Wall clock time and date at job start Tue Mar 31 2020 06:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.54501 * 2 1 4 4 C 1.53069 * 117.53296 * 214.28486 * 2 1 3 5 5 C 1.52988 * 117.49985 * 145.66863 * 2 1 3 6 6 H 1.08998 * 117.50399 * 215.03018 * 5 2 1 7 7 C 1.50706 * 117.50156 * 0.02789 * 5 2 1 8 8 C 1.34510 * 125.79052 * 239.91366 * 7 5 2 9 9 C 1.41379 * 106.84068 * 179.78665 * 8 7 5 10 10 C 1.34511 * 106.84346 * 0.37425 * 9 8 7 11 11 C 1.50697 * 125.79338 * 179.89375 * 10 9 8 12 12 H 1.09001 * 115.56119 * 334.01757 * 11 10 9 13 13 C 1.53072 * 117.49580 * 188.31680 * 11 10 9 14 14 C 1.52995 * 117.50456 * 119.70945 * 11 10 9 15 15 H 1.09007 * 117.49809 * 359.97438 * 14 11 10 16 16 C 1.50691 * 117.50305 * 214.97711 * 14 11 10 17 17 O 1.21285 * 119.99934 * 7.86307 * 16 14 11 18 18 N 1.34780 * 120.00188 * 187.85789 * 16 14 11 19 19 C 1.37132 * 119.99858 * 4.48284 * 18 16 14 20 20 H 1.07999 * 119.99869 * 55.35584 * 19 18 16 21 21 C 1.38891 * 120.00035 * 235.35129 * 19 18 16 22 22 N 1.31415 * 119.99867 * 18.36753 * 21 19 18 23 23 Si 1.86806 * 119.99921 * 198.37215 * 21 19 18 24 24 H 1.48502 * 109.46980 * 240.00295 * 23 21 19 25 25 H 1.48498 * 109.47080 * 119.99966 * 23 21 19 26 26 H 1.48500 * 109.47092 * 359.97438 * 23 21 19 27 27 C 1.39792 * 120.00000 * 184.48361 * 18 16 14 28 28 C 1.38966 * 120.07825 * 353.49184 * 27 18 16 29 29 C 1.38080 * 119.91900 * 179.70007 * 28 27 18 30 30 C 1.38304 * 120.08102 * 0.56690 * 29 28 27 31 31 C 1.38311 * 120.15312 * 359.72742 * 30 29 28 32 32 C 1.38085 * 120.07837 * 359.97270 * 31 30 29 33 33 O 1.34299 * 125.78807 * 59.92810 * 7 5 2 34 34 H 1.09001 * 109.47307 * 274.33276 * 1 2 3 35 35 H 1.09005 * 109.47043 * 34.33052 * 1 2 3 36 36 H 1.08998 * 109.47185 * 154.32469 * 1 2 3 37 37 H 1.09003 * 117.49094 * 145.04150 * 4 2 1 38 38 H 1.08997 * 117.51241 * 0.02562 * 4 2 1 39 39 H 1.08008 * 126.57887 * 0.03770 * 8 7 5 40 40 H 1.08006 * 126.57967 * 180.23775 * 9 8 7 41 41 H 1.09004 * 117.51903 * 145.03348 * 13 11 10 42 42 H 1.09000 * 117.49292 * 359.97438 * 13 11 10 43 43 H 0.96994 * 120.00594 * 357.94060 * 22 21 19 44 44 H 1.08003 * 120.03663 * 359.96740 * 28 27 18 45 45 H 1.08007 * 119.95807 * 180.29717 * 29 28 27 46 46 H 1.07995 * 119.92349 * 179.74454 * 30 29 28 47 47 H 1.08001 * 119.96151 * 179.97438 * 31 30 29 48 48 H 1.07993 * 120.03560 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2376 -1.1215 -0.7646 5 6 2.2364 -1.1206 0.7653 6 1 3.1711 -0.8745 1.2693 7 6 1.3720 -2.1404 1.4610 8 6 1.3685 -2.3995 2.7810 9 6 0.4096 -3.4159 2.9963 10 6 -0.1095 -3.7230 1.7941 11 6 -1.1715 -4.7594 1.5313 12 1 -1.2261 -5.5712 2.2567 13 6 -1.4869 -5.0936 0.0712 14 6 -2.4831 -4.2837 0.9035 15 1 -2.5781 -3.2209 0.6808 16 6 -3.7515 -4.9732 1.3352 17 8 -3.7283 -5.7675 2.2515 18 7 -4.9119 -4.7072 0.7033 19 6 -4.9229 -3.8801 -0.3905 20 1 -4.2898 -4.0972 -1.2381 21 6 -5.7484 -2.7632 -0.4083 22 7 -6.2371 -2.2894 0.7158 23 14 -6.1640 -1.9348 -2.0302 24 1 -5.6951 -0.5260 -2.0009 25 1 -7.6341 -1.9629 -2.2379 26 1 -5.4927 -2.6564 -3.1409 27 6 -6.1041 -5.2743 1.1628 28 6 -6.0789 -6.2166 2.1839 29 6 -7.2590 -6.7701 2.6395 30 6 -8.4640 -6.3966 2.0729 31 6 -8.4923 -5.4636 1.0523 32 6 -7.3166 -4.9013 0.5959 33 8 0.4748 -2.9450 0.8683 34 1 -0.3634 0.0776 1.0247 35 1 -0.3633 0.8487 -0.5796 36 1 -0.3633 -0.9262 -0.4452 37 1 3.1729 -0.8754 -1.2674 38 1 1.6131 -1.8594 -1.2682 39 1 1.9781 -1.9199 3.5327 40 1 0.1462 -3.8619 3.9441 41 1 -1.7491 -6.1252 -0.1641 42 1 -0.9265 -4.5634 -0.6988 43 1 -6.0457 -2.7370 1.5548 44 1 -5.1377 -6.5123 2.6235 45 1 -7.2405 -7.4990 3.4364 46 1 -9.3851 -6.8342 2.4285 47 1 -9.4350 -5.1744 0.6118 48 1 -7.3394 -4.1732 -0.2013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369090474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:18 Heat of formation + Delta-G solvation = 73.961337 kcal Electronic energy + Delta-G solvation = -30784.175669 eV Core-core repulsion = 26773.096210 eV Total energy + Delta-G solvation = -4011.079459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.162 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.53546 -40.06324 -38.05704 -37.69728 -35.98310 -35.23520 -32.88057 -31.84316 -29.85684 -29.76175 -29.02240 -28.26827 -24.97187 -24.37744 -23.53784 -21.97218 -21.73285 -21.44450 -21.02563 -20.42992 -19.58895 -19.40532 -18.00048 -16.96680 -16.25585 -16.00139 -15.71162 -15.57300 -15.33336 -14.87812 -14.50547 -14.21379 -13.89231 -13.40933 -13.23193 -13.21167 -13.08718 -12.92840 -12.67770 -12.58383 -12.47067 -12.24273 -11.95403 -11.81637 -11.74796 -11.65129 -11.55060 -11.22205 -10.94958 -10.79498 -10.49194 -10.40114 -10.26164 -10.19516 -10.12688 -9.97517 -9.60057 -9.44828 -8.78517 -8.34717 -8.00419 -7.92414 -7.24839 -6.60574 -4.53720 1.73132 2.16163 2.34768 2.65837 2.89927 3.15943 3.19971 3.35754 3.45094 3.69767 3.94876 4.21897 4.25878 4.38629 4.54378 4.70805 4.73647 4.84160 4.94576 5.05293 5.17342 5.20004 5.24283 5.32179 5.52171 5.54832 5.64135 5.71026 5.76114 5.78704 5.84303 5.88515 5.92002 5.98513 5.99925 6.01123 6.12668 6.21491 6.29231 6.35076 6.45453 6.48341 6.54765 6.65671 6.72746 6.94809 7.31611 7.34477 7.41376 7.45844 7.52859 7.77073 8.03293 8.24866 8.78207 9.13517 9.42250 10.40670 Molecular weight = 351.16amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003304 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.136630 B = 8472.534390 C =10176.813812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.137 4.137 3 H 0.111 0.889 4 C -0.168 4.168 5 C -0.081 4.081 6 H 0.131 0.869 7 C 0.015 3.985 8 C -0.203 4.203 9 C -0.206 4.206 10 C 0.034 3.966 11 C -0.068 4.068 12 H 0.142 0.858 13 C -0.142 4.142 14 C -0.124 4.124 15 H 0.130 0.870 16 C 0.517 3.483 17 O -0.565 6.565 18 N -0.386 5.386 19 C -0.448 4.448 20 H 0.087 0.913 21 C 0.024 3.976 22 N -0.851 5.851 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.278 1.278 26 H -0.279 1.279 27 C 0.159 3.841 28 C -0.188 4.188 29 C -0.116 4.116 30 C -0.170 4.170 31 C -0.114 4.114 32 C -0.129 4.129 33 O -0.168 6.168 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.281 0.719 44 H 0.177 0.823 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.932 1.714 -1.559 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.155 4.155 3 H 0.129 0.871 4 C -0.205 4.205 5 C -0.099 4.099 6 H 0.149 0.851 7 C -0.035 4.035 8 C -0.222 4.222 9 C -0.226 4.226 10 C -0.016 4.016 11 C -0.086 4.086 12 H 0.160 0.840 13 C -0.180 4.180 14 C -0.145 4.145 15 H 0.148 0.852 16 C 0.309 3.691 17 O -0.450 6.450 18 N -0.093 5.093 19 C -0.575 4.575 20 H 0.105 0.895 21 C -0.189 4.189 22 N -0.481 5.481 23 Si 0.902 3.098 24 H -0.206 1.206 25 H -0.203 1.203 26 H -0.205 1.205 27 C 0.063 3.937 28 C -0.208 4.208 29 C -0.135 4.135 30 C -0.189 4.189 31 C -0.133 4.133 32 C -0.149 4.149 33 O -0.065 6.065 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.193 0.807 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.128 0.872 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.114 2.657 -2.105 11.619 hybrid contribution 0.683 -1.069 0.969 1.597 sum 11.796 1.588 -1.136 11.957 Atomic orbital electron populations 1.21395 0.91950 1.02664 1.02397 1.22525 0.96245 0.93937 1.02816 0.87129 1.23201 1.02917 1.01820 0.92566 1.20562 0.98651 0.96614 0.94058 0.85143 1.21158 0.94727 0.95956 0.91610 1.21398 1.03546 1.02023 0.95251 1.21448 1.01020 1.01851 0.98231 1.21380 0.97739 0.95522 0.86932 1.20577 0.91925 0.97416 0.98686 0.84004 1.22959 1.01021 1.01318 0.92689 1.22032 0.87635 1.01584 1.03255 0.85203 1.19968 0.85292 0.82551 0.81261 1.90185 1.85744 1.37641 1.31402 1.41071 1.03072 1.39429 1.25754 1.20209 1.32704 1.08570 0.96008 0.89525 1.26609 0.94009 0.93841 1.04412 1.70652 1.41854 1.36411 0.99137 0.83365 0.77352 0.76128 0.72931 1.20616 1.20321 1.20451 1.18532 0.87403 0.93037 0.94719 1.22790 1.01456 0.97982 0.98567 1.20939 0.92642 1.00208 0.99729 1.20879 0.97249 1.01125 0.99653 1.20827 0.97312 0.97479 0.97671 1.21240 0.90577 1.01055 1.02053 1.83893 1.43697 1.41294 1.37586 0.92054 0.91880 0.91770 0.88187 0.87986 0.83796 0.83521 0.88006 0.87821 0.90743 0.80732 0.87366 0.87735 0.87198 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.15 37.16 0.34 -1.22 16 2 C -0.14 -1.38 6.41 -90.59 -0.58 -1.96 16 3 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.17 -1.63 9.82 -26.70 -0.26 -1.90 16 5 C -0.08 -0.85 6.23 -91.78 -0.57 -1.42 16 6 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 7 C 0.02 0.21 5.89 -35.62 -0.21 0.00 16 8 C -0.20 -2.74 10.81 -39.71 -0.43 -3.17 16 9 C -0.21 -3.09 10.81 -39.71 -0.43 -3.52 16 10 C 0.03 0.55 6.80 -35.63 -0.24 0.31 16 11 C -0.07 -1.14 5.75 -91.74 -0.53 -1.66 16 12 H 0.14 2.37 7.69 -51.93 -0.40 1.97 16 13 C -0.14 -2.32 9.87 -26.69 -0.26 -2.59 16 14 C -0.12 -2.44 4.82 -91.78 -0.44 -2.88 16 15 H 0.13 2.73 7.86 -51.93 -0.41 2.32 16 16 C 0.52 11.98 7.35 -10.99 -0.08 11.90 16 17 O -0.56 -13.49 12.68 5.55 0.07 -13.42 16 18 N -0.39 -9.52 2.27 -58.98 -0.13 -9.65 16 19 C -0.45 -11.00 7.47 -14.94 -0.11 -11.11 16 20 H 0.09 2.09 7.90 -52.49 -0.41 1.67 16 21 C 0.02 0.58 3.15 -17.49 -0.06 0.52 16 22 N -0.85 -22.74 12.48 55.49 0.69 -22.05 16 23 Si 1.08 21.76 29.82 -169.99 -5.07 16.69 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 27 C 0.16 3.92 5.58 -83.69 -0.47 3.45 16 28 C -0.19 -4.34 9.05 -39.37 -0.36 -4.70 16 29 C -0.12 -2.34 10.04 -39.61 -0.40 -2.74 16 30 C -0.17 -3.26 10.04 -39.53 -0.40 -3.66 16 31 C -0.11 -2.35 10.04 -39.61 -0.40 -2.74 16 32 C -0.13 -3.04 8.04 -39.37 -0.32 -3.36 16 33 O -0.17 -2.62 9.34 5.70 0.05 -2.57 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.89 7.27 -51.93 -0.38 0.51 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.13 7.88 -51.93 -0.41 0.72 16 39 H 0.14 1.58 8.06 -52.48 -0.42 1.15 16 40 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 41 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.10 1.56 7.96 -51.93 -0.41 1.14 16 43 H 0.28 7.96 7.18 -40.82 -0.29 7.66 16 44 H 0.18 4.16 4.53 -56.25 -0.25 3.91 16 45 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 46 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 47 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 48 H 0.14 3.40 5.06 -52.49 -0.27 3.13 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -28.17 397.50 -11.28 -39.45 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -6.68 Total: 18.02 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -6.20 Total: -32.45 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.56 Total: -31.70 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.12 Total: -15.99 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.07 Total: 16.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.17 -11.28 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369090474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.408 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds