Wall clock time and date at job start Tue Mar 31 2020 06:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30453 * 119.99846 * 2 1 4 4 N 1.40107 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.34782 * 119.99995 * 180.02562 * 4 3 2 6 6 O 1.21927 * 119.99663 * 359.97438 * 5 4 3 7 7 C 1.41021 * 119.99913 * 180.02562 * 5 4 3 8 8 H 1.07995 * 120.00347 * 359.97438 * 7 5 4 9 9 C 1.40230 * 119.99836 * 179.97438 * 7 5 4 10 10 N 1.30589 * 120.00038 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99854 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47145 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46802 * 119.99786 * 11 9 7 14 14 H 1.48494 * 109.47124 * 239.99580 * 11 9 7 15 15 C 1.47046 * 120.00355 * 179.97438 * 2 1 3 16 16 C 1.40099 * 120.14089 * 0.02562 * 15 2 1 17 17 C 1.37858 * 119.95249 * 179.97438 * 16 15 2 18 18 C 1.38358 * 120.25885 * 359.97438 * 17 16 15 19 19 C 1.39131 * 120.29825 * 0.02589 * 18 17 16 20 20 N 1.39851 * 119.98115 * 179.97438 * 19 18 17 21 21 C 1.34775 * 119.99733 * 213.30409 * 20 19 18 22 22 O 1.21563 * 120.00188 * 5.29144 * 21 20 19 23 23 C 1.47818 * 120.00005 * 185.28469 * 21 20 19 24 24 C 1.39594 * 120.13944 * 359.73023 * 23 21 20 25 25 C 1.37961 * 119.84250 * 179.71864 * 24 23 21 26 26 C 1.38359 * 120.14765 * 0.55402 * 25 24 23 27 27 C 1.38353 * 120.29521 * 359.72017 * 26 25 24 28 28 C 1.37958 * 120.15138 * 359.97438 * 27 26 25 29 29 C 1.38504 * 120.03331 * 359.73890 * 19 18 17 30 30 H 1.09001 * 109.47210 * 270.00126 * 1 2 3 31 31 H 1.08997 * 109.47145 * 30.00408 * 1 2 3 32 32 H 1.08999 * 109.46839 * 149.99876 * 1 2 3 33 33 H 0.96994 * 120.00234 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00106 * 180.02562 * 10 9 7 35 35 H 1.07995 * 120.02179 * 359.95321 * 16 15 2 36 36 H 1.07999 * 119.86274 * 179.97438 * 17 16 15 37 37 H 1.08007 * 119.85318 * 179.97438 * 18 17 16 38 38 H 0.96993 * 119.99749 * 33.30981 * 20 19 18 39 39 H 1.07996 * 120.08111 * 359.97320 * 24 23 21 40 40 H 1.08007 * 119.92015 * 180.29825 * 25 24 23 41 41 H 1.07996 * 119.84862 * 179.69528 * 26 25 24 42 42 H 1.08000 * 119.92754 * 180.02562 * 27 26 25 43 43 H 1.07992 * 120.07670 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.12637 * 180.25697 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1298 0.0000 4 7 1.4587 2.3431 -0.0005 5 6 2.1326 3.5104 -0.0011 6 8 3.3518 3.5103 -0.0006 7 6 1.4274 4.7316 -0.0011 8 1 0.3474 4.7316 -0.0011 9 6 2.1285 5.9461 -0.0011 10 7 3.4344 5.9461 -0.0006 11 14 1.1945 7.5637 -0.0018 12 1 -0.2655 7.2923 -0.0029 13 1 1.5527 8.3427 1.2107 14 1 1.5537 8.3422 -1.2142 15 6 2.2423 -1.2734 0.0006 16 6 1.5449 -2.4885 0.0006 17 6 2.2382 -3.6800 0.0006 18 6 3.6218 -3.6816 0.0000 19 6 4.3251 -2.4812 0.0000 20 7 5.7235 -2.4906 0.0000 21 6 6.4039 -1.5196 0.6409 22 8 5.8055 -0.6909 1.2989 23 6 7.8778 -1.4624 0.5439 24 6 8.5684 -2.4159 -0.2061 25 6 9.9435 -2.3533 -0.2972 26 6 10.6389 -1.3552 0.3620 27 6 9.9609 -0.4105 1.1116 28 6 8.5854 -0.4578 1.2060 29 6 3.6409 -1.2769 -0.0049 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 0.4887 2.3431 -0.0005 34 1 3.9194 6.7861 -0.0002 35 1 0.4649 -2.4916 0.0009 36 1 1.6991 -4.6158 0.0010 37 1 4.1583 -4.6190 0.0005 38 1 6.2038 -3.1958 -0.4613 39 1 8.0271 -3.1983 -0.7172 40 1 10.4787 -3.0876 -0.8812 41 1 11.7158 -1.3137 0.2913 42 1 10.5096 0.3663 1.6234 43 1 8.0574 0.2800 1.7918 44 1 4.1854 -0.3442 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408719443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:49 Heat of formation + Delta-G solvation = 29.566799 kcal Electronic energy + Delta-G solvation = -28952.925778 eV Core-core repulsion = 24836.380884 eV Total energy + Delta-G solvation = -4116.544894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.72334 -39.21129 -38.18174 -37.55058 -35.85068 -34.66637 -32.72165 -31.94577 -31.62906 -31.14885 -29.86626 -29.17687 -27.96255 -26.28450 -24.43203 -23.29984 -22.85173 -22.10643 -20.64370 -20.17678 -19.00864 -18.33428 -17.73398 -16.59383 -16.42511 -16.09092 -15.73585 -15.51183 -15.27331 -15.05463 -14.75656 -14.24112 -14.02851 -13.93544 -13.88986 -13.71246 -13.52582 -13.24180 -12.88333 -12.66380 -12.63506 -12.43466 -11.95463 -11.85181 -11.51838 -11.42922 -11.33186 -11.21537 -11.14180 -10.68150 -10.60195 -10.30690 -10.24099 -9.85565 -9.33610 -9.25078 -9.19120 -9.04694 -8.75228 -8.05855 -7.69482 -7.17122 -6.34761 -4.89321 0.60456 1.12857 1.16653 1.57473 2.70129 2.93000 2.97225 3.08177 3.13508 3.18788 3.69419 3.78657 4.11929 4.14435 4.43930 4.50260 4.53496 4.67337 4.84183 4.94356 5.03784 5.11742 5.21057 5.24978 5.31063 5.47399 5.53355 5.58563 5.71821 5.75401 5.76573 5.83470 5.85451 6.02498 6.06034 6.15739 6.22387 6.26589 6.39641 6.52007 6.60555 6.64154 6.73058 6.99797 7.19908 7.25434 7.34810 7.88479 8.04516 8.11003 8.75665 8.81460 9.35649 10.44604 10.71045 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.002933 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.363302 B = 9543.189030 C =12834.726057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.033 3.967 3 N -0.176 5.176 4 N -0.586 5.586 5 C 0.556 3.444 6 O -0.549 6.549 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.088 3.912 10 N -0.744 5.744 11 Si 0.916 3.084 12 H -0.262 1.262 13 H -0.273 1.273 14 H -0.273 1.273 15 C 0.011 3.989 16 C -0.127 4.127 17 C -0.102 4.102 18 C -0.153 4.153 19 C 0.144 3.856 20 N -0.672 5.672 21 C 0.550 3.450 22 O -0.493 6.493 23 C -0.131 4.131 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.096 4.096 27 C -0.126 4.126 28 C -0.055 4.055 29 C -0.095 4.095 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.369 0.631 34 H 0.273 0.727 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.406 0.594 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.141 0.859 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -20.989 -1.198 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 N 0.013 4.987 4 N -0.333 5.333 5 C 0.364 3.636 6 O -0.428 6.428 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.372 5.372 11 Si 0.740 3.260 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.199 1.199 15 C 0.009 3.991 16 C -0.148 4.148 17 C -0.121 4.121 18 C -0.174 4.174 19 C 0.050 3.950 20 N -0.318 5.318 21 C 0.338 3.662 22 O -0.366 6.366 23 C -0.134 4.134 24 C -0.107 4.107 25 C -0.148 4.148 26 C -0.114 4.114 27 C -0.144 4.144 28 C -0.073 4.073 29 C -0.117 4.117 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.206 0.794 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.243 0.757 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.159 0.841 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.870 -19.572 -0.718 21.107 hybrid contribution -1.510 0.171 -0.276 1.545 sum 6.360 -19.401 -0.994 20.441 Atomic orbital electron populations 1.21077 0.92891 1.03010 1.02632 1.22765 0.92950 0.91418 1.08384 1.74957 1.26865 0.92484 1.04372 1.48131 1.07640 1.01813 1.75708 1.16928 0.87898 0.80383 0.78359 1.90725 1.13435 1.85244 1.53353 1.19833 0.94370 0.89530 1.53596 0.91103 1.25771 0.94669 1.00646 0.92492 1.70024 1.07338 1.27854 1.31968 0.86172 0.80432 0.80908 0.78458 1.18536 1.19847 1.19872 1.18211 0.91888 0.90682 0.98356 1.21245 0.99895 0.91192 1.02458 1.20707 0.93195 0.97749 1.00442 1.20867 0.94594 0.95883 1.06081 1.17586 0.81977 0.94064 1.01368 1.43330 1.04893 1.29206 1.54331 1.18449 0.87335 0.81173 0.79205 1.90938 1.69618 1.37829 1.38253 1.19884 0.92308 0.98786 1.02434 1.21284 0.94821 0.97437 0.97161 1.21082 0.93875 0.99313 1.00522 1.21395 1.00259 0.94143 0.95582 1.21220 0.94040 0.99427 0.99708 1.21429 0.94065 0.96123 0.95725 1.21538 0.93610 0.98195 0.98376 0.90972 0.91630 0.90718 0.79369 0.91580 0.85500 0.85698 0.86124 0.75691 0.85727 0.85397 0.85549 0.85073 0.84132 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.04 36.01 0.33 -1.65 16 2 C 0.03 0.63 7.11 -79.61 -0.57 0.07 16 3 N -0.18 -4.31 10.18 35.11 0.36 -3.95 16 4 N -0.59 -14.86 6.11 28.99 0.18 -14.68 16 5 C 0.56 16.91 7.67 -15.20 -0.12 16.79 16 6 O -0.55 -19.16 15.21 4.98 0.08 -19.09 16 7 C -0.54 -15.33 9.28 -37.78 -0.35 -15.68 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.09 2.44 5.50 -17.33 -0.10 2.35 16 10 N -0.74 -22.43 11.71 55.56 0.65 -21.78 16 11 Si 0.92 19.86 29.56 -169.99 -5.02 14.83 16 12 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 C 0.01 0.20 5.87 -105.02 -0.62 -0.42 16 16 C -0.13 -1.64 9.37 -39.02 -0.37 -2.01 16 17 C -0.10 -1.12 10.02 -39.68 -0.40 -1.52 16 18 C -0.15 -1.75 9.96 -39.21 -0.39 -2.14 16 19 C 0.14 2.11 6.27 -83.77 -0.53 1.58 16 20 N -0.67 -8.52 5.28 -10.76 -0.06 -8.58 16 21 C 0.55 8.61 7.50 -12.34 -0.09 8.51 16 22 O -0.49 -10.25 14.04 5.31 0.07 -10.17 16 23 C -0.13 -1.67 5.87 -104.97 -0.62 -2.29 16 24 C -0.09 -0.81 9.54 -39.18 -0.37 -1.18 16 25 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 26 C -0.10 -0.79 10.04 -39.49 -0.40 -1.19 16 27 C -0.13 -1.26 10.03 -39.64 -0.40 -1.66 16 28 C -0.05 -0.71 9.60 -39.18 -0.38 -1.08 16 29 C -0.10 -1.77 8.18 -38.88 -0.32 -2.09 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.96 6.36 -51.93 -0.33 0.63 16 32 H 0.07 0.85 6.46 -51.93 -0.34 0.51 16 33 H 0.37 7.91 6.41 -182.60 -1.17 6.74 16 34 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 35 H 0.13 1.31 6.35 -52.49 -0.33 0.98 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.41 3.41 6.87 -40.82 -0.28 3.13 16 39 H 0.12 0.76 6.42 -52.49 -0.34 0.43 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.14 2.01 7.65 -52.49 -0.40 1.61 16 44 H 0.15 3.43 5.91 -52.49 -0.31 3.12 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -40.47 381.29 -9.65 -50.12 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.58 Total: 12.57 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -6.07 Total: -5.03 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 1.13 Total: -48.99 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.15 Total: -29.26 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.47 -9.65 -50.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.690 kcal (2) G-P(sol) polarization free energy of solvation -40.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds