Wall clock time and date at job start Tue Mar 31 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39749 * 125.84278 * 2 1 4 4 C 1.36112 * 107.82940 * 180.02562 * 3 2 1 5 5 N 1.39479 * 126.21394 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00056 * 359.97438 * 5 4 3 7 7 O 1.21283 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99785 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.56267 * 333.82889 * 8 6 5 10 10 C 1.53131 * 117.51595 * 188.07367 * 8 6 5 11 11 C 1.52377 * 59.85309 * 252.56202 * 10 8 6 12 12 C 1.53783 * 121.20454 * 110.50840 * 11 10 8 13 13 C 1.54475 * 102.20807 * 170.00761 * 12 11 10 14 14 C 1.51427 * 105.23009 * 334.25587 * 13 12 11 15 15 C 1.38462 * 130.36554 * 196.79532 * 14 13 12 16 16 C 1.38092 * 120.26818 * 180.16344 * 15 14 13 17 17 C 1.38255 * 119.91002 * 359.97438 * 16 15 14 18 18 C 1.38073 * 119.94019 * 359.97438 * 17 16 15 19 19 C 1.38382 * 109.79833 * 16.90562 * 14 13 12 20 20 N 1.35254 * 107.57021 * 359.97438 * 4 3 2 21 21 C 1.46494 * 126.05204 * 179.97438 * 20 4 3 22 22 C 1.50707 * 109.46814 * 90.00358 * 21 20 4 23 23 H 1.08000 * 120.00148 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99959 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99920 * 179.72424 * 24 22 21 27 27 H 1.48498 * 109.47210 * 180.27272 * 26 24 22 28 28 H 1.48502 * 109.47007 * 300.26920 * 26 24 22 29 29 H 1.48500 * 109.47302 * 60.27098 * 26 24 22 30 30 N 1.30859 * 125.83273 * 180.32269 * 2 1 3 31 31 H 1.09003 * 109.46681 * 90.00283 * 1 2 3 32 32 H 1.08994 * 109.47421 * 210.00296 * 1 2 3 33 33 H 1.09003 * 109.46475 * 330.00543 * 1 2 3 34 34 H 1.08002 * 126.08687 * 359.97438 * 3 2 1 35 35 H 0.97006 * 119.99308 * 180.02562 * 5 4 3 36 36 H 1.08990 * 117.51351 * 0.02562 * 10 8 6 37 37 H 1.09004 * 117.51426 * 145.11670 * 10 8 6 38 38 H 1.08996 * 110.85622 * 288.18515 * 12 11 10 39 39 H 1.08997 * 110.85572 * 51.83116 * 12 11 10 40 40 H 1.08998 * 110.29251 * 215.31579 * 13 12 11 41 41 H 1.09000 * 110.28999 * 93.19479 * 13 12 11 42 42 H 1.08002 * 119.86882 * 0.19026 * 15 14 13 43 43 H 1.08001 * 120.04468 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.02524 * 180.02562 * 17 16 15 45 45 H 1.08006 * 119.85799 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.47461 * 330.00600 * 21 20 4 47 47 H 1.08995 * 109.47583 * 210.00386 * 21 20 4 48 48 H 0.97004 * 120.00129 * 359.72898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1328 0.0000 4 6 3.6197 0.7119 -0.0006 5 7 4.7514 1.5273 -0.0013 6 6 4.6158 2.8682 -0.0020 7 8 3.5099 3.3659 -0.0015 8 6 5.8386 3.7491 -0.0021 9 1 6.7360 3.3082 0.4320 10 6 5.6266 5.2537 0.1878 11 6 6.0193 4.7026 -1.1774 12 6 5.0296 4.7100 -2.3544 13 6 5.9332 4.3155 -3.5435 14 6 7.3284 4.7471 -3.1433 15 6 8.4656 4.9299 -3.9117 16 6 9.6477 5.3307 -3.3211 17 6 9.6968 5.5512 -1.9572 18 6 8.5640 5.3707 -1.1887 19 6 7.3771 4.9680 -1.7781 20 7 3.6093 -0.6406 -0.0004 21 6 4.7870 -1.5119 -0.0013 22 6 5.1920 -1.8104 1.4192 23 1 4.6283 -1.3933 2.2406 24 6 6.2823 -2.6162 1.6704 25 7 6.9685 -3.1246 0.6702 26 14 6.7890 -2.9800 3.4311 27 1 7.9864 -3.8584 3.4302 28 1 7.1091 -1.7078 4.1270 29 1 5.6746 -3.6630 4.1359 30 7 2.2731 -1.0609 -0.0060 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3632 0.8901 0.5138 34 1 1.9903 2.1596 -0.0004 35 1 5.6360 1.1291 -0.0020 36 1 4.6029 5.6060 0.3133 37 1 6.3848 5.8025 0.7464 38 1 4.2420 3.9717 -2.2038 39 1 4.6080 5.7045 -2.5006 40 1 5.6199 4.8395 -4.4465 41 1 5.9015 3.2374 -3.7009 42 1 8.4279 4.7587 -4.9774 43 1 10.5325 5.4726 -3.9240 44 1 10.6203 5.8652 -1.4934 45 1 8.6038 5.5437 -0.1233 46 1 5.6079 -1.0126 -0.5159 47 1 4.5493 -2.4435 -0.5148 48 1 6.7052 -2.9360 -0.2441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253426190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:26 Heat of formation + Delta-G solvation = 86.908496 kcal Electronic energy + Delta-G solvation = -30428.887984 eV Core-core repulsion = 26450.662707 eV Total energy + Delta-G solvation = -3978.225277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.25204 -40.61099 -39.21359 -36.94099 -34.82789 -34.08610 -34.00901 -32.10575 -30.91308 -29.13154 -29.08408 -28.41533 -25.73692 -25.44633 -24.34531 -22.94774 -22.91718 -21.25348 -21.07486 -19.99000 -19.79641 -18.86706 -17.56573 -16.86592 -16.75342 -16.32603 -15.58728 -15.45918 -15.23389 -14.96328 -14.75115 -14.25642 -14.11355 -13.96584 -13.87035 -13.38913 -13.26278 -12.86039 -12.82034 -12.56837 -12.46425 -12.36419 -12.12579 -11.97404 -11.84453 -11.72964 -11.69913 -11.31611 -11.17445 -11.02629 -10.83103 -10.63663 -10.55999 -10.40412 -10.23827 -9.98883 -9.58944 -9.31257 -9.00784 -8.68088 -8.62982 -7.93985 -7.51758 -6.68325 -4.45584 1.04406 1.17353 2.10678 2.68221 2.94529 3.29937 3.32891 3.38678 3.50838 3.55540 3.63777 3.84805 4.13722 4.21225 4.32243 4.39938 4.56310 4.67441 4.79949 4.83127 4.87449 5.03449 5.09359 5.20631 5.27398 5.28456 5.35190 5.45004 5.52343 5.59237 5.65346 5.77068 5.81141 5.84562 5.92196 5.96646 5.98906 6.05673 6.12224 6.19479 6.24762 6.29289 6.32963 6.44980 6.47331 6.62009 6.76756 6.79548 7.42568 7.52916 7.57300 7.74247 8.13195 8.28917 8.47934 8.56974 9.24029 10.67996 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.003332 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.787157 B = 8401.497190 C =10433.324221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.052 3.948 3 C -0.294 4.294 4 C 0.304 3.696 5 N -0.636 5.636 6 C 0.553 3.447 7 O -0.512 6.512 8 C -0.169 4.169 9 H 0.128 0.872 10 C -0.123 4.123 11 C -0.057 4.057 12 C -0.088 4.088 13 C -0.083 4.083 14 C -0.085 4.085 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.101 4.101 19 C -0.063 4.063 20 N -0.343 5.343 21 C 0.248 3.752 22 C -0.619 4.619 23 H 0.059 0.941 24 C 0.028 3.972 25 N -0.899 5.899 26 Si 1.074 2.926 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.284 1.284 30 N -0.285 5.285 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.416 0.584 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.032 0.968 47 H 0.046 0.954 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 19.448 -7.038 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.326 4.326 4 C 0.081 3.919 5 N -0.282 5.282 6 C 0.340 3.660 7 O -0.387 6.387 8 C -0.190 4.190 9 H 0.146 0.854 10 C -0.161 4.161 11 C -0.058 4.058 12 C -0.126 4.126 13 C -0.120 4.120 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.135 4.135 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.063 4.063 20 N -0.128 5.128 21 C 0.129 3.871 22 C -0.657 4.657 23 H 0.078 0.922 24 C -0.178 4.178 25 N -0.533 5.533 26 Si 0.901 3.099 27 H -0.204 1.204 28 H -0.212 1.212 29 H -0.211 1.211 30 N -0.111 5.111 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.549 17.643 -6.143 18.855 hybrid contribution -0.245 1.174 -0.794 1.439 sum 2.304 18.817 -6.937 20.187 Atomic orbital electron populations 1.20026 0.87446 1.02537 1.02083 1.22056 0.96571 0.91001 1.01630 1.21266 0.88959 1.00481 1.21910 1.17930 0.88077 0.83172 1.02681 1.42727 1.08234 1.05536 1.71673 1.19427 0.89922 0.80938 0.75758 1.90620 1.26360 1.73766 1.47928 1.22243 0.98624 0.92948 1.05170 0.85367 1.23010 1.04255 0.91967 0.96831 1.20273 0.93502 1.01974 0.90059 1.21892 0.96339 1.03041 0.91280 1.21105 0.90469 1.01723 0.98712 1.20598 0.95513 0.98359 0.94033 1.20620 0.91914 1.00514 0.99728 1.21062 0.97588 0.99744 0.95078 1.21018 0.98023 1.00894 0.94050 1.20617 0.91665 0.99657 0.99948 1.19640 0.92823 0.99865 0.94021 1.49065 1.06317 1.02104 1.55267 1.19639 0.78461 0.89458 0.99509 1.22193 1.16792 1.35761 0.90979 0.92248 1.25917 0.92806 0.92607 1.06435 1.70855 1.40100 1.42305 1.00073 0.83451 0.76587 0.76722 0.73152 1.20366 1.21176 1.21050 1.77369 0.85937 1.21821 1.25929 0.91327 0.91453 0.91041 0.81991 0.74757 0.86561 0.87470 0.89622 0.89858 0.90338 0.89933 0.86160 0.85852 0.85789 0.86181 0.94994 0.93562 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.06 7.21 -82.44 -0.59 0.47 16 3 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 4 C 0.30 6.47 7.66 -153.16 -1.17 5.30 16 5 N -0.64 -11.38 5.42 -11.46 -0.06 -11.44 16 6 C 0.55 8.73 6.51 -10.99 -0.07 8.66 16 7 O -0.51 -8.98 12.56 5.56 0.07 -8.91 16 8 C -0.17 -2.06 6.06 -92.00 -0.56 -2.61 16 9 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 10 C -0.12 -1.27 9.74 -26.98 -0.26 -1.53 16 11 C -0.06 -0.64 2.34 -155.81 -0.36 -1.00 16 12 C -0.09 -0.97 6.62 -25.55 -0.17 -1.14 16 13 C -0.08 -0.85 6.77 -26.75 -0.18 -1.03 16 14 C -0.09 -0.92 6.14 -104.13 -0.64 -1.56 16 15 C -0.11 -1.06 10.03 -39.55 -0.40 -1.46 16 16 C -0.12 -1.04 10.05 -39.63 -0.40 -1.44 16 17 C -0.12 -1.09 10.04 -39.64 -0.40 -1.49 16 18 C -0.10 -0.99 9.98 -39.54 -0.39 -1.39 16 19 C -0.06 -0.70 5.93 -104.41 -0.62 -1.32 16 20 N -0.34 -8.14 3.60 -61.57 -0.22 -8.36 16 21 C 0.25 6.22 5.32 -5.19 -0.03 6.20 16 22 C -0.62 -16.95 9.39 -34.44 -0.32 -17.27 16 23 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 24 C 0.03 0.76 5.46 -17.82 -0.10 0.66 16 25 N -0.90 -25.45 13.65 55.43 0.76 -24.70 16 26 Si 1.07 24.28 29.90 -169.99 -5.08 19.20 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 N -0.29 -6.73 12.57 33.65 0.42 -6.31 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.16 3.19 5.83 -52.49 -0.31 2.88 16 35 H 0.42 7.08 7.96 -40.82 -0.33 6.76 16 36 H 0.12 1.25 7.70 -51.93 -0.40 0.85 16 37 H 0.11 0.87 8.13 -51.93 -0.42 0.45 16 38 H 0.09 1.10 6.30 -51.93 -0.33 0.78 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 0.98 8.05 -52.48 -0.42 0.56 16 46 H 0.03 0.77 7.37 -51.93 -0.38 0.39 16 47 H 0.05 1.23 8.00 -51.93 -0.42 0.82 16 48 H 0.27 7.47 7.22 -40.82 -0.29 7.17 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -32.49 399.83 -11.50 -43.99 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.73 Total: 9.41 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -6.67 Total: -18.91 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.90 Total: -50.80 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.49 -11.50 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253426190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.898 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds