Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29540 * 1 3 3 Si 1.86802 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47146 * 270.96186 * 3 2 1 5 5 H 1.48501 * 109.47111 * 30.96396 * 3 2 1 6 6 H 1.48504 * 109.47208 * 150.96318 * 3 2 1 7 7 C 1.46350 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99728 * 345.59479 * 7 2 1 9 9 N 1.34034 * 119.99892 * 165.59664 * 7 2 1 10 10 C 1.35633 * 124.74054 * 335.70763 * 9 7 2 11 11 C 1.39799 * 109.19042 * 180.02562 * 10 9 7 12 12 C 1.40746 * 126.90620 * 180.02562 * 11 10 9 13 13 N 1.31998 * 120.00280 * 179.97438 * 12 11 10 14 14 N 1.28997 * 120.00169 * 179.97438 * 13 12 11 15 15 C 1.38369 * 120.00075 * 180.02562 * 14 13 12 16 16 N 1.32658 * 119.71662 * 351.04556 * 15 14 13 17 17 C 1.31704 * 121.61739 * 179.75118 * 16 15 14 18 18 C 1.38440 * 120.88446 * 0.52670 * 17 16 15 19 19 C 1.38796 * 119.35275 * 359.73969 * 18 17 16 20 20 C 1.38386 * 118.50425 * 0.02562 * 19 18 17 21 21 N 1.48100 * 120.46092 * 179.97438 * 20 19 18 22 22 O 1.31700 * 119.99920 * 144.12432 * 21 20 19 23 23 O 1.31698 * 119.99910 * 324.12178 * 21 20 19 24 24 C 1.47770 * 106.18568 * 0.02562 * 11 10 9 25 25 C 1.39156 * 133.65384 * 179.97438 * 24 11 10 26 26 C 1.38175 * 119.68496 * 179.97438 * 25 24 11 27 27 C 1.38429 * 120.18115 * 0.02562 * 26 25 24 28 28 C 1.38356 * 120.58146 * 0.24360 * 27 26 25 29 29 C 1.38685 * 120.01000 * 359.50924 * 28 27 26 30 30 H 0.97001 * 120.00594 * 0.02562 * 1 2 3 31 31 H 1.07999 * 125.40445 * 0.04089 * 10 9 7 32 32 H 1.08001 * 119.99899 * 359.97438 * 12 11 10 33 33 H 0.96997 * 120.00082 * 0.02562 * 14 13 12 34 34 H 1.08001 * 119.55625 * 180.29088 * 17 16 15 35 35 H 1.08004 * 120.31937 * 179.72221 * 18 17 16 36 36 H 1.08004 * 120.74633 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.15577 * 359.97438 * 25 24 11 38 38 H 1.07998 * 119.91407 * 180.02562 * 26 25 24 39 39 H 1.08004 * 119.71151 * 180.02562 * 27 26 25 40 40 H 1.08004 * 119.99614 * 179.70194 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2954 0.0000 0.0000 3 14 2.2293 1.6178 0.0000 4 1 2.4564 2.0583 -1.3999 5 1 1.4370 2.6467 0.7203 6 1 3.5369 1.4346 0.6796 7 6 2.0272 -1.2674 0.0006 8 1 1.5127 -2.1879 0.2337 9 7 3.3360 -1.2856 -0.2882 10 6 3.9780 -0.3456 -1.0255 11 6 5.3308 -0.6839 -1.1242 12 6 6.3338 0.0326 -1.8036 13 7 7.5759 -0.4141 -1.8083 14 7 8.4951 0.2423 -2.4314 15 6 9.7970 -0.2262 -2.4368 16 7 10.1319 -1.2465 -1.6579 17 6 11.3586 -1.7256 -1.6370 18 6 12.3520 -1.1701 -2.4251 19 6 12.0453 -0.0975 -3.2508 20 6 10.7471 0.3819 -3.2559 21 7 10.3722 1.5248 -4.1200 22 8 9.1828 1.5613 -4.6844 23 8 11.2282 2.5047 -4.3239 24 6 5.4960 -1.9449 -0.3717 25 6 6.5852 -2.7691 -0.1058 26 6 6.4100 -3.9116 0.6514 27 6 5.1570 -4.2354 1.1428 28 6 4.0667 -3.4255 0.8794 29 6 4.2253 -2.2723 0.1255 30 1 -0.4851 0.8400 -0.0004 31 1 3.5173 0.5261 -1.4663 32 1 6.0872 0.9479 -2.3212 33 1 8.2736 1.0643 -2.8963 34 1 11.5935 -2.5606 -0.9935 35 1 13.3559 -1.5674 -2.3974 36 1 12.8029 0.3533 -3.8747 37 1 7.5628 -2.5171 -0.4894 38 1 7.2528 -4.5537 0.8604 39 1 5.0287 -5.1300 1.7342 40 1 3.0924 -3.6897 1.2635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409090413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = 181.656675 kcal Electronic energy + Delta-G solvation = -29171.764498 eV Core-core repulsion = 24958.274373 eV Total energy + Delta-G solvation = -4213.490125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.112 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -41.16934 -40.54558 -38.63206 -38.30315 -36.47452 -34.55440 -33.99953 -33.26044 -33.09870 -31.63972 -29.51961 -29.31690 -28.03914 -26.84839 -25.43043 -23.89132 -23.06486 -22.29628 -21.81009 -20.70112 -19.82897 -18.76888 -18.34063 -18.21473 -17.89965 -17.19219 -16.21855 -16.13666 -15.84548 -15.68362 -15.33006 -14.91853 -14.76637 -14.39686 -14.08335 -13.89163 -13.41788 -13.18844 -13.09354 -12.99672 -12.83540 -12.52235 -12.01950 -11.61057 -11.50412 -11.33105 -11.28386 -10.88187 -10.80591 -10.77416 -10.66066 -10.46261 -10.29836 -10.23961 -9.97420 -9.63176 -9.38176 -9.04504 -7.91608 -7.59243 -7.40837 -6.61084 -4.51364 -0.74134 0.61081 0.81421 1.01149 1.66001 2.21691 2.53657 2.60134 2.73841 2.83373 2.91129 3.27612 3.49652 3.80367 3.86270 4.03014 4.12385 4.36783 4.39538 4.43980 4.79971 4.83848 5.14162 5.22502 5.42383 5.56055 5.56928 5.65161 5.66765 5.78154 5.89832 5.97924 6.20797 6.30902 6.40632 6.52722 6.61539 6.62133 6.75757 6.92592 7.01665 7.21355 7.31695 7.42327 7.49166 7.58936 7.66130 7.83170 8.39186 8.81335 8.94337 9.61434 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003093 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.059222 B = 9050.526065 C =11107.612156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.079 3.921 3 Si 0.891 3.109 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.362 4.362 8 H 0.129 0.871 9 N -0.223 5.223 10 C 0.008 3.992 11 C -0.229 4.229 12 C 0.179 3.821 13 N -0.326 5.326 14 N -0.469 5.469 15 C 0.467 3.533 16 N -0.484 5.484 17 C 0.204 3.796 18 C -0.240 4.240 19 C 0.028 3.972 20 C -0.134 4.134 21 N 0.001 4.999 22 O -0.208 6.208 23 O -0.174 6.174 24 C -0.041 4.041 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.089 4.089 29 C 0.025 3.975 30 H 0.300 0.700 31 H 0.157 0.843 32 H 0.098 0.902 33 H 0.386 0.614 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.305 -1.724 -1.389 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.145 4.145 3 Si 0.715 3.285 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.161 1.161 7 C -0.493 4.493 8 H 0.146 0.854 9 N 0.122 4.878 10 C -0.140 4.140 11 C -0.241 4.241 12 C -0.013 4.013 13 N -0.145 5.145 14 N -0.187 5.187 15 C 0.226 3.774 16 N -0.200 5.200 17 C 0.038 3.962 18 C -0.263 4.263 19 C 0.001 3.999 20 C -0.232 4.232 21 N 0.470 4.530 22 O -0.388 6.388 23 O -0.367 6.367 24 C -0.046 4.046 25 C -0.103 4.103 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.108 4.108 29 C -0.079 4.079 30 H 0.113 0.887 31 H 0.174 0.826 32 H 0.115 0.885 33 H 0.231 0.769 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.174 0.826 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.597 -3.112 -0.162 15.905 hybrid contribution -0.058 2.664 -1.358 2.990 sum 15.539 -0.448 -1.520 15.620 Atomic orbital electron populations 1.68725 1.08055 1.31526 1.31973 1.27024 0.95190 0.99829 0.92418 0.86591 0.81627 0.80022 0.80269 1.18334 1.20221 1.16069 1.20685 0.81337 0.96762 1.50534 0.85356 1.39264 1.06371 1.14419 1.27748 1.22362 0.92311 0.97847 1.01445 1.17051 0.91241 1.00273 1.15507 1.22167 0.89045 0.95356 0.94730 1.72320 0.98186 1.23588 1.20398 1.42856 1.04329 1.23424 1.48140 1.17503 0.83108 0.88626 0.88186 1.67860 1.20496 1.11203 1.20461 1.23216 0.86315 0.94885 0.91833 1.21991 1.02496 0.99945 1.01898 1.21151 0.91910 0.92620 0.94187 1.20673 0.97711 0.98150 1.06656 1.50264 1.02217 1.01839 0.98688 1.96239 1.03844 1.87354 1.51332 1.96253 1.45170 1.26963 1.68360 1.18737 0.91957 0.94781 0.99106 1.20683 0.98193 0.93431 0.97975 1.20792 0.96619 0.97935 1.00937 1.20581 0.92654 0.99889 1.03527 1.20058 0.98824 0.92960 0.98980 1.18446 0.88972 0.95272 1.05204 0.88715 0.82629 0.88488 0.76894 0.80523 0.82834 0.82610 0.85075 0.87257 0.87035 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.06 13.89 55.97 0.78 -17.28 16 2 C 0.08 1.80 5.65 -15.26 -0.09 1.71 16 3 Si 0.89 17.50 24.74 -169.99 -4.21 13.29 16 4 H -0.26 -4.75 6.72 56.52 0.38 -4.37 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.24 -4.88 6.71 56.52 0.38 -4.50 16 7 C -0.36 -8.63 10.53 -13.33 -0.14 -8.77 16 8 H 0.13 3.17 8.06 -52.49 -0.42 2.74 16 9 N -0.22 -5.12 2.70 -57.10 -0.15 -5.28 16 10 C 0.01 0.18 8.43 -15.29 -0.13 0.05 16 11 C -0.23 -4.84 6.15 -104.47 -0.64 -5.48 16 12 C 0.18 3.36 10.65 -16.53 -0.18 3.19 16 13 N -0.33 -6.09 9.15 31.01 0.28 -5.81 16 14 N -0.47 -7.86 5.75 31.10 0.18 -7.68 16 15 C 0.47 7.03 7.51 -155.31 -1.17 5.86 16 16 N -0.48 -6.72 9.89 -12.42 -0.12 -6.84 16 17 C 0.20 1.81 11.18 -17.53 -0.20 1.62 16 18 C -0.24 -1.70 10.12 -39.30 -0.40 -2.10 16 19 C 0.03 0.26 9.82 -39.32 -0.39 -0.12 16 20 C -0.13 -1.79 6.63 -79.41 -0.53 -2.32 16 21 N 0.00 0.01 4.79 34.22 0.16 0.17 16 22 O -0.21 -3.49 17.44 -31.57 -0.55 -4.04 16 23 O -0.17 -2.67 19.72 -31.57 -0.62 -3.30 16 24 C -0.04 -0.88 6.22 -104.87 -0.65 -1.54 16 25 C -0.08 -1.64 9.76 -39.26 -0.38 -2.02 16 26 C -0.14 -2.48 10.04 -39.53 -0.40 -2.87 16 27 C -0.15 -2.53 10.03 -39.47 -0.40 -2.92 16 28 C -0.09 -1.75 9.90 -39.37 -0.39 -2.14 16 29 C 0.03 0.56 6.70 -83.60 -0.56 0.00 16 30 H 0.30 6.22 8.27 -40.82 -0.34 5.88 16 31 H 0.16 3.11 4.35 -52.49 -0.23 2.89 16 32 H 0.10 1.57 7.95 -52.49 -0.42 1.15 16 33 H 0.39 6.17 5.99 -190.12 -1.14 5.04 16 34 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.16 1.10 8.05 -52.48 -0.42 0.68 16 37 H 0.13 2.53 7.10 -52.49 -0.37 2.16 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -28.07 357.96 -9.78 -37.85 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.29 Total: 11.35 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -6.62 Total: -17.85 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.13 Total: -42.71 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -1.17 Total: -7.34 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -4.21 Total: 13.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.07 -9.78 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409090413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.508 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds