 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.754 5.754 3 C -0.098 4.098 4 C -0.122 4.122 5 C -0.169 4.169 6 C 0.109 3.891 7 C -0.482 4.482 8 H 0.098 0.902 9 C -0.146 4.146 10 N -0.415 5.415 11 Si 0.738 3.262 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.186 1.186 15 C -0.235 4.235 16 C -0.100 4.100 17 S 2.770 3.230 18 O -0.957 6.957 19 O -0.924 6.924 20 C -0.755 4.755 21 C -0.020 4.020 22 C -0.150 4.150 23 C -0.014 4.014 24 Cl -0.034 7.034 25 C -0.155 4.155 26 C -0.031 4.031 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.060 -10.980 6.281 14.486 hybrid contribution 0.291 0.575 1.178 1.343 sum -6.769 -10.405 7.459 14.482 Atomic orbital electron populations 1.21528 0.79031 1.02439 1.01949 1.54335 1.13651 1.19294 1.88124 1.16644 1.04946 0.88312 0.99894 1.20495 0.98466 0.97704 0.95523 1.21007 1.01590 0.94221 1.00075 1.17705 0.89462 0.92614 0.89277 1.19618 1.02089 0.97145 1.29316 0.90200 1.25960 0.97126 0.98355 0.93176 1.69830 1.13952 1.29231 1.28512 0.86227 0.78261 0.81939 0.79817 1.19272 1.20206 1.18575 1.20676 1.04961 0.97691 1.00149 1.20286 0.99337 0.94774 0.95562 1.02690 0.73908 0.72622 0.73783 1.93540 1.70673 1.62513 1.69012 1.93625 1.34562 1.83227 1.80945 1.31448 1.03642 1.12806 1.27619 1.21102 0.95405 0.93615 0.91908 1.21247 0.98903 0.98384 0.96474 1.21266 0.96647 0.97187 0.86275 1.98390 1.98243 1.87827 1.18982 1.21144 0.98440 1.02247 0.93692 1.20906 0.95916 0.91598 0.94723 0.92463 0.92249 0.90550 0.89561 0.85560 0.90667 0.88405 0.88874 0.82644 0.83799 0.84091 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.29 10.05 59.84 0.60 1.89 16 2 N -0.92 -16.08 3.21 -65.26 -0.21 -16.29 16 3 C 0.00 -0.09 4.90 -83.69 -0.41 -0.50 16 4 C -0.10 -2.23 9.13 -39.77 -0.36 -2.60 16 5 C -0.15 -3.66 8.62 -39.26 -0.34 -4.00 16 6 C 0.11 2.84 5.57 -106.79 -0.59 2.25 16 7 C -0.45 -11.36 9.05 -37.87 -0.34 -11.71 16 8 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 9 C 0.07 1.72 5.24 -17.34 -0.09 1.63 16 10 N -0.79 -19.59 10.76 55.54 0.60 -18.99 16 11 Si 0.91 17.86 29.58 -169.99 -5.03 12.84 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 15 C -0.21 -4.98 9.74 -39.26 -0.38 -5.36 16 16 C -0.08 -1.68 9.60 -39.77 -0.38 -2.06 16 17 S 2.68 46.72 5.35 -107.50 -0.58 46.14 16 18 O -0.97 -17.30 16.66 -57.17 -0.95 -18.26 16 19 O -0.93 -19.75 16.01 -57.17 -0.92 -20.67 16 20 C -0.67 -9.77 5.97 -39.58 -0.24 -10.01 16 21 C 0.00 -0.02 8.30 -39.58 -0.33 -0.34 16 22 C -0.13 -1.60 9.83 -39.55 -0.39 -1.99 16 23 C 0.01 0.15 6.32 -39.50 -0.25 -0.10 16 24 Cl -0.06 -0.64 28.96 -51.86 -1.50 -2.14 16 25 C -0.14 -1.46 9.83 -39.55 -0.39 -1.85 16 26 C -0.01 -0.15 9.52 -39.59 -0.38 -0.52 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 29 H 0.08 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.09 1.68 5.90 -52.49 -0.31 1.38 16 31 H 0.13 3.18 6.09 -52.49 -0.32 2.86 16 32 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.16 2.32 6.85 -52.49 -0.36 1.96 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.15 1.49 7.62 -52.48 -0.40 1.09 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -29.60 352.58 -11.43 -41.02 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.88 Total: 6.30 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -4.27 Total: -35.27 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.39 Total: -35.29 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.87 Total: -38.92 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 46.72 SS G_CDS: -0.58 Total: 46.14 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.60 -11.43 -41.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224710020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.491 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds