Wall clock time and date at job start Tue Mar 31 2020 05:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.37858 * 119.99724 * 194.67907 * 3 2 1 5 5 C 1.46385 * 119.99975 * 352.18623 * 4 3 2 6 6 C 1.40300 * 120.12405 * 332.56128 * 5 4 3 7 7 C 1.36534 * 119.87614 * 179.73444 * 6 5 4 8 8 C 1.39275 * 120.12357 * 0.51717 * 7 6 5 9 9 O 1.35505 * 119.87947 * 179.73726 * 8 7 6 10 10 C 1.34749 * 117.00028 * 185.56038 * 9 8 7 11 11 H 1.08002 * 120.00171 * 354.95290 * 10 9 8 12 12 C 1.38769 * 119.99895 * 174.94399 * 10 9 8 13 13 N 1.31473 * 120.00184 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99900 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47272 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47131 * 120.00599 * 14 12 10 17 17 H 1.48506 * 109.47051 * 240.00152 * 14 12 10 18 18 C 1.39280 * 120.24724 * 359.75649 * 8 7 6 19 19 C 1.36539 * 120.12005 * 359.97438 * 18 8 7 20 20 C 1.47084 * 120.00087 * 14.40219 * 3 2 1 21 21 O 1.21669 * 120.00101 * 180.02562 * 20 3 2 22 22 N 1.34781 * 120.00335 * 359.97438 * 20 3 2 23 23 C 1.40026 * 119.99751 * 185.02634 * 22 20 3 24 24 C 1.38875 * 120.01296 * 214.18199 * 23 22 20 25 25 C 1.38080 * 119.98154 * 179.79370 * 24 23 22 26 26 C 1.38726 * 120.01897 * 0.46886 * 25 24 23 27 27 O 1.35968 * 119.98758 * 179.76567 * 26 25 24 28 28 C 1.38733 * 120.03265 * 359.78620 * 26 25 24 29 29 C 1.38086 * 120.01713 * 359.97438 * 28 26 25 30 30 H 1.07995 * 120.00019 * 172.19299 * 4 3 2 31 31 H 1.08004 * 120.06098 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.94394 * 180.25467 * 7 6 5 33 33 H 0.96995 * 119.99828 * 179.97438 * 13 12 10 34 34 H 1.07997 * 119.94063 * 179.97438 * 18 8 7 35 35 H 1.08002 * 120.06000 * 180.02562 * 19 18 8 36 36 H 0.96997 * 119.99408 * 5.02448 * 22 20 3 37 37 H 1.07997 * 120.00808 * 0.02562 * 24 23 22 38 38 H 1.07997 * 119.99418 * 180.22913 * 25 24 23 39 39 H 0.96697 * 114.00198 * 270.01955 * 27 26 25 40 40 H 1.07999 * 119.99045 * 179.97438 * 28 26 25 41 41 H 1.07988 * 120.01030 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2568 1.1559 0.3025 5 6 2.5344 2.4199 0.4556 6 6 1.3246 2.6263 -0.2243 7 6 0.6523 3.8050 -0.0737 8 6 1.1708 4.8057 0.7446 9 8 0.5021 5.9757 0.8863 10 6 1.1100 6.9455 1.5975 11 1 2.0487 6.7446 2.0924 12 6 0.5300 8.2025 1.6938 13 7 -0.6128 8.4471 1.0916 14 14 1.3731 9.5471 2.6790 15 1 2.6373 9.0211 3.2538 16 1 1.6751 10.6973 1.7895 17 1 0.4773 9.9922 3.7766 18 6 2.3742 4.6086 1.4174 19 6 3.0521 3.4316 1.2783 20 6 3.3041 -1.2328 -0.3168 21 8 4.5207 -1.2323 -0.3164 22 7 2.6308 -2.3638 -0.6067 23 6 3.3276 -3.5621 -0.8048 24 6 2.8646 -4.4904 -1.7281 25 6 3.5546 -5.6700 -1.9260 26 6 4.7046 -5.9322 -1.1958 27 8 5.3809 -7.0960 -1.3878 28 6 5.1648 -5.0077 -0.2694 29 6 4.4787 -3.8254 -0.0739 30 1 4.3293 1.1284 0.4266 31 1 0.9239 1.8526 -0.8626 32 1 -0.2811 3.9634 -0.5932 33 1 -1.0183 9.3256 1.1592 34 1 2.7719 5.3881 2.0503 35 1 3.9850 3.2795 1.8008 36 1 1.6635 -2.3476 -0.6779 37 1 1.9672 -4.2881 -2.2938 38 1 3.1967 -6.3904 -2.6466 39 1 5.0896 -7.8192 -0.8157 40 1 6.0600 -5.2127 0.2989 41 1 4.8368 -3.1061 0.6475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408799367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:11 Heat of formation + Delta-G solvation = 4.304153 kcal Electronic energy + Delta-G solvation = -27507.229960 eV Core-core repulsion = 23319.182412 eV Total energy + Delta-G solvation = -4188.047548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.81873 -39.62482 -39.26729 -37.65458 -36.95453 -36.24411 -34.42233 -33.39011 -32.58443 -31.29065 -30.71082 -29.56022 -28.17686 -25.98627 -24.29808 -23.34038 -22.75849 -22.16429 -21.16209 -20.86577 -18.79428 -18.66310 -18.44580 -17.83190 -17.21948 -16.05040 -15.76983 -15.46222 -15.23124 -14.97122 -14.91651 -14.74175 -14.33058 -14.32103 -14.09245 -13.90671 -13.70229 -13.32637 -13.12391 -13.06006 -12.95573 -12.58576 -12.45851 -12.31050 -12.20874 -12.00921 -11.76841 -11.30928 -11.25262 -10.87376 -10.85423 -10.66718 -10.47309 -10.11377 -9.75432 -9.59110 -9.27244 -9.07512 -8.62836 -8.25370 -7.36118 -6.88372 -4.38831 0.37500 0.92672 1.07103 2.03189 2.18516 2.59823 2.71426 2.89964 2.92112 2.93002 2.99299 3.36284 3.64904 3.68292 3.95716 4.07074 4.27570 4.53166 4.66528 4.69988 4.72618 4.87339 5.03068 5.13462 5.23381 5.27736 5.32810 5.38165 5.68992 5.73837 5.77938 5.79993 5.90768 6.07262 6.14585 6.18641 6.18847 6.31314 6.58326 6.60692 6.70129 6.93000 6.98644 7.05759 7.13604 7.35462 7.43504 7.57308 7.61312 7.94831 8.54945 9.20126 10.26808 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.035903 B = 0.001637 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.698636 B =17100.537096 C =17735.497463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.263 3.737 3 C -0.217 4.217 4 C 0.133 3.867 5 C -0.237 4.237 6 C -0.032 4.032 7 C -0.197 4.197 8 C 0.174 3.826 9 O -0.147 6.147 10 C -0.390 4.390 11 H 0.103 0.897 12 C 0.043 3.957 13 N -0.838 5.838 14 Si 0.949 3.051 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.272 1.272 18 C -0.245 4.245 19 C -0.014 4.014 20 C 0.586 3.414 21 O -0.525 6.525 22 N -0.676 5.676 23 C 0.148 3.852 24 C -0.132 4.132 25 C -0.125 4.125 26 C 0.082 3.918 27 O -0.500 6.500 28 C -0.124 4.124 29 C -0.103 4.103 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.278 0.722 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.410 0.590 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.387 0.613 40 H 0.132 0.868 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -21.145 -1.227 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.050 4.050 3 C -0.225 4.225 4 C 0.110 3.890 5 C -0.238 4.238 6 C -0.051 4.051 7 C -0.216 4.216 8 C 0.114 3.886 9 O -0.045 6.045 10 C -0.465 4.465 11 H 0.121 0.879 12 C -0.166 4.166 13 N -0.469 5.469 14 Si 0.773 3.227 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.264 4.264 19 C -0.032 4.032 20 C 0.378 3.622 21 O -0.402 6.402 22 N -0.320 5.320 23 C 0.054 3.946 24 C -0.152 4.152 25 C -0.144 4.144 26 C 0.037 3.963 27 O -0.309 6.309 28 C -0.143 4.143 29 C -0.124 4.124 30 H 0.168 0.832 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.247 0.753 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.242 0.758 40 H 0.150 0.850 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.668 -20.433 -1.736 21.893 hybrid contribution -0.029 0.446 0.707 0.836 sum 7.638 -19.987 -1.029 21.421 Atomic orbital electron populations 1.81313 1.11715 1.07668 1.10496 1.25394 0.92538 0.93477 0.93550 1.17539 0.84756 0.95357 1.24835 1.23063 0.99407 0.88822 0.77717 1.18405 0.99728 0.95363 1.10313 1.20918 0.92133 0.95724 0.96285 1.19900 1.03010 0.93942 1.04732 1.19720 0.90099 0.87161 0.91582 1.83865 1.41383 1.18403 1.60854 1.21705 1.07067 0.89044 1.28637 0.87922 1.25529 0.96062 0.97755 0.97240 1.70004 1.15495 1.23488 1.37867 0.85507 0.79146 0.79253 0.78825 1.18595 1.19643 1.19675 1.20869 0.98337 0.99670 1.07526 1.20761 0.97302 0.91220 0.93965 1.17674 0.86873 0.82052 0.75648 1.90825 1.12673 1.84804 1.51933 1.43457 1.10747 1.06837 1.71008 1.17757 0.94620 0.86365 0.95854 1.20801 1.01843 0.94649 0.97930 1.21172 0.94530 0.97951 1.00723 1.18445 0.92335 0.88242 0.97232 1.84863 1.61468 1.20094 1.64506 1.21324 1.00540 0.94195 0.98238 1.21087 0.95024 0.96840 0.99402 0.83197 0.86364 0.85977 0.91151 0.84757 0.86177 0.75345 0.85202 0.85107 0.75778 0.85037 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.88 17.84 41.84 0.75 -6.14 16 2 C 0.26 3.71 10.46 -22.47 -0.23 3.47 16 3 C -0.22 -2.76 5.84 -104.52 -0.61 -3.37 16 4 C 0.13 1.68 9.46 -36.44 -0.34 1.34 16 5 C -0.24 -3.67 5.62 -105.07 -0.59 -4.26 16 6 C -0.03 -0.55 8.28 -39.42 -0.33 -0.87 16 7 C -0.20 -3.92 9.93 -39.81 -0.40 -4.31 16 8 C 0.17 3.79 6.66 -38.81 -0.26 3.54 16 9 O -0.15 -3.80 9.74 1.03 0.01 -3.79 16 10 C -0.39 -9.74 9.48 30.93 0.29 -9.45 16 11 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 12 C 0.04 1.05 5.50 -17.51 -0.10 0.96 16 13 N -0.84 -22.34 13.67 55.49 0.76 -21.58 16 14 Si 0.95 18.31 29.55 -169.99 -5.02 13.29 16 15 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 18 C -0.24 -4.63 9.10 -39.81 -0.36 -4.99 16 19 C -0.01 -0.22 9.75 -39.42 -0.38 -0.60 16 20 C 0.59 7.32 7.48 -12.67 -0.09 7.22 16 21 O -0.52 -7.56 14.05 5.22 0.07 -7.48 16 22 N -0.68 -7.23 5.29 -10.89 -0.06 -7.28 16 23 C 0.15 1.57 6.26 -83.64 -0.52 1.05 16 24 C -0.13 -1.17 9.96 -39.40 -0.39 -1.56 16 25 C -0.12 -1.05 9.98 -39.46 -0.39 -1.45 16 26 C 0.08 0.74 6.70 -39.22 -0.26 0.48 16 27 O -0.50 -3.91 13.50 -19.64 -0.27 -4.17 16 28 C -0.12 -1.17 9.98 -39.45 -0.39 -1.56 16 29 C -0.10 -1.11 8.65 -39.40 -0.34 -1.45 16 30 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 31 H 0.12 1.94 5.15 -52.48 -0.27 1.67 16 32 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.13 2.48 5.61 -52.49 -0.29 2.18 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.41 3.80 7.71 -40.82 -0.31 3.49 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.39 1.10 9.06 45.56 0.41 1.51 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.14 1.61 6.48 -52.49 -0.34 1.27 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -30.42 369.46 -6.63 -37.05 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.73 Total: 10.36 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -5.71 Total: -15.83 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 1.45 Total: -35.00 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.18 Total: -15.44 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.42 -6.63 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408799367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.354 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds