Wall clock time and date at job start Tue Mar 31 2020 06:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39749 * 125.84278 * 2 1 4 4 C 1.36112 * 107.82940 * 180.02562 * 3 2 1 5 5 N 1.39479 * 126.21394 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00056 * 359.97438 * 5 4 3 7 7 O 1.21283 * 120.00071 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99785 * 179.97438 * 6 5 4 9 9 H 1.09004 * 115.56267 * 333.82889 * 8 6 5 10 10 C 1.53131 * 117.51595 * 188.07367 * 8 6 5 11 11 C 1.52377 * 59.85309 * 252.56202 * 10 8 6 12 12 C 1.53783 * 121.20454 * 110.50840 * 11 10 8 13 13 C 1.54475 * 102.20807 * 170.00761 * 12 11 10 14 14 C 1.51427 * 105.23009 * 334.25587 * 13 12 11 15 15 C 1.38462 * 130.36554 * 196.79532 * 14 13 12 16 16 C 1.38092 * 120.26818 * 180.16344 * 15 14 13 17 17 C 1.38255 * 119.91002 * 359.97438 * 16 15 14 18 18 C 1.38073 * 119.94019 * 359.97438 * 17 16 15 19 19 C 1.38382 * 109.79833 * 16.90562 * 14 13 12 20 20 N 1.35254 * 107.57021 * 359.97438 * 4 3 2 21 21 C 1.46494 * 126.05204 * 179.97438 * 20 4 3 22 22 C 1.50707 * 109.46814 * 90.00358 * 21 20 4 23 23 H 1.08000 * 120.00148 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99959 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 119.99920 * 179.72424 * 24 22 21 27 27 H 1.48498 * 109.47210 * 180.27272 * 26 24 22 28 28 H 1.48502 * 109.47007 * 300.26920 * 26 24 22 29 29 H 1.48500 * 109.47302 * 60.27098 * 26 24 22 30 30 N 1.30859 * 125.83273 * 180.32269 * 2 1 3 31 31 H 1.09003 * 109.46681 * 90.00283 * 1 2 3 32 32 H 1.08994 * 109.47421 * 210.00296 * 1 2 3 33 33 H 1.09003 * 109.46475 * 330.00543 * 1 2 3 34 34 H 1.08002 * 126.08687 * 359.97438 * 3 2 1 35 35 H 0.97006 * 119.99308 * 180.02562 * 5 4 3 36 36 H 1.08990 * 117.51351 * 0.02562 * 10 8 6 37 37 H 1.09004 * 117.51426 * 145.11670 * 10 8 6 38 38 H 1.08996 * 110.85622 * 288.18515 * 12 11 10 39 39 H 1.08997 * 110.85572 * 51.83116 * 12 11 10 40 40 H 1.08998 * 110.29251 * 215.31579 * 13 12 11 41 41 H 1.09000 * 110.28999 * 93.19479 * 13 12 11 42 42 H 1.08002 * 119.86882 * 0.19026 * 15 14 13 43 43 H 1.08001 * 120.04468 * 180.02562 * 16 15 14 44 44 H 1.08004 * 120.02524 * 180.02562 * 17 16 15 45 45 H 1.08006 * 119.85799 * 180.02562 * 18 17 16 46 46 H 1.08998 * 109.47461 * 330.00600 * 21 20 4 47 47 H 1.08995 * 109.47583 * 210.00386 * 21 20 4 48 48 H 0.97004 * 120.00129 * 359.72898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1328 0.0000 4 6 3.6197 0.7119 -0.0006 5 7 4.7514 1.5273 -0.0013 6 6 4.6158 2.8682 -0.0020 7 8 3.5099 3.3659 -0.0015 8 6 5.8386 3.7491 -0.0021 9 1 6.7360 3.3082 0.4320 10 6 5.6266 5.2537 0.1878 11 6 6.0193 4.7026 -1.1774 12 6 5.0296 4.7100 -2.3544 13 6 5.9332 4.3155 -3.5435 14 6 7.3284 4.7471 -3.1433 15 6 8.4656 4.9299 -3.9117 16 6 9.6477 5.3307 -3.3211 17 6 9.6968 5.5512 -1.9572 18 6 8.5640 5.3707 -1.1887 19 6 7.3771 4.9680 -1.7781 20 7 3.6093 -0.6406 -0.0004 21 6 4.7870 -1.5119 -0.0013 22 6 5.1920 -1.8104 1.4192 23 1 4.6283 -1.3933 2.2406 24 6 6.2823 -2.6162 1.6704 25 7 6.9685 -3.1246 0.6702 26 14 6.7890 -2.9800 3.4311 27 1 7.9864 -3.8584 3.4302 28 1 7.1091 -1.7078 4.1270 29 1 5.6746 -3.6630 4.1359 30 7 2.2731 -1.0609 -0.0060 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3632 0.8901 0.5138 34 1 1.9903 2.1596 -0.0004 35 1 5.6360 1.1291 -0.0020 36 1 4.6029 5.6060 0.3133 37 1 6.3848 5.8025 0.7464 38 1 4.2420 3.9717 -2.2038 39 1 4.6080 5.7045 -2.5006 40 1 5.6199 4.8395 -4.4465 41 1 5.9015 3.2374 -3.7009 42 1 8.4279 4.7587 -4.9774 43 1 10.5325 5.4726 -3.9240 44 1 10.6203 5.8652 -1.4934 45 1 8.6038 5.5437 -0.1233 46 1 5.6079 -1.0126 -0.5159 47 1 4.5493 -2.4435 -0.5148 48 1 6.7052 -2.9360 -0.2441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253426190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:24 Heat of formation + Delta-G solvation = 70.920028 kcal Electronic energy + Delta-G solvation = -30429.581296 eV Core-core repulsion = 26450.662707 eV Total energy + Delta-G solvation = -3978.918589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.62396 -41.75981 -40.39020 -37.85299 -36.48659 -35.84450 -34.86190 -33.86841 -31.65876 -30.73154 -30.00622 -29.84337 -27.53446 -26.47112 -25.41501 -24.85216 -23.67569 -22.41081 -21.98512 -21.39431 -21.03929 -20.08674 -19.49215 -18.29755 -17.99777 -17.50783 -16.69144 -16.61339 -16.25131 -16.02398 -15.96797 -15.70666 -15.51127 -15.43288 -14.97138 -14.82541 -14.51387 -14.14951 -14.10316 -13.63561 -13.57995 -13.52743 -13.34112 -13.27861 -13.24863 -13.03744 -12.77235 -12.61994 -12.56297 -12.06919 -11.99001 -11.90899 -11.78137 -11.56469 -11.50713 -11.34567 -11.29265 -10.99771 -10.76307 -9.73021 -9.71523 -9.40314 -9.16326 -8.85301 -6.66111 0.27407 0.45868 0.69204 1.20078 1.46752 1.49635 1.53427 1.75584 1.92620 2.06244 2.43537 2.61837 2.93435 2.98598 3.16413 3.41889 3.49570 3.66365 3.67824 3.71463 3.95880 4.12910 4.16560 4.19269 4.35114 4.36514 4.39933 4.45825 4.51550 4.58783 4.63600 4.70579 4.76954 4.80047 4.84017 4.87731 4.89282 4.92410 5.03815 5.05612 5.08429 5.11033 5.15850 5.24081 5.47995 5.54015 5.60571 5.70707 5.75760 5.89751 6.07538 6.08485 6.19608 6.31346 6.84928 6.91085 7.11264 8.49868 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.008509 B = 0.003332 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.787157 B = 8401.497190 C =10433.324221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.061 3.939 3 C -0.304 4.304 4 C 0.301 3.699 5 N -0.639 5.639 6 C 0.554 3.446 7 O -0.529 6.529 8 C -0.180 4.180 9 H 0.140 0.860 10 C -0.107 4.107 11 C -0.052 4.052 12 C -0.089 4.089 13 C -0.081 4.081 14 C -0.103 4.103 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.127 4.127 18 C -0.108 4.108 19 C -0.080 4.080 20 N -0.367 5.367 21 C 0.261 3.739 22 C -0.629 4.629 23 H 0.040 0.960 24 C -0.010 4.010 25 N -0.915 5.915 26 Si 1.117 2.883 27 H -0.273 1.273 28 H -0.267 1.267 29 H -0.279 1.279 30 N -0.332 5.332 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.172 0.828 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.136 0.864 46 H 0.039 0.961 47 H 0.022 0.978 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 21.540 -6.467 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C -0.336 4.336 4 C 0.078 3.922 5 N -0.285 5.285 6 C 0.343 3.657 7 O -0.405 6.405 8 C -0.202 4.202 9 H 0.157 0.843 10 C -0.144 4.144 11 C -0.053 4.053 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.103 4.103 15 C -0.139 4.139 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.126 4.126 19 C -0.080 4.080 20 N -0.152 5.152 21 C 0.141 3.859 22 C -0.667 4.667 23 H 0.059 0.941 24 C -0.211 4.211 25 N -0.550 5.550 26 Si 0.938 3.062 27 H -0.198 1.198 28 H -0.192 1.192 29 H -0.204 1.204 30 N -0.157 5.157 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.189 0.811 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.056 0.944 47 H 0.040 0.960 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.432 19.770 -5.593 20.830 hybrid contribution -0.567 0.622 -1.061 1.354 sum 2.866 20.392 -6.654 21.640 Atomic orbital electron populations 1.20245 0.83619 1.04024 1.04003 1.22945 0.98851 0.89959 0.98637 1.21495 0.88789 1.00956 1.22329 1.18351 0.89622 0.82656 1.01537 1.42962 1.07422 1.06067 1.72070 1.20112 0.90984 0.80240 0.74362 1.90588 1.27538 1.73789 1.48577 1.22253 0.97240 0.93391 1.07276 0.84253 1.23151 1.04826 0.90103 0.96323 1.20296 0.93950 1.00968 0.90090 1.21870 0.95907 1.02922 0.91927 1.21070 0.90563 1.01084 0.99084 1.20759 0.95928 0.99164 0.94452 1.20893 0.91925 1.00476 1.00577 1.21419 0.98065 0.98723 0.95523 1.21374 0.98668 1.00182 0.94201 1.20888 0.91448 0.99309 1.00988 1.19719 0.93054 1.01067 0.94160 1.48896 1.06129 1.02794 1.57404 1.19274 0.79398 0.88968 0.98230 1.22303 1.16905 1.36065 0.91436 0.94147 1.27250 0.92567 0.91862 1.09399 1.70952 1.40714 1.43184 1.00110 0.82916 0.76580 0.77541 0.69195 1.19770 1.19151 1.20431 1.77319 0.86172 1.23704 1.28497 0.89057 0.90869 0.88599 0.81083 0.74563 0.87059 0.84770 0.91975 0.88664 0.88796 0.91245 0.84799 0.83555 0.83497 0.84599 0.94352 0.95976 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.24 0.74 -0.95 16 2 C 0.06 2.48 7.21 43.07 0.31 2.79 16 3 C -0.30 -12.55 9.58 22.14 0.21 -12.33 16 4 C 0.30 13.14 7.66 131.32 1.01 14.15 16 5 N -0.64 -23.42 5.42 -308.57 -1.67 -25.09 16 6 C 0.55 17.61 6.51 87.66 0.57 18.18 16 7 O -0.53 -18.60 12.56 -3.04 -0.04 -18.64 16 8 C -0.18 -4.27 6.06 -11.69 -0.07 -4.34 16 9 H 0.14 2.96 8.14 -2.38 -0.02 2.94 16 10 C -0.11 -2.01 9.74 30.43 0.30 -1.71 16 11 C -0.05 -1.11 2.34 -53.02 -0.12 -1.23 16 12 C -0.09 -1.94 6.62 31.36 0.21 -1.73 16 13 C -0.08 -1.64 6.77 30.58 0.21 -1.43 16 14 C -0.10 -2.13 6.14 -19.54 -0.12 -2.25 16 15 C -0.12 -2.15 10.03 22.29 0.22 -1.93 16 16 C -0.12 -1.84 10.05 22.24 0.22 -1.62 16 17 C -0.13 -1.94 10.04 22.23 0.22 -1.71 16 18 C -0.11 -1.89 9.98 22.29 0.22 -1.67 16 19 C -0.08 -1.64 5.93 -19.73 -0.12 -1.76 16 20 N -0.37 -18.08 3.60 -348.72 -1.26 -19.34 16 21 C 0.26 13.67 5.32 85.64 0.46 14.12 16 22 C -0.63 -35.34 9.39 25.60 0.24 -35.10 16 23 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 24 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 25 N -0.91 -52.47 13.65 21.45 0.29 -52.17 16 26 Si 1.12 48.53 29.90 68.60 2.05 50.58 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 29 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 30 N -0.33 -16.06 12.57 -47.45 -0.60 -16.65 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.17 6.70 5.83 -2.91 -0.02 6.69 16 35 H 0.42 14.71 7.96 -92.70 -0.74 13.97 16 36 H 0.11 2.24 7.70 -2.39 -0.02 2.22 16 37 H 0.13 1.78 8.13 -2.39 -0.02 1.76 16 38 H 0.06 1.64 6.30 -2.39 -0.02 1.63 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.83 8.05 -2.91 -0.02 1.81 16 46 H 0.04 1.93 7.37 -2.39 -0.02 1.92 16 47 H 0.02 1.25 8.00 -2.39 -0.02 1.23 16 48 H 0.26 14.92 7.22 -92.70 -0.67 14.25 16 Total: -1.00 -71.41 399.83 4.31 -67.10 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.35 Total: 34.84 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 5.17 Total: -20.61 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -3.23 Total: -113.26 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.64 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.05 Total: 50.58 kcal Total: -71.41 4.31 -67.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253426190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.018 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds