Wall clock time and date at job start Tue Mar 31 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30453 * 119.99846 * 2 1 4 4 N 1.40107 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.34782 * 119.99995 * 180.02562 * 4 3 2 6 6 O 1.21927 * 119.99663 * 359.97438 * 5 4 3 7 7 C 1.41021 * 119.99913 * 180.02562 * 5 4 3 8 8 H 1.07995 * 120.00347 * 359.97438 * 7 5 4 9 9 C 1.40230 * 119.99836 * 179.97438 * 7 5 4 10 10 N 1.30589 * 120.00038 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99854 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47145 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46802 * 119.99786 * 11 9 7 14 14 H 1.48494 * 109.47124 * 239.99580 * 11 9 7 15 15 C 1.47046 * 120.00355 * 179.97438 * 2 1 3 16 16 C 1.40099 * 120.14089 * 0.02562 * 15 2 1 17 17 C 1.37858 * 119.95249 * 179.97438 * 16 15 2 18 18 C 1.38358 * 120.25885 * 359.97438 * 17 16 15 19 19 C 1.39131 * 120.29825 * 0.02589 * 18 17 16 20 20 N 1.39851 * 119.98115 * 179.97438 * 19 18 17 21 21 C 1.34775 * 119.99733 * 213.30409 * 20 19 18 22 22 O 1.21563 * 120.00188 * 5.29144 * 21 20 19 23 23 C 1.47818 * 120.00005 * 185.28469 * 21 20 19 24 24 C 1.39594 * 120.13944 * 359.73023 * 23 21 20 25 25 C 1.37961 * 119.84250 * 179.71864 * 24 23 21 26 26 C 1.38359 * 120.14765 * 0.55402 * 25 24 23 27 27 C 1.38353 * 120.29521 * 359.72017 * 26 25 24 28 28 C 1.37958 * 120.15138 * 359.97438 * 27 26 25 29 29 C 1.38504 * 120.03331 * 359.73890 * 19 18 17 30 30 H 1.09001 * 109.47210 * 270.00126 * 1 2 3 31 31 H 1.08997 * 109.47145 * 30.00408 * 1 2 3 32 32 H 1.08999 * 109.46839 * 149.99876 * 1 2 3 33 33 H 0.96994 * 120.00234 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00106 * 180.02562 * 10 9 7 35 35 H 1.07995 * 120.02179 * 359.95321 * 16 15 2 36 36 H 1.07999 * 119.86274 * 179.97438 * 17 16 15 37 37 H 1.08007 * 119.85318 * 179.97438 * 18 17 16 38 38 H 0.96993 * 119.99749 * 33.30981 * 20 19 18 39 39 H 1.07996 * 120.08111 * 359.97320 * 24 23 21 40 40 H 1.08007 * 119.92015 * 180.29825 * 25 24 23 41 41 H 1.07996 * 119.84862 * 179.69528 * 26 25 24 42 42 H 1.08000 * 119.92754 * 180.02562 * 27 26 25 43 43 H 1.07992 * 120.07670 * 179.97438 * 28 27 26 44 44 H 1.07998 * 120.12637 * 180.25697 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1298 0.0000 4 7 1.4587 2.3431 -0.0005 5 6 2.1326 3.5104 -0.0011 6 8 3.3518 3.5103 -0.0006 7 6 1.4274 4.7316 -0.0011 8 1 0.3474 4.7316 -0.0011 9 6 2.1285 5.9461 -0.0011 10 7 3.4344 5.9461 -0.0006 11 14 1.1945 7.5637 -0.0018 12 1 -0.2655 7.2923 -0.0029 13 1 1.5527 8.3427 1.2107 14 1 1.5537 8.3422 -1.2142 15 6 2.2423 -1.2734 0.0006 16 6 1.5449 -2.4885 0.0006 17 6 2.2382 -3.6800 0.0006 18 6 3.6218 -3.6816 0.0000 19 6 4.3251 -2.4812 0.0000 20 7 5.7235 -2.4906 0.0000 21 6 6.4039 -1.5196 0.6409 22 8 5.8055 -0.6909 1.2989 23 6 7.8778 -1.4624 0.5439 24 6 8.5684 -2.4159 -0.2061 25 6 9.9435 -2.3533 -0.2972 26 6 10.6389 -1.3552 0.3620 27 6 9.9609 -0.4105 1.1116 28 6 8.5854 -0.4578 1.2060 29 6 3.6409 -1.2769 -0.0049 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 0.4887 2.3431 -0.0005 34 1 3.9194 6.7861 -0.0002 35 1 0.4649 -2.4916 0.0009 36 1 1.6991 -4.6158 0.0010 37 1 4.1583 -4.6190 0.0005 38 1 6.2038 -3.1958 -0.4613 39 1 8.0271 -3.1983 -0.7172 40 1 10.4787 -3.0876 -0.8812 41 1 11.7158 -1.3137 0.2913 42 1 10.5096 0.3663 1.6234 43 1 8.0574 0.2800 1.7918 44 1 4.1854 -0.3442 -0.0091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408719443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:48 Heat of formation + Delta-G solvation = -1.360766 kcal Electronic energy + Delta-G solvation = -28954.266898 eV Core-core repulsion = 24836.380884 eV Total energy + Delta-G solvation = -4117.886014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.85331 -40.28642 -39.69169 -39.06838 -37.58248 -35.98804 -34.81396 -33.62943 -32.60467 -31.95005 -31.13465 -30.61623 -29.35014 -28.25807 -25.44633 -24.63599 -23.69528 -23.17768 -22.29946 -21.38215 -20.59476 -19.88506 -19.09358 -18.03789 -17.62702 -17.44304 -17.20990 -16.93789 -16.36826 -16.18244 -15.98948 -15.63948 -15.53785 -15.22263 -15.12266 -14.85200 -14.67082 -14.52082 -14.40936 -14.31830 -13.78882 -13.52676 -13.35512 -13.13343 -12.92074 -12.80799 -12.70205 -12.50381 -12.42097 -12.28290 -12.10074 -12.00352 -11.54552 -11.10945 -11.05041 -10.86189 -10.20936 -10.06078 -10.03572 -10.02241 -9.26126 -8.88410 -8.46316 -7.14148 -0.32205 -0.05373 0.34297 0.45555 1.32584 1.34711 1.48487 1.56268 1.77874 1.90329 2.05228 2.33698 2.38733 2.80295 2.97189 3.42971 3.59464 3.64861 3.82831 3.94501 4.01071 4.14485 4.17556 4.22085 4.31923 4.39416 4.42973 4.45712 4.56662 4.64387 4.68029 4.78431 4.91995 4.98780 5.09831 5.13359 5.23205 5.25903 5.34643 5.38963 5.42067 5.44472 5.53428 5.67759 5.76411 5.88766 5.99098 6.06526 6.32557 6.62726 6.94109 7.02199 7.42974 8.38679 8.55399 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.002933 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.363302 B = 9543.189030 C =12834.726057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 N -0.271 5.271 4 N -0.593 5.593 5 C 0.540 3.460 6 O -0.619 6.619 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.025 3.975 10 N -0.805 5.805 11 Si 1.016 2.984 12 H -0.240 1.240 13 H -0.265 1.265 14 H -0.263 1.263 15 C -0.036 4.036 16 C -0.105 4.105 17 C -0.090 4.090 18 C -0.124 4.124 19 C 0.124 3.876 20 N -0.653 5.653 21 C 0.543 3.457 22 O -0.565 6.565 23 C -0.158 4.158 24 C -0.079 4.079 25 C -0.121 4.121 26 C -0.086 4.086 27 C -0.133 4.133 28 C -0.091 4.091 29 C -0.128 4.128 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.383 0.617 34 H 0.281 0.719 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.429 0.571 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.144 0.856 43 H 0.101 0.899 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 -25.754 -2.554 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 N -0.080 5.080 4 N -0.339 5.339 5 C 0.349 3.651 6 O -0.505 6.505 7 C -0.597 4.597 8 H 0.115 0.885 9 C -0.193 4.193 10 N -0.433 5.433 11 Si 0.833 3.167 12 H -0.163 1.163 13 H -0.189 1.189 14 H -0.188 1.188 15 C -0.039 4.039 16 C -0.125 4.125 17 C -0.108 4.108 18 C -0.145 4.145 19 C 0.030 3.970 20 N -0.300 5.300 21 C 0.333 3.667 22 O -0.444 6.444 23 C -0.162 4.162 24 C -0.098 4.098 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.151 4.151 28 C -0.110 4.110 29 C -0.150 4.150 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.223 0.777 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.186 0.814 38 H 0.270 0.730 39 H 0.177 0.823 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.162 0.838 43 H 0.119 0.881 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.369 -24.441 -2.107 25.345 hybrid contribution -0.995 1.170 0.129 1.541 sum 5.374 -23.271 -1.978 23.965 Atomic orbital electron populations 1.21262 0.89049 1.04987 1.04421 1.23831 0.95893 0.90917 1.00769 1.75096 1.28364 0.93323 1.11191 1.47307 1.07819 1.01719 1.77080 1.17438 0.87407 0.82410 0.77814 1.90655 1.16170 1.86847 1.56786 1.20404 0.95702 0.89767 1.53804 0.88482 1.27287 0.95587 1.05658 0.90725 1.70218 1.10224 1.29736 1.33073 0.84733 0.79317 0.73781 0.78906 1.16256 1.18921 1.18752 1.18465 0.91501 0.91582 1.02367 1.21669 1.01637 0.89748 0.99466 1.21373 0.92989 0.98921 0.97496 1.21449 0.95308 0.95812 1.01893 1.17821 0.82769 0.94114 1.02277 1.43154 1.04491 1.28929 1.53422 1.19089 0.88758 0.80551 0.78279 1.90910 1.71196 1.40571 1.41676 1.19840 0.90615 1.00762 1.04936 1.21646 0.95802 0.96664 0.95653 1.21619 0.93228 0.99450 0.99576 1.21868 1.02070 0.92786 0.93612 1.21420 0.92594 1.00698 1.00414 1.21368 0.95760 0.96599 0.97304 1.21298 0.94817 0.97599 1.01321 0.89006 0.92036 0.86237 0.77710 0.90860 0.81853 0.80265 0.81357 0.73009 0.82301 0.81107 0.81908 0.83837 0.88083 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.04 71.24 0.64 -3.16 16 2 C 0.08 3.03 7.11 45.08 0.32 3.35 16 3 N -0.27 -14.75 10.18 -42.82 -0.44 -15.19 16 4 N -0.59 -32.89 6.11 -180.31 -1.10 -34.00 16 5 C 0.54 35.97 7.67 84.92 0.65 36.62 16 6 O -0.62 -48.20 15.21 -5.08 -0.08 -48.28 16 7 C -0.56 -33.94 9.28 23.44 0.22 -33.72 16 8 H 0.10 5.12 7.85 -2.91 -0.02 5.10 16 9 C 0.03 1.48 5.50 85.36 0.47 1.95 16 10 N -0.80 -52.11 11.71 21.87 0.26 -51.85 16 11 Si 1.02 41.86 29.56 68.60 2.03 43.89 16 12 H -0.24 -8.95 7.11 99.48 0.71 -8.25 16 13 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 14 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 15 C -0.04 -1.28 5.87 -20.12 -0.12 -1.40 16 16 C -0.10 -2.30 9.37 22.63 0.21 -2.08 16 17 C -0.09 -1.44 10.02 22.21 0.22 -1.21 16 18 C -0.12 -2.30 9.96 22.51 0.22 -2.07 16 19 C 0.12 3.67 6.27 38.14 0.24 3.91 16 20 N -0.65 -17.07 5.28 -306.22 -1.62 -18.68 16 21 C 0.54 19.12 7.50 86.78 0.65 19.77 16 22 O -0.56 -27.58 14.04 -3.91 -0.05 -27.63 16 23 C -0.16 -4.44 5.87 -20.09 -0.12 -4.56 16 24 C -0.08 -1.34 9.54 22.53 0.21 -1.12 16 25 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 26 C -0.09 -1.23 10.04 22.33 0.22 -1.01 16 27 C -0.13 -2.84 10.03 22.23 0.22 -2.62 16 28 C -0.09 -2.74 9.60 22.53 0.22 -2.53 16 29 C -0.13 -5.19 8.18 22.73 0.19 -5.01 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.78 6.36 -2.39 -0.02 1.77 16 32 H 0.12 2.20 6.46 -2.39 -0.02 2.19 16 33 H 0.38 17.64 6.41 -213.32 -1.37 16.28 16 34 H 0.28 16.18 8.29 -92.71 -0.77 15.42 16 35 H 0.16 2.37 6.35 -2.91 -0.02 2.35 16 36 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 37 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.43 6.47 6.87 -92.71 -0.64 5.83 16 39 H 0.16 1.42 6.42 -2.91 -0.02 1.40 16 40 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 43 H 0.10 3.69 7.65 -2.91 -0.02 3.67 16 44 H 0.09 4.66 5.91 -2.91 -0.02 4.64 16 Total: -1.00 -110.51 381.29 2.98 -107.53 By element: Atomic # 1 Polarization: 41.35 SS G_CDS: -0.92 Total: 40.43 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.90 Total: 3.79 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -2.90 Total: -119.72 kcal Atomic # 8 Polarization: -75.78 SS G_CDS: -0.13 Total: -75.91 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -110.51 2.98 -107.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.165 kcal (2) G-P(sol) polarization free energy of solvation -110.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds