Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86795 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47315 * 269.99750 * 3 2 1 5 5 H 1.48504 * 109.47218 * 29.99897 * 3 2 1 6 6 H 1.48497 * 109.47163 * 149.99586 * 3 2 1 7 7 C 1.38654 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99941 * 0.02562 * 7 2 1 9 9 O 1.34824 * 120.00298 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00308 * 185.17639 * 9 7 2 11 11 C 1.38877 * 120.06793 * 5.45773 * 10 9 7 12 12 C 1.38106 * 119.93012 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06931 * 359.97438 * 12 11 10 14 14 C 1.50694 * 119.92846 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.98985 * 327.20540 * 14 13 12 16 16 N 1.47359 * 108.28559 * 204.95480 * 14 13 12 17 17 C 1.39488 * 117.35814 * 278.96280 * 16 14 13 18 18 C 1.39821 * 117.53930 * 177.32682 * 17 16 14 19 19 F 1.35095 * 119.61747 * 358.25317 * 18 17 16 20 20 C 1.37851 * 120.77119 * 178.23452 * 18 17 16 21 21 C 1.38336 * 120.21521 * 0.04766 * 20 18 17 22 22 C 1.38165 * 119.64214 * 0.33444 * 21 20 18 23 23 C 1.37976 * 120.54017 * 359.91835 * 22 21 20 24 24 C 1.47928 * 121.71972 * 179.32476 * 23 22 21 25 25 H 1.09003 * 107.61212 * 262.39085 * 24 23 22 26 26 C 1.48349 * 122.64427 * 28.73257 * 24 23 22 27 27 C 1.32857 * 108.52996 * 148.19904 * 26 24 23 28 28 C 1.53087 * 109.92601 * 358.48312 * 27 26 24 29 29 C 1.51460 * 109.93176 * 88.39041 * 14 13 12 30 30 H 1.08996 * 111.43102 * 171.02723 * 29 14 13 31 31 C 1.38302 * 120.13797 * 0.29351 * 13 12 11 32 32 C 1.38100 * 120.06892 * 359.44665 * 31 13 12 33 33 H 0.97004 * 120.00023 * 0.02562 * 1 2 3 34 34 H 1.07995 * 120.03416 * 0.02562 * 11 10 9 35 35 H 1.07996 * 119.96428 * 179.97438 * 12 11 10 36 36 H 1.00893 * 111.20454 * 48.27478 * 16 14 13 37 37 H 1.07994 * 119.89331 * 180.02562 * 20 18 17 38 38 H 1.07996 * 120.18389 * 180.35693 * 21 20 18 39 39 H 1.07994 * 119.72868 * 179.97438 * 22 21 20 40 40 H 1.07994 * 125.73219 * 328.16790 * 26 24 23 41 41 H 1.07997 * 125.03721 * 178.47806 * 27 26 24 42 42 H 1.09004 * 111.02486 * 215.83185 * 28 27 26 43 43 H 1.08997 * 111.02920 * 91.92345 * 28 27 26 44 44 H 1.07996 * 119.96352 * 179.70970 * 31 13 12 45 45 H 1.08001 * 120.03700 * 180.27229 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3570 -1.2009 0.0011 10 6 3.9733 -2.4055 -0.1076 11 6 3.2233 -3.5536 -0.3264 12 6 3.8532 -4.7778 -0.4359 13 6 5.2295 -4.8609 -0.3284 14 6 5.9136 -6.1982 -0.4490 15 1 5.2718 -6.9826 -0.0478 16 7 7.1984 -6.1267 0.2691 17 6 8.2730 -5.5371 -0.3967 18 6 9.4781 -5.4155 0.3017 19 9 9.5511 -5.8317 1.5849 20 6 10.5929 -4.8763 -0.3039 21 6 10.5320 -4.4456 -1.6171 22 6 9.3455 -4.5523 -2.3169 23 6 8.2234 -5.0859 -1.7172 24 6 6.9360 -5.1989 -2.4372 25 1 6.3234 -4.3430 -2.1538 26 6 6.8541 -5.3602 -3.9096 27 6 5.7803 -6.0884 -4.1955 28 6 5.0736 -6.5055 -2.9031 29 6 6.2337 -6.4853 -1.9013 30 1 6.8657 -7.3675 -2.0029 31 6 5.9788 -3.7201 -0.1050 32 6 5.3553 -2.4924 0.0001 33 1 -0.4850 0.8401 -0.0004 34 1 2.1486 -3.4892 -0.4108 35 1 3.2704 -5.6710 -0.6057 36 1 7.0807 -5.7290 1.1889 37 1 11.5167 -4.7894 0.2487 38 1 11.4072 -4.0285 -2.0928 39 1 9.2963 -4.2161 -3.3420 40 1 7.5501 -4.9536 -4.6283 41 1 5.4543 -6.3477 -5.1919 42 1 4.6522 -7.5067 -2.9934 43 1 4.3055 -5.7832 -2.6267 44 1 7.0529 -3.7890 -0.0168 45 1 5.9413 -1.6013 0.1702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409159040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = 24.361468 kcal Electronic energy + Delta-G solvation = -31077.951049 eV Core-core repulsion = 26941.260473 eV Total energy + Delta-G solvation = -4136.690576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.138 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.80164 -41.68137 -39.12423 -38.05814 -36.96862 -35.41905 -32.52010 -31.78047 -31.18929 -30.27027 -28.80960 -28.54530 -27.16772 -25.50243 -23.94813 -22.54536 -22.31179 -22.07803 -21.14205 -19.19537 -18.80501 -17.99061 -17.55737 -17.36679 -16.90230 -16.41534 -15.86388 -15.54577 -15.17549 -15.10564 -15.04359 -14.59931 -14.28019 -13.98899 -13.86061 -13.72727 -13.36698 -13.10926 -12.76781 -12.64674 -12.45587 -12.28775 -12.13374 -12.08435 -11.92384 -11.75664 -11.63237 -11.30473 -11.18221 -10.97082 -10.81659 -10.75274 -10.40228 -10.26412 -10.00470 -9.52967 -9.02473 -8.90889 -8.59837 -8.38723 -7.73088 -7.41273 -6.51458 -4.18162 1.13739 1.17236 1.93552 1.99731 2.15153 3.15537 3.19524 3.33789 3.44881 3.65857 4.11347 4.15569 4.28398 4.42372 4.60720 4.70932 4.75587 4.78693 4.91828 4.98821 5.01523 5.08713 5.17421 5.29053 5.33288 5.39598 5.49429 5.53688 5.63437 5.73748 5.75767 5.85856 5.89018 5.93067 5.98593 6.00783 6.17927 6.19173 6.28215 6.34914 6.42871 6.45854 6.61172 6.65581 6.81950 6.86533 6.91285 7.11917 7.17227 7.19496 7.45763 7.67722 7.92341 8.83339 9.44319 10.55800 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.012455 B = 0.003303 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.604566 B = 8476.379501 C = 9195.519637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.213 6.213 10 C 0.163 3.837 11 C -0.218 4.218 12 C -0.058 4.058 13 C -0.210 4.210 14 C 0.167 3.833 15 H 0.103 0.897 16 N -0.640 5.640 17 C 0.120 3.880 18 C 0.051 3.949 19 F -0.140 7.140 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.082 4.082 24 C -0.053 4.053 25 H 0.113 0.887 26 C -0.148 4.148 27 C -0.166 4.166 28 C -0.091 4.091 29 C -0.090 4.090 30 H 0.090 0.910 31 C -0.078 4.078 32 C -0.187 4.187 33 H 0.281 0.719 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.371 0.629 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.586 -12.267 -5.291 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.118 6.118 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.077 4.077 13 C -0.212 4.212 14 C 0.060 3.940 15 H 0.121 0.879 16 N -0.266 5.266 17 C 0.018 3.982 18 C 0.029 3.971 19 F -0.119 7.119 20 C -0.152 4.152 21 C -0.147 4.147 22 C -0.115 4.115 23 C -0.086 4.086 24 C -0.071 4.071 25 H 0.130 0.870 26 C -0.165 4.165 27 C -0.184 4.184 28 C -0.128 4.128 29 C -0.109 4.109 30 H 0.108 0.892 31 C -0.096 4.096 32 C -0.207 4.207 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.200 0.800 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.504 -12.505 -5.322 21.380 hybrid contribution -0.037 1.462 0.298 1.492 sum 16.467 -11.043 -5.024 20.454 Atomic orbital electron populations 1.69640 1.05592 1.28665 1.47355 1.24473 0.95029 0.98890 0.95477 0.86191 0.80371 0.81391 0.79046 1.19812 1.20631 1.18338 1.20769 0.76774 0.96684 1.52426 0.87567 1.83588 1.22730 1.25713 1.79735 1.19153 0.91547 0.85666 0.92632 1.21278 1.01224 0.92127 1.09125 1.20569 0.93034 0.96837 0.97282 1.19816 0.94255 0.94615 1.12508 1.20019 0.86391 0.94923 0.92680 0.87936 1.55366 1.06101 1.56971 1.08135 1.18658 0.90507 0.95426 0.93617 1.17439 0.94113 1.05431 0.80116 1.91456 1.96771 1.88491 1.35191 1.20844 0.97358 1.00766 0.96229 1.20804 0.98237 1.01976 0.93721 1.20746 0.91860 0.98820 1.00073 1.18868 0.95956 1.00571 0.93224 1.19531 0.94138 1.00483 0.92920 0.86977 1.22915 0.98730 0.99625 0.95265 1.24279 0.96487 0.99265 0.98386 1.21468 0.97276 1.01956 0.92117 1.22275 0.97654 0.97637 0.93308 0.89156 1.20602 0.98529 0.91706 0.98778 1.20159 0.91983 0.97790 1.10733 0.90907 0.84767 0.86923 0.80039 0.85066 0.85337 0.85630 0.85522 0.85532 0.91148 0.89081 0.87028 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 13.96 55.48 0.77 -23.92 16 2 C 0.07 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.90 21.24 28.62 -169.99 -4.86 16.37 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.70 9.91 30.89 0.31 -10.39 16 8 H 0.11 2.95 5.52 -52.49 -0.29 2.67 16 9 O -0.21 -5.46 8.59 0.07 0.00 -5.45 16 10 C 0.16 3.58 6.65 -39.11 -0.26 3.32 16 11 C -0.22 -4.38 9.14 -39.39 -0.36 -4.74 16 12 C -0.06 -0.94 8.09 -39.61 -0.32 -1.26 16 13 C -0.21 -3.11 3.55 -104.58 -0.37 -3.48 16 14 C 0.17 2.06 3.46 -69.39 -0.24 1.82 16 15 H 0.10 1.16 8.12 -51.93 -0.42 0.74 16 16 N -0.64 -8.08 5.64 -53.10 -0.30 -8.38 16 17 C 0.12 1.54 4.12 -83.26 -0.34 1.20 16 18 C 0.05 0.65 7.24 -39.13 -0.28 0.37 16 19 F -0.14 -1.88 16.70 2.25 0.04 -1.84 16 20 C -0.13 -1.42 9.98 -39.69 -0.40 -1.82 16 21 C -0.13 -1.25 10.07 -39.57 -0.40 -1.65 16 22 C -0.10 -1.04 9.50 -39.70 -0.38 -1.41 16 23 C -0.08 -1.02 4.69 -105.50 -0.49 -1.51 16 24 C -0.05 -0.66 1.85 -93.71 -0.17 -0.84 16 25 H 0.11 1.68 4.81 -51.93 -0.25 1.43 16 26 C -0.15 -1.63 10.18 -37.28 -0.38 -2.01 16 27 C -0.17 -1.77 10.91 -34.97 -0.38 -2.15 16 28 C -0.09 -1.00 6.39 -26.53 -0.17 -1.17 16 29 C -0.09 -1.06 2.61 -89.61 -0.23 -1.29 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 31 C -0.08 -1.26 6.69 -39.61 -0.27 -1.53 16 32 C -0.19 -3.59 9.99 -39.39 -0.39 -3.98 16 33 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.13 2.86 5.71 -52.49 -0.30 2.56 16 35 H 0.11 1.53 7.97 -52.49 -0.42 1.11 16 36 H 0.37 4.70 7.86 -39.30 -0.31 4.39 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 1.13 7.49 -52.49 -0.39 0.74 16 40 H 0.13 1.18 7.74 -52.49 -0.41 0.77 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.14 6.04 -51.93 -0.31 0.82 16 44 H 0.11 1.70 4.75 -52.49 -0.25 1.45 16 45 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -28.41 358.17 -9.61 -38.02 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.02 Total: 10.63 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -5.63 Total: -30.82 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.48 Total: -32.30 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: 0.00 Total: -5.45 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.86 Total: 16.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.41 -9.61 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409159040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.383 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds