Wall clock time and date at job start Tue Mar 31 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86792 * 120.00552 * 2 1 4 4 H 1.48499 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47298 * 300.00329 * 3 2 1 6 6 H 1.48505 * 109.47116 * 59.99813 * 3 2 1 7 7 C 1.38657 * 119.99327 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00077 * 180.02562 * 7 2 1 9 9 O 1.34800 * 120.00560 * 359.97438 * 7 2 1 10 10 C 1.35585 * 117.00404 * 174.91944 * 9 7 2 11 11 C 1.38744 * 120.16242 * 5.80174 * 10 9 7 12 12 C 1.38103 * 120.08733 * 180.25899 * 11 10 9 13 13 C 1.38543 * 120.40773 * 359.73805 * 12 11 10 14 14 C 1.37867 * 120.32452 * 359.97438 * 13 12 11 15 15 C 1.39707 * 119.90355 * 0.02562 * 14 13 12 16 16 C 1.47264 * 120.19721 * 179.97438 * 15 14 13 17 17 N 1.29892 * 119.99729 * 180.02562 * 16 15 14 18 18 N 1.40102 * 119.99756 * 185.04798 * 17 16 15 19 19 C 1.36499 * 119.72680 * 240.75634 * 18 17 16 20 20 O 1.35058 * 118.43395 * 0.02562 * 19 18 17 21 21 N 1.30677 * 123.12288 * 179.97438 * 19 18 17 22 22 C 1.35434 * 121.53675 * 0.02562 * 21 19 18 23 23 C 1.39749 * 121.65479 * 180.02562 * 22 21 19 24 24 C 1.36658 * 119.65669 * 179.97438 * 23 22 21 25 25 C 1.38886 * 120.97611 * 0.04504 * 24 23 22 26 26 C 1.36756 * 120.73339 * 359.95502 * 25 24 23 27 27 C 1.39438 * 119.50110 * 0.02562 * 26 25 24 28 28 C 1.35329 * 119.72711 * 60.75789 * 18 17 16 29 29 O 1.21762 * 121.23798 * 0.02562 * 28 18 17 30 30 H 0.97003 * 119.99335 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.95622 * 359.97288 * 11 10 9 32 32 H 1.07998 * 119.79371 * 179.76267 * 12 11 10 33 33 H 1.08001 * 119.83407 * 180.02562 * 13 12 11 34 34 H 1.07992 * 120.04408 * 180.02562 * 14 13 12 35 35 H 1.08000 * 119.99860 * 359.97438 * 16 15 14 36 36 H 0.96697 * 113.99640 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.16726 * 359.97438 * 23 22 21 38 38 H 1.08005 * 119.50840 * 180.02562 * 24 23 22 39 39 H 1.07998 * 119.63174 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.25266 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3461 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0086 -1.2009 -0.0005 8 1 3.0886 -1.2010 -0.0001 9 8 1.3346 -2.3683 -0.0005 10 6 2.0688 -3.5031 -0.1081 11 6 3.4547 -3.4409 -0.0908 12 6 4.2011 -4.5972 -0.2058 13 6 3.5747 -5.8263 -0.3336 14 6 2.1985 -5.9083 -0.3468 15 6 1.4305 -4.7470 -0.2313 16 6 -0.0399 -4.8269 -0.2453 17 7 -0.7501 -3.7447 -0.1382 18 7 -2.1455 -3.8290 -0.0449 19 6 -2.9245 -3.2379 -0.9973 20 8 -2.3163 -2.5839 -2.0105 21 7 -4.2305 -3.2756 -0.9759 22 6 -4.9047 -3.9141 0.0100 23 6 -6.3013 -3.9563 0.0351 24 6 -6.9399 -4.6128 1.0494 25 6 -6.2213 -5.2397 2.0591 26 6 -4.8539 -5.2158 2.0622 27 6 -4.1765 -4.5535 1.0391 28 6 -2.7099 -4.4957 0.9887 29 8 -2.0272 -5.0272 1.8454 30 1 -0.4849 0.8401 -0.0004 31 1 3.9506 -2.4866 0.0081 32 1 5.2796 -4.5430 -0.1956 33 1 4.1674 -6.7248 -0.4225 34 1 1.7150 -6.8688 -0.4462 35 1 -0.5276 -5.7853 -0.3453 36 1 -2.9279 -2.1905 -2.6478 37 1 -6.8730 -3.4726 -0.7431 38 1 -8.0193 -4.6443 1.0662 39 1 -6.7482 -5.7519 2.8505 40 1 -4.3029 -5.7062 2.8510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409349219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:05 Heat of formation + Delta-G solvation = 18.905472 kcal Electronic energy + Delta-G solvation = -30094.594514 eV Core-core repulsion = 25841.754216 eV Total energy + Delta-G solvation = -4252.840298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.105 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79773 -40.84555 -40.00282 -39.78570 -38.18517 -37.59607 -36.56736 -34.37132 -34.03057 -32.41322 -31.24985 -30.60023 -30.28590 -27.39598 -26.29500 -25.56043 -24.29707 -23.31709 -23.09763 -21.78132 -20.61340 -20.23464 -19.82208 -19.38493 -18.59025 -18.02842 -17.68293 -17.10517 -16.62470 -16.28412 -16.12560 -15.94706 -15.75912 -15.57112 -15.47622 -15.19815 -15.11022 -14.68193 -14.55044 -14.28967 -14.10409 -13.55378 -13.48567 -13.07164 -12.93747 -12.75967 -12.71821 -12.45299 -12.38270 -12.28655 -12.11465 -12.08036 -11.55756 -11.32863 -11.19969 -10.79765 -10.43417 -10.18256 -9.63716 -9.03700 -8.91096 -8.41137 -6.08467 -0.52817 -0.25567 -0.11351 0.59737 0.75815 0.97485 1.32390 1.33654 1.42227 1.50731 1.74525 2.15386 2.24387 2.84498 2.86912 2.95625 3.16978 3.22592 3.42338 3.48390 3.62653 3.97008 4.05741 4.20992 4.27058 4.28649 4.34020 4.45649 4.60027 4.65580 4.75433 4.91518 4.99332 5.02108 5.11573 5.16936 5.19175 5.39426 5.44180 5.54630 5.62222 5.72451 5.76427 5.94722 6.05064 6.11816 6.18235 6.69972 6.88806 6.98379 7.80142 8.75947 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.003806 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.863261 B = 7355.258960 C = 9179.996763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C -0.011 4.011 3 Si 1.012 2.988 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.102 0.898 9 O -0.169 6.169 10 C 0.146 3.854 11 C -0.258 4.258 12 C -0.039 4.039 13 C -0.201 4.201 14 C -0.025 4.025 15 C -0.183 4.183 16 C 0.186 3.814 17 N -0.266 5.266 18 N -0.404 5.404 19 C 0.600 3.400 20 O -0.438 6.438 21 N -0.578 5.578 22 C 0.171 3.829 23 C -0.126 4.126 24 C -0.047 4.047 25 C -0.140 4.140 26 C -0.047 4.047 27 C -0.244 4.244 28 C 0.533 3.467 29 O -0.544 6.544 30 H 0.266 0.734 31 H 0.123 0.877 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.442 0.558 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -10.959 -2.535 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.212 4.212 3 Si 0.832 3.168 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.499 4.499 8 H 0.119 0.881 9 O -0.070 6.070 10 C 0.089 3.911 11 C -0.278 4.278 12 C -0.058 4.058 13 C -0.220 4.220 14 C -0.045 4.045 15 C -0.188 4.188 16 C -0.018 4.018 17 N -0.071 5.071 18 N -0.218 5.218 19 C 0.299 3.701 20 O -0.234 6.234 21 N -0.324 5.324 22 C 0.059 3.941 23 C -0.146 4.146 24 C -0.065 4.065 25 C -0.158 4.158 26 C -0.067 4.067 27 C -0.252 4.252 28 C 0.330 3.670 29 O -0.420 6.420 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.304 0.696 37 H 0.177 0.823 38 H 0.198 0.802 39 H 0.186 0.814 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.794 -9.854 -2.293 13.405 hybrid contribution 0.584 0.349 0.246 0.723 sum -8.210 -9.505 -2.047 12.726 Atomic orbital electron populations 1.70319 1.07702 1.27915 1.45808 1.26481 0.96707 1.02322 0.95720 0.84624 0.78496 0.75401 0.78259 1.17380 1.19341 1.20042 1.21952 0.92522 0.81839 1.53557 0.88095 1.84157 1.34635 1.11755 1.76415 1.20127 0.91607 0.87742 0.91602 1.21301 0.92611 1.00799 1.13058 1.21433 1.00688 0.91307 0.92355 1.21118 0.93695 0.98474 1.08668 1.21267 0.94288 0.95664 0.93251 1.17879 0.88682 0.92737 1.19524 1.25263 0.94816 0.95080 0.86686 1.76904 0.84942 1.24023 1.21200 1.47561 1.05794 1.46371 1.22062 1.20197 0.83675 0.84047 0.82219 1.84975 1.38523 1.65425 1.34490 1.68824 1.00665 1.32325 1.30600 1.18966 0.95591 0.91440 0.88066 1.20884 0.89329 1.02544 1.01834 1.21549 1.02556 0.91557 0.90881 1.21303 0.92033 1.01488 1.00952 1.20897 0.95975 0.94812 0.94990 1.20574 0.89541 1.11628 1.03412 1.19390 0.89892 0.77363 0.80393 1.90823 1.65798 1.47361 1.38058 0.92455 0.85951 0.83018 0.82063 0.82458 0.85470 0.69639 0.82294 0.80249 0.81363 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -54.10 13.67 21.61 0.30 -53.81 16 2 C -0.01 -0.63 5.49 84.84 0.47 -0.16 16 3 Si 1.01 43.16 29.55 68.60 2.03 45.19 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.42 -24.46 9.49 67.92 0.64 -23.81 16 8 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 9 O -0.17 -10.10 7.63 -20.62 -0.16 -10.25 16 10 C 0.15 7.27 6.66 22.91 0.15 7.42 16 11 C -0.26 -10.88 9.16 22.36 0.20 -10.68 16 12 C -0.04 -1.22 10.03 22.31 0.22 -1.00 16 13 C -0.20 -5.56 10.03 22.25 0.22 -5.33 16 14 C -0.02 -0.78 9.79 22.54 0.22 -0.56 16 15 C -0.18 -7.88 5.88 -20.04 -0.12 -7.99 16 16 C 0.19 8.32 9.65 87.35 0.84 9.16 16 17 N -0.27 -13.74 8.44 -52.26 -0.44 -14.18 16 18 N -0.40 -18.84 3.30 -428.44 -1.41 -20.25 16 19 C 0.60 24.55 8.68 179.74 1.56 26.11 16 20 O -0.44 -17.07 13.09 -83.31 -1.09 -18.16 16 21 N -0.58 -20.27 10.22 -306.33 -3.13 -23.40 16 22 C 0.17 5.53 6.63 39.72 0.26 5.79 16 23 C -0.13 -2.82 10.00 22.27 0.22 -2.60 16 24 C -0.05 -0.74 9.95 22.06 0.22 -0.52 16 25 C -0.14 -2.57 9.97 22.08 0.22 -2.35 16 26 C -0.05 -1.32 9.64 22.21 0.21 -1.11 16 27 C -0.24 -8.78 5.89 -19.97 -0.12 -8.90 16 28 C 0.53 23.96 7.55 86.41 0.65 24.61 16 29 O -0.54 -26.80 16.28 -4.55 -0.07 -26.87 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 32 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.44 11.46 8.92 -74.06 -0.66 10.80 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 3.65 7.83 -2.91 -0.02 3.63 16 Total: -1.00 -86.39 360.31 2.58 -83.80 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.47 Total: 29.85 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.10 Total: 8.08 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.69 Total: -111.64 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.32 Total: -55.29 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -86.39 2.58 -83.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409349219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.709 kcal (2) G-P(sol) polarization free energy of solvation -86.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds