Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47358 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47077 * 30.00306 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99730 * 3 2 1 7 7 C 1.38649 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00355 * 179.72444 * 7 2 1 9 9 O 1.34835 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00037 * 174.96383 * 9 7 2 11 11 C 1.38880 * 120.06801 * 185.26531 * 10 9 7 12 12 C 1.38103 * 119.92994 * 179.78820 * 11 10 9 13 13 C 1.38300 * 120.06901 * 0.48872 * 12 11 10 14 14 C 1.50700 * 119.92951 * 179.72067 * 13 12 11 15 15 H 1.09001 * 109.47868 * 160.01607 * 14 13 12 16 16 N 1.46344 * 109.48209 * 39.99469 * 14 13 12 17 17 C 1.39620 * 112.16767 * 182.00649 * 16 14 13 18 18 C 1.39629 * 118.00035 * 206.24999 * 17 16 14 19 19 F 1.35097 * 119.83694 * 0.10753 * 18 17 16 20 20 C 1.38019 * 120.32582 * 180.12813 * 18 17 16 21 21 C 1.38348 * 119.74188 * 0.04922 * 20 18 17 22 22 C 1.37914 * 120.04054 * 359.87504 * 21 20 18 23 23 C 1.38284 * 122.16493 * 26.20700 * 17 16 14 24 24 C 1.50017 * 122.69045 * 359.48056 * 23 17 16 25 25 H 1.09007 * 109.93439 * 130.44808 * 24 23 17 26 26 C 1.51147 * 110.62696 * 252.07554 * 24 23 17 27 27 C 1.30920 * 110.51999 * 140.73646 * 26 24 23 28 28 C 1.51588 * 110.54383 * 0.35143 * 27 26 24 29 29 C 1.53021 * 109.48631 * 280.04501 * 14 13 12 30 30 H 1.09003 * 112.68430 * 58.08989 * 29 14 13 31 31 C 1.38300 * 120.13794 * 359.73919 * 13 12 11 32 32 C 1.38101 * 120.07181 * 0.02583 * 31 13 12 33 33 H 0.96990 * 120.00479 * 0.02562 * 1 2 3 34 34 H 1.08004 * 120.03407 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.96486 * 180.23008 * 12 11 10 36 36 H 1.00898 * 110.99862 * 306.81981 * 16 14 13 37 37 H 1.07998 * 120.13140 * 180.02562 * 20 18 17 38 38 H 1.08003 * 119.97815 * 179.90002 * 21 20 18 39 39 H 1.08002 * 119.64836 * 179.97438 * 22 21 20 40 40 H 1.08008 * 124.74971 * 320.74669 * 26 24 23 41 41 H 1.08006 * 124.73941 * 180.32397 * 27 26 24 42 42 H 1.09005 * 110.60434 * 220.35533 * 28 27 26 43 43 H 1.08998 * 110.60656 * 97.39412 * 28 27 26 44 44 H 1.08003 * 119.96826 * 180.02562 * 31 13 12 45 45 H 1.07999 * 120.03768 * 179.97438 * 32 31 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 -0.0040 9 8 1.3348 -2.3685 0.0005 10 6 2.0702 -3.5046 -0.1051 11 6 1.4369 -4.7351 -0.2217 12 6 2.1878 -5.8887 -0.3334 13 6 3.5690 -5.8205 -0.3191 14 6 4.3854 -7.0819 -0.4348 15 1 5.3960 -6.8325 -0.7581 16 7 3.7663 -7.9757 -1.4144 17 6 4.4547 -9.1846 -1.5334 18 6 4.3612 -9.8758 -2.7430 19 9 3.6220 -9.3667 -3.7527 20 6 5.0201 -11.0767 -2.9121 21 6 5.7754 -11.5970 -1.8763 22 6 5.8705 -10.9154 -0.6812 23 6 5.2139 -9.7042 -0.5010 24 6 5.3685 -9.0101 0.8199 25 1 5.1699 -9.7089 1.6325 26 6 6.7602 -8.4373 0.9607 27 6 6.7173 -7.2652 1.5424 28 6 5.2879 -6.8915 1.8814 29 6 4.4424 -7.7797 0.9258 30 1 3.4539 -8.0239 1.3148 31 6 4.2027 -4.5971 -0.1984 32 6 3.4574 -3.4394 -0.0912 33 1 -0.4850 0.8399 -0.0004 34 1 0.3582 -4.7893 -0.2288 35 1 1.6959 -6.8455 -0.4278 36 1 2.7939 -8.1333 -1.1962 37 1 4.9460 -11.6085 -3.8492 38 1 6.2913 -12.5372 -2.0039 39 1 6.4616 -11.3275 0.1233 40 1 7.6638 -8.9264 0.6278 41 1 7.5801 -6.6503 1.7521 42 1 5.1098 -5.8350 1.6811 43 1 5.0660 -7.1284 2.9220 44 1 5.2815 -4.5470 -0.1879 45 1 3.9528 -2.4844 0.0035 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409159049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = 9.023274 kcal Electronic energy + Delta-G solvation = -30183.339732 eV Core-core repulsion = 26045.984043 eV Total energy + Delta-G solvation = -4137.355689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.138 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -48.76267 -41.28810 -39.04613 -38.11581 -36.78012 -35.34024 -32.43202 -31.85868 -30.94384 -30.26631 -28.75899 -28.13524 -27.32114 -25.56006 -23.98254 -22.51820 -22.44388 -21.97168 -20.77346 -19.45726 -18.85884 -17.99322 -17.50226 -17.22246 -16.77680 -16.46919 -15.94845 -15.66623 -15.25727 -15.05289 -14.68634 -14.46779 -14.35211 -13.68142 -13.61114 -13.53502 -13.29711 -13.03762 -12.96316 -12.79621 -12.49264 -12.39180 -12.16873 -11.86401 -11.76548 -11.69157 -11.38441 -11.37959 -11.22011 -11.10036 -10.81787 -10.64748 -10.44987 -10.32144 -9.72927 -9.36629 -9.05175 -8.84099 -8.81591 -8.21492 -8.08055 -7.20098 -6.47074 -4.05920 0.97556 1.03908 2.09074 2.17502 2.24222 3.11423 3.12824 3.17128 3.35909 3.83098 3.94950 4.15409 4.36745 4.41428 4.50670 4.62630 4.71420 4.83382 4.99783 5.04159 5.06233 5.12903 5.20202 5.23117 5.30202 5.38677 5.45525 5.60396 5.63956 5.70963 5.75176 5.81438 5.86056 5.92136 5.96800 6.09168 6.12092 6.16269 6.23938 6.35153 6.38281 6.59118 6.63716 6.71609 6.84433 6.99836 7.02877 7.17102 7.30670 7.33491 7.41015 7.77008 7.97712 8.98564 9.68137 10.70877 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002542 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.945024 B =11013.714680 C =11964.466692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.189 4.189 12 C -0.063 4.063 13 C -0.173 4.173 14 C 0.159 3.841 15 H 0.088 0.912 16 N -0.625 5.625 17 C 0.086 3.914 18 C 0.097 3.903 19 F -0.130 7.130 20 C -0.148 4.148 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.086 4.086 24 C -0.022 4.022 25 H 0.095 0.905 26 C -0.165 4.165 27 C -0.154 4.154 28 C -0.099 4.099 29 C -0.115 4.115 30 H 0.093 0.907 31 C -0.059 4.059 32 C -0.231 4.231 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.358 0.642 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.848 -21.226 1.157 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.102 3.898 11 C -0.208 4.208 12 C -0.082 4.082 13 C -0.175 4.175 14 C 0.051 3.949 15 H 0.106 0.894 16 N -0.255 5.255 17 C -0.013 4.013 18 C 0.076 3.924 19 F -0.109 7.109 20 C -0.167 4.167 21 C -0.129 4.129 22 C -0.133 4.133 23 C -0.089 4.089 24 C -0.040 4.040 25 H 0.113 0.887 26 C -0.183 4.183 27 C -0.172 4.172 28 C -0.136 4.136 29 C -0.136 4.136 30 H 0.111 0.889 31 C -0.078 4.078 32 C -0.250 4.250 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.187 0.813 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.611 -20.632 0.611 24.189 hybrid contribution 0.255 0.487 0.454 0.713 sum 12.866 -20.145 1.065 23.927 Atomic orbital electron populations 1.70033 1.05969 1.27719 1.45951 1.25289 0.95837 0.98850 0.96516 0.85718 0.78918 0.80085 0.78757 1.19847 1.20248 1.19185 1.21326 0.91790 0.80798 1.52881 0.89043 1.83979 1.34378 1.11474 1.78164 1.19380 0.90275 0.88031 0.92120 1.20154 0.99530 0.90268 1.10871 1.20264 0.92818 0.96502 0.98578 1.18897 0.93205 0.92889 1.12468 1.20193 0.97897 0.89481 0.87345 0.89356 1.57476 1.06687 1.10374 1.50960 1.18533 0.99918 0.90878 0.91978 1.17596 0.96095 0.94146 0.84558 1.91506 1.74471 1.87013 1.57884 1.21027 0.99567 0.95236 1.00915 1.20815 0.99185 1.00120 0.92828 1.21056 0.99789 0.94578 0.97889 1.19722 0.99769 0.94974 0.94450 1.19804 0.94042 0.96516 0.93682 0.88734 1.23244 0.96626 0.97109 1.01323 1.23577 0.98239 0.96695 0.98653 1.21730 0.91414 1.01538 0.98921 1.22988 0.98693 0.94289 0.97581 0.88899 1.20499 0.98189 0.91463 0.97628 1.21127 0.93784 0.98772 1.11335 0.91986 0.86522 0.87671 0.81288 0.84798 0.85312 0.85756 0.85812 0.85558 0.89375 0.90504 0.87551 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.14 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.82 9.49 30.88 0.29 -10.53 16 8 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 9 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.19 -3.88 9.99 -39.39 -0.39 -4.27 16 12 C -0.06 -1.07 9.25 -39.61 -0.37 -1.44 16 13 C -0.17 -2.81 4.43 -104.58 -0.46 -3.27 16 14 C 0.16 2.15 1.97 -69.16 -0.14 2.01 16 15 H 0.09 1.29 7.18 -51.93 -0.37 0.92 16 16 N -0.63 -8.51 5.86 -53.36 -0.31 -8.83 16 17 C 0.09 1.08 6.09 -83.78 -0.51 0.57 16 18 C 0.10 1.21 7.29 -39.14 -0.29 0.93 16 19 F -0.13 -1.85 16.98 2.25 0.04 -1.82 16 20 C -0.15 -1.44 10.02 -39.62 -0.40 -1.84 16 21 C -0.11 -0.91 10.04 -39.66 -0.40 -1.31 16 22 C -0.11 -1.00 9.46 -39.44 -0.37 -1.37 16 23 C -0.09 -0.91 5.12 -104.67 -0.54 -1.45 16 24 C -0.02 -0.22 2.75 -92.32 -0.25 -0.48 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 C -0.17 -1.57 9.57 -35.79 -0.34 -1.91 16 27 C -0.15 -1.51 10.32 -35.57 -0.37 -1.88 16 28 C -0.10 -1.08 6.16 -26.14 -0.16 -1.24 16 29 C -0.12 -1.31 3.27 -88.59 -0.29 -1.60 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 C -0.06 -1.04 8.13 -39.61 -0.32 -1.36 16 32 C -0.23 -4.85 9.17 -39.39 -0.36 -5.22 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 35 H 0.11 1.50 6.55 -52.49 -0.34 1.15 16 36 H 0.36 4.61 6.84 -39.29 -0.27 4.34 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.83 8.05 -52.49 -0.42 0.40 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.09 1.11 5.78 -51.93 -0.30 0.81 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.11 1.62 7.98 -52.48 -0.42 1.20 16 45 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -30.51 368.05 -10.23 -40.74 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.21 Total: 9.63 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -6.02 Total: -31.26 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.45 Total: -33.21 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.51 -10.23 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409159049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.759 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds