Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86792 * 120.00552 * 2 1 4 4 H 1.48499 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47298 * 300.00329 * 3 2 1 6 6 H 1.48505 * 109.47116 * 59.99813 * 3 2 1 7 7 C 1.38657 * 119.99327 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00077 * 180.02562 * 7 2 1 9 9 O 1.34800 * 120.00560 * 359.97438 * 7 2 1 10 10 C 1.35585 * 117.00404 * 174.91944 * 9 7 2 11 11 C 1.38744 * 120.16242 * 5.80174 * 10 9 7 12 12 C 1.38103 * 120.08733 * 180.25899 * 11 10 9 13 13 C 1.38543 * 120.40773 * 359.73805 * 12 11 10 14 14 C 1.37867 * 120.32452 * 359.97438 * 13 12 11 15 15 C 1.39707 * 119.90355 * 0.02562 * 14 13 12 16 16 C 1.47264 * 120.19721 * 179.97438 * 15 14 13 17 17 N 1.29892 * 119.99729 * 180.02562 * 16 15 14 18 18 N 1.40102 * 119.99756 * 185.04798 * 17 16 15 19 19 C 1.36499 * 119.72680 * 240.75634 * 18 17 16 20 20 O 1.35058 * 118.43395 * 0.02562 * 19 18 17 21 21 N 1.30677 * 123.12288 * 179.97438 * 19 18 17 22 22 C 1.35434 * 121.53675 * 0.02562 * 21 19 18 23 23 C 1.39749 * 121.65479 * 180.02562 * 22 21 19 24 24 C 1.36658 * 119.65669 * 179.97438 * 23 22 21 25 25 C 1.38886 * 120.97611 * 0.04504 * 24 23 22 26 26 C 1.36756 * 120.73339 * 359.95502 * 25 24 23 27 27 C 1.39438 * 119.50110 * 0.02562 * 26 25 24 28 28 C 1.35329 * 119.72711 * 60.75789 * 18 17 16 29 29 O 1.21762 * 121.23798 * 0.02562 * 28 18 17 30 30 H 0.97003 * 119.99335 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.95622 * 359.97288 * 11 10 9 32 32 H 1.07998 * 119.79371 * 179.76267 * 12 11 10 33 33 H 1.08001 * 119.83407 * 180.02562 * 13 12 11 34 34 H 1.07992 * 120.04408 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.99860 * 359.97438 * 16 15 14 36 36 H 0.96697 * 113.99640 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.16726 * 359.97438 * 23 22 21 38 38 H 1.08005 * 119.50840 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.63174 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.25266 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3461 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0086 -1.2009 -0.0005 8 1 3.0886 -1.2010 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0688 -3.5031 -0.1081 11 6 3.4547 -3.4409 -0.0908 12 6 4.2011 -4.5972 -0.2058 13 6 3.5747 -5.8263 -0.3336 14 6 2.1985 -5.9083 -0.3468 15 6 1.4305 -4.7470 -0.2313 16 6 -0.0399 -4.8269 -0.2453 17 7 -0.7501 -3.7447 -0.1382 18 7 -2.1455 -3.8290 -0.0449 19 6 -2.9245 -3.2379 -0.9973 20 8 -2.3163 -2.5839 -2.0105 21 7 -4.2305 -3.2756 -0.9759 22 6 -4.9047 -3.9141 0.0100 23 6 -6.3013 -3.9563 0.0351 24 6 -6.9399 -4.6128 1.0494 25 6 -6.2213 -5.2397 2.0591 26 6 -4.8539 -5.2158 2.0622 27 6 -4.1765 -4.5535 1.0391 28 6 -2.7099 -4.4957 0.9887 29 8 -2.0272 -5.0272 1.8454 30 1 -0.4849 0.8401 -0.0004 31 1 3.9506 -2.4866 0.0081 32 1 5.2796 -4.5430 -0.1956 33 1 4.1674 -6.7248 -0.4225 34 1 1.7150 -6.8688 -0.4462 35 1 -0.5276 -5.7853 -0.3453 36 1 -2.9279 -2.1905 -2.6478 37 1 -6.8730 -3.4726 -0.7431 38 1 -8.0193 -4.6443 1.0662 39 1 -6.7482 -5.7519 2.8505 40 1 -4.3029 -5.7062 2.8510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409349219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = 44.373654 kcal Electronic energy + Delta-G solvation = -30093.490131 eV Core-core repulsion = 25841.754216 eV Total energy + Delta-G solvation = -4251.735915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.105 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39958 -39.21849 -38.69622 -38.41222 -36.54033 -36.07985 -35.21990 -32.73895 -32.32443 -31.24447 -29.78303 -29.38245 -28.72029 -25.52516 -24.90792 -24.20440 -22.87138 -21.95254 -21.68555 -20.28735 -19.23545 -18.91811 -18.08062 -17.90620 -16.96746 -16.59158 -16.13707 -15.84300 -15.12682 -14.92689 -14.69399 -14.58395 -14.25314 -14.00403 -13.96313 -13.81322 -13.66196 -13.46468 -13.12767 -12.79950 -12.62975 -11.95495 -11.92150 -11.77780 -11.70448 -11.43537 -11.08334 -10.96957 -10.86632 -10.82010 -10.76810 -10.49628 -10.05108 -9.99563 -9.49297 -9.15267 -8.93632 -8.84649 -8.13676 -7.74993 -7.28011 -6.52706 -4.09331 0.72546 0.94068 1.40057 2.02647 2.29750 2.30519 2.79757 3.04857 3.07654 3.08156 3.13595 3.59541 3.87260 4.07682 4.29719 4.39435 4.51998 4.78126 4.92562 4.99024 5.04368 5.13510 5.24015 5.32928 5.43887 5.54631 5.58300 5.72187 5.92064 5.95827 6.04943 6.11282 6.24957 6.30124 6.41457 6.55497 6.62236 6.67186 6.74054 6.91652 7.06183 7.19424 7.24587 7.31050 7.55419 7.66070 7.85764 8.04155 8.42757 8.87743 9.57834 10.59629 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.003806 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.863261 B = 7355.258960 C = 9179.996763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.047 3.953 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.397 4.397 8 H 0.094 0.906 9 O -0.117 6.117 10 C 0.177 3.823 11 C -0.234 4.234 12 C -0.051 4.051 13 C -0.226 4.226 14 C -0.028 4.028 15 C -0.167 4.167 16 C 0.187 3.813 17 N -0.224 5.224 18 N -0.394 5.394 19 C 0.622 3.378 20 O -0.422 6.422 21 N -0.600 5.600 22 C 0.205 3.795 23 C -0.131 4.131 24 C -0.066 4.066 25 C -0.164 4.164 26 C -0.027 4.027 27 C -0.224 4.224 28 C 0.549 3.451 29 O -0.503 6.503 30 H 0.269 0.731 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.424 0.576 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -8.336 -2.498 11.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.112 0.888 9 O -0.013 6.013 10 C 0.116 3.884 11 C -0.254 4.254 12 C -0.070 4.070 13 C -0.245 4.245 14 C -0.049 4.049 15 C -0.173 4.173 16 C -0.017 4.017 17 N -0.028 5.028 18 N -0.208 5.208 19 C 0.321 3.679 20 O -0.213 6.213 21 N -0.347 5.347 22 C 0.093 3.907 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.183 4.183 26 C -0.046 4.046 27 C -0.232 4.232 28 C 0.342 3.658 29 O -0.375 6.375 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.282 0.718 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.913 -7.192 -2.221 10.922 hybrid contribution 0.397 -0.009 0.226 0.457 sum -7.516 -7.202 -1.995 10.599 Atomic orbital electron populations 1.70143 1.05832 1.27469 1.41965 1.25338 0.95821 0.98832 0.96174 0.85684 0.79294 0.80345 0.78336 1.18975 1.20010 1.20102 1.21544 0.91966 0.81046 1.52711 0.88830 1.84141 1.33591 1.10984 1.72633 1.19415 0.90029 0.87526 0.91385 1.21164 0.93447 0.99344 1.11408 1.20926 0.98716 0.92309 0.95097 1.20464 0.93889 0.97215 1.12967 1.20727 0.93631 0.95515 0.95027 1.17309 0.88263 0.92095 1.19591 1.24955 0.94535 0.94617 0.87603 1.77038 0.83130 1.21875 1.20781 1.47502 1.06426 1.45744 1.21078 1.20023 0.83290 0.82809 0.81762 1.85015 1.37162 1.65137 1.34027 1.68782 1.01932 1.33395 1.30544 1.18485 0.93953 0.90224 0.88061 1.20470 0.91175 1.02842 1.00588 1.20955 1.00139 0.94472 0.92996 1.20776 0.93597 1.03530 1.00414 1.20706 0.94283 0.94171 0.95480 1.20494 0.91605 1.09629 1.01476 1.18688 0.88321 0.77805 0.80976 1.90891 1.64738 1.45192 1.36715 0.92067 0.85115 0.87126 0.87046 0.86510 0.87762 0.71840 0.84629 0.85345 0.85468 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.19 13.67 55.48 0.76 -22.43 16 2 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.40 -10.64 9.49 30.89 0.29 -10.35 16 8 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 9 O -0.12 -3.22 7.63 0.64 0.00 -3.22 16 10 C 0.18 4.18 6.66 -38.60 -0.26 3.93 16 11 C -0.23 -4.86 9.16 -39.44 -0.36 -5.22 16 12 C -0.05 -0.88 10.03 -39.52 -0.40 -1.27 16 13 C -0.23 -3.64 10.03 -39.60 -0.40 -4.04 16 14 C -0.03 -0.49 9.79 -39.17 -0.38 -0.87 16 15 C -0.17 -3.51 5.88 -104.89 -0.62 -4.13 16 16 C 0.19 3.95 9.65 -14.71 -0.14 3.81 16 17 N -0.22 -5.31 8.44 32.13 0.27 -5.04 16 18 N -0.39 -8.47 3.30 -14.45 -0.05 -8.52 16 19 C 0.62 11.78 8.68 -88.88 -0.77 11.01 16 20 O -0.42 -7.45 13.09 -16.88 -0.22 -7.67 16 21 N -0.60 -10.13 10.22 -12.15 -0.12 -10.25 16 22 C 0.20 3.32 6.63 -84.53 -0.56 2.76 16 23 C -0.13 -1.65 10.00 -39.59 -0.40 -2.05 16 24 C -0.07 -0.69 9.95 -39.91 -0.40 -1.09 16 25 C -0.16 -1.84 9.97 -39.88 -0.40 -2.24 16 26 C -0.03 -0.39 9.64 -39.67 -0.38 -0.77 16 27 C -0.22 -3.91 5.89 -104.78 -0.62 -4.53 16 28 C 0.55 11.46 7.55 -12.53 -0.09 11.36 16 29 O -0.50 -11.49 16.28 5.13 0.08 -11.41 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.13 2.68 5.64 -52.48 -0.30 2.39 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.42 4.89 8.92 45.56 0.41 5.30 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.84 7.83 -52.49 -0.41 1.43 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -34.19 360.31 -7.51 -41.70 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.67 Total: 9.13 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -5.97 Total: -2.54 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.86 Total: -46.24 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.13 Total: -22.29 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.19 -7.51 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409349219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.076 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds