Wall clock time and date at job start Tue Mar 31 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48506 * 109.47319 * 270.00097 * 3 2 1 5 5 H 1.48500 * 109.47298 * 30.00128 * 3 2 1 6 6 H 1.48504 * 109.47121 * 150.00283 * 3 2 1 7 7 C 1.38696 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00248 * 179.97438 * 7 2 1 9 9 O 1.34768 * 119.99999 * 0.02562 * 7 2 1 10 10 C 1.35530 * 117.00020 * 185.45106 * 9 7 2 11 11 C 1.38746 * 120.16913 * 5.75866 * 10 9 7 12 12 C 1.38064 * 120.11641 * 179.97438 * 11 10 9 13 13 C 1.38717 * 120.45663 * 359.97438 * 12 11 10 14 14 Br 1.89100 * 119.83007 * 179.97438 * 13 12 11 15 15 C 1.37833 * 120.33640 * 359.97438 * 13 12 11 16 16 C 1.39972 * 119.87672 * 0.02562 * 15 13 12 17 17 C 1.46735 * 120.22286 * 180.25654 * 16 15 13 18 18 C 1.35761 * 120.00195 * 41.53801 * 17 16 15 19 19 N 1.40119 * 127.40078 * 187.25922 * 18 17 16 20 20 C 1.34477 * 107.76478 * 179.89842 * 19 18 17 21 21 O 1.21604 * 124.48588 * 180.17503 * 20 19 18 22 22 N 1.34187 * 111.02931 * 0.38969 * 20 19 18 23 23 C 1.34838 * 109.83746 * 359.75891 * 22 20 19 24 24 O 1.21709 * 126.91931 * 179.97438 * 23 22 20 25 25 H 0.97002 * 120.00152 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.94371 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.77743 * 179.97438 * 12 11 10 28 28 H 1.08010 * 120.05771 * 180.02562 * 15 13 12 29 29 H 1.07999 * 119.99443 * 221.54233 * 17 16 15 30 30 H 0.97007 * 126.12068 * 0.02562 * 19 18 17 31 31 H 0.97000 * 125.08190 * 179.71890 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0086 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0682 -3.5022 0.1158 11 6 3.4343 -3.4285 0.3466 12 6 4.1803 -4.5843 0.4644 13 6 3.5737 -5.8270 0.3540 14 35 4.6125 -7.3986 0.5175 15 6 2.2177 -5.9220 0.1259 16 6 1.4480 -4.7592 0.0042 17 6 0.0029 -4.8515 -0.2332 18 6 -0.7366 -5.7755 0.4320 19 7 -2.0857 -6.0937 0.2271 20 6 -2.4155 -7.0633 1.0986 21 8 -3.5183 -7.5693 1.1807 22 7 -1.3680 -7.3952 1.8688 23 6 -0.2955 -6.6530 1.5271 24 8 0.8143 -6.6993 2.0248 25 1 -0.4850 0.8401 0.0004 26 1 3.9151 -2.4654 0.4343 27 1 5.2434 -4.5206 0.6436 28 1 1.7500 -6.8918 0.0412 29 1 -0.4723 -4.1844 -0.9371 30 1 -2.6757 -5.6885 -0.4277 31 1 -1.3807 -8.0680 2.5674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409041059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:42 Heat of formation + Delta-G solvation = -20.333184 kcal Electronic energy + Delta-G solvation = -22135.194569 eV Core-core repulsion = 18430.240463 eV Total energy + Delta-G solvation = -3704.954106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 351.989 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37748 -39.47567 -38.37412 -36.81300 -36.28152 -34.34772 -32.78034 -32.25846 -30.94322 -28.73785 -27.84523 -25.59341 -24.62771 -22.78599 -22.36154 -21.34980 -19.74837 -18.39397 -18.09585 -17.25754 -16.61129 -16.55713 -15.68236 -15.64682 -15.00283 -14.88675 -14.54192 -14.20923 -14.03218 -13.74654 -13.55534 -12.97705 -12.72846 -12.17258 -11.99467 -11.70143 -11.31272 -11.21527 -11.04046 -10.88450 -10.64507 -10.32129 -10.24378 -9.97891 -9.91861 -9.68483 -9.06456 -8.95101 -7.90085 -7.30185 -6.79014 -4.34686 0.65155 1.90090 2.01042 2.24825 2.56097 2.89802 2.96502 2.97864 3.02861 3.09971 3.31652 3.70992 4.19272 4.35049 4.76132 4.85642 5.20803 5.42852 5.44162 5.54697 5.79005 5.95695 6.08985 6.18214 6.25569 6.45068 6.65075 6.74000 6.77416 6.94002 7.01446 7.07106 7.35185 7.64560 7.64821 8.16010 8.65621 9.27045 10.36743 Molecular weight = 351.99amu Principal moments of inertia in cm(-1) A = 0.007782 B = 0.005033 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3597.000168 B = 5562.235447 C = 8903.700132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.394 4.394 8 H 0.099 0.901 9 O -0.152 6.152 10 C 0.186 3.814 11 C -0.230 4.230 12 C -0.025 4.025 13 C -0.182 4.182 14 Br -0.085 7.085 15 C 0.026 3.974 16 C -0.171 4.171 17 C 0.048 3.952 18 C -0.046 4.046 19 N -0.655 5.655 20 C 0.704 3.296 21 O -0.550 6.550 22 N -0.680 5.680 23 C 0.555 3.445 24 O -0.456 6.456 25 H 0.276 0.724 26 H 0.139 0.861 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.146 0.854 30 H 0.437 0.563 31 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -9.713 -0.727 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.052 6.052 10 C 0.128 3.872 11 C -0.250 4.250 12 C -0.045 4.045 13 C -0.261 4.261 14 Br 0.000 7.000 15 C 0.006 3.994 16 C -0.174 4.174 17 C 0.025 3.975 18 C -0.144 4.144 19 N -0.309 5.309 20 C 0.404 3.596 21 O -0.425 6.425 22 N -0.351 5.351 23 C 0.345 3.655 24 O -0.327 6.327 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.164 0.836 30 H 0.280 0.720 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.905 -10.325 -0.383 11.045 hybrid contribution -0.121 1.128 0.110 1.140 sum 3.784 -9.197 -0.273 9.949 Atomic orbital electron populations 1.69992 1.06146 1.28558 1.43171 1.25391 0.95926 0.99181 0.95712 0.85639 0.79076 0.79374 0.79052 1.19519 1.19999 1.18848 1.21484 0.92186 0.80303 1.52956 0.88367 1.83874 1.34853 1.11719 1.74738 1.19414 0.90169 0.86744 0.90832 1.21061 0.93782 0.98864 1.11246 1.20825 0.99060 0.90426 0.94167 1.20882 0.94265 0.90627 1.20345 1.96496 1.70801 1.34914 1.97838 1.20692 0.91179 0.96558 0.90973 1.17465 0.91453 0.90632 1.17892 1.21443 0.91968 0.90807 0.93310 1.19996 0.85059 1.06046 1.03253 1.43027 1.11241 1.38532 1.38078 1.15811 0.83794 0.80388 0.79633 1.91049 1.20854 1.58469 1.72094 1.44289 1.12757 1.40435 1.37616 1.18399 0.83869 0.80056 0.83196 1.91006 1.19308 1.65358 1.57008 0.91399 0.84321 0.86195 0.86075 0.83636 0.72023 0.72537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.99 13.67 55.48 0.76 -21.23 16 2 C 0.05 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 18.30 29.55 -169.99 -5.02 13.27 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.39 -9.59 9.44 30.90 0.29 -9.30 16 8 H 0.10 2.19 5.30 -52.49 -0.28 1.91 16 9 O -0.15 -3.69 9.21 0.90 0.01 -3.69 16 10 C 0.19 3.91 6.67 -38.50 -0.26 3.65 16 11 C -0.23 -4.40 9.12 -39.46 -0.36 -4.76 16 12 C -0.02 -0.42 9.77 -39.47 -0.39 -0.81 16 13 C -0.18 -3.12 6.22 -39.55 -0.25 -3.36 16 14 Br -0.08 -1.26 33.69 -68.01 -2.29 -3.55 16 15 C 0.03 0.45 6.76 -39.08 -0.26 0.19 16 16 C -0.17 -3.18 5.35 -104.92 -0.56 -3.74 16 17 C 0.05 0.79 9.42 -37.04 -0.35 0.44 16 18 C -0.05 -0.69 6.87 -81.36 -0.56 -1.25 16 19 N -0.66 -8.43 6.22 -12.95 -0.08 -8.51 16 20 C 0.70 9.93 9.08 -87.71 -0.80 9.13 16 21 O -0.55 -9.10 18.05 5.27 0.10 -9.00 16 22 N -0.68 -8.73 5.85 -17.02 -0.10 -8.83 16 23 C 0.56 8.49 7.76 -12.64 -0.10 8.39 16 24 O -0.46 -8.04 14.31 5.18 0.07 -7.97 16 25 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 26 H 0.14 2.59 5.71 -52.49 -0.30 2.29 16 27 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.12 1.99 6.61 -52.48 -0.35 1.65 16 29 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.44 4.54 8.96 -40.82 -0.37 4.18 16 31 H 0.43 4.39 8.96 -40.82 -0.37 4.03 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -28.70 303.78 -7.30 -36.00 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -1.64 Total: 9.34 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.68 Total: -0.41 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.58 Total: -38.57 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.18 Total: -20.65 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.29 Total: -3.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.70 -7.30 -36.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409041059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.665 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds