Wall clock time and date at job start Tue Mar 31 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00335 * 3 2 1 5 5 H 1.48497 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46941 * 120.00668 * 3 2 1 7 7 C 1.38664 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00066 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.35636 * 116.99999 * 174.92696 * 9 7 2 11 11 C 1.39096 * 119.91242 * 185.44859 * 10 9 7 12 12 C 1.37698 * 120.08908 * 179.76550 * 11 10 9 13 13 C 1.39837 * 119.90951 * 0.53128 * 12 11 10 14 14 C 1.47309 * 120.08769 * 179.69922 * 13 12 11 15 15 N 1.29873 * 120.00087 * 0.02562 * 14 13 12 16 16 N 1.40103 * 120.00139 * 185.03815 * 15 14 13 17 17 C 1.36500 * 119.72417 * 240.37315 * 16 15 14 18 18 O 1.35050 * 118.43899 * 359.97438 * 17 16 15 19 19 N 1.30681 * 123.11976 * 179.68651 * 17 16 15 20 20 C 1.35436 * 121.53311 * 0.59148 * 19 17 16 21 21 C 1.39749 * 121.65649 * 179.73574 * 20 19 17 22 22 C 1.36655 * 119.66154 * 179.97438 * 21 20 19 23 23 C 1.38895 * 120.97501 * 0.02562 * 22 21 20 24 24 C 1.36755 * 120.72984 * 0.02562 * 23 22 21 25 25 C 1.39434 * 119.50199 * 359.97438 * 24 23 22 26 26 C 1.35327 * 119.72530 * 60.64753 * 16 15 14 27 27 O 1.21753 * 121.24186 * 359.97438 * 26 16 15 28 28 C 1.39837 * 119.82481 * 359.72737 * 13 12 11 29 29 C 1.37705 * 119.90707 * 359.97438 * 28 13 12 30 30 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.95441 * 0.02626 * 11 10 9 32 32 H 1.08001 * 120.04077 * 180.23099 * 12 11 10 33 33 H 1.08000 * 119.99949 * 180.02562 * 14 13 12 34 34 H 0.96703 * 113.99756 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.17092 * 359.95320 * 21 20 19 36 36 H 1.08006 * 119.51365 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.63386 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.25214 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.04550 * 179.97438 * 28 13 12 40 40 H 1.08005 * 119.95337 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6961 1.2124 7 6 2.0087 -1.2009 -0.0005 8 1 3.0886 -1.2010 -0.0010 9 8 1.3346 -2.3683 -0.0005 10 6 2.0691 -3.5035 -0.1079 11 6 1.4312 -4.7336 -0.2285 12 6 2.1733 -5.8879 -0.3426 13 6 3.5701 -5.8233 -0.3260 14 6 4.3678 -7.0563 -0.4412 15 7 3.7740 -8.2054 -0.5588 16 7 4.5277 -9.3864 -0.5621 17 6 4.4887 -10.2111 -1.6491 18 8 3.7150 -9.8569 -2.6977 19 7 5.1688 -11.3244 -1.7254 20 6 5.9595 -11.7426 -0.7085 21 6 6.6836 -12.9353 -0.7852 22 6 7.4696 -13.3181 0.2652 23 6 7.5602 -12.5389 1.4114 24 6 6.8629 -11.3672 1.5167 25 6 6.0533 -10.9525 0.4599 26 6 5.2839 -9.7028 0.5147 27 8 5.3245 -8.9787 1.4926 28 6 4.2076 -4.5852 -0.1992 29 6 3.4583 -3.4349 -0.0918 30 1 -0.4850 0.8401 0.0004 31 1 0.3524 -4.7831 -0.2368 32 1 1.6772 -6.8423 -0.4399 33 1 5.4465 -7.0048 -0.4278 34 1 3.7354 -10.4860 -3.4318 35 1 6.6222 -13.5517 -1.6699 36 1 8.0279 -14.2406 0.2035 37 1 8.1883 -12.8619 2.2284 38 1 6.9388 -10.7674 2.4117 39 1 5.2862 -4.5312 -0.1856 40 1 3.9499 -2.4782 0.0057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409353051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:46 Heat of formation + Delta-G solvation = 32.642767 kcal Electronic energy + Delta-G solvation = -28348.226122 eV Core-core repulsion = 24095.981518 eV Total energy + Delta-G solvation = -4252.244604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.105 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85872 -39.30973 -39.15485 -38.87170 -37.15539 -36.44369 -35.46247 -32.94353 -32.39305 -31.45534 -30.46507 -29.81532 -28.77596 -25.84191 -25.13397 -24.54840 -22.89079 -22.33828 -22.10460 -20.46588 -19.69970 -19.34558 -18.54952 -17.99130 -17.30207 -16.98136 -16.60984 -16.20613 -15.39193 -15.20183 -15.04115 -14.72249 -14.53214 -14.40900 -14.34609 -13.94717 -13.90237 -13.71314 -13.38955 -12.96897 -12.66312 -12.49818 -12.26581 -12.12779 -11.90874 -11.89596 -11.36655 -11.29047 -11.25143 -10.91546 -10.84120 -10.60534 -10.41689 -10.29537 -9.61187 -9.52865 -9.39311 -9.01620 -8.42111 -8.19271 -7.37616 -6.70650 -4.25894 0.31756 0.56904 1.10970 1.50653 1.88743 2.10917 2.48811 2.71701 3.01078 3.03277 3.05406 3.09350 3.68503 3.77783 3.84342 3.98657 4.42142 4.42356 4.62253 4.72201 4.87648 4.91464 4.97147 5.03014 5.07351 5.24911 5.45009 5.58987 5.62069 5.71983 5.79974 5.89610 6.01074 6.09486 6.16702 6.21908 6.37942 6.46405 6.65673 6.74547 6.84079 6.95778 7.05238 7.16815 7.21872 7.55641 7.56073 7.74160 7.89189 8.73346 9.38769 10.45312 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.001854 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.078503 B =15098.482480 C =15663.836920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.099 0.901 9 O -0.157 6.157 10 C 0.176 3.824 11 C -0.204 4.204 12 C -0.012 4.012 13 C -0.194 4.194 14 C 0.233 3.767 15 N -0.308 5.308 16 N -0.396 5.396 17 C 0.610 3.390 18 O -0.437 6.437 19 N -0.590 5.590 20 C 0.197 3.803 21 C -0.127 4.127 22 C -0.065 4.065 23 C -0.156 4.156 24 C -0.029 4.029 25 C -0.220 4.220 26 C 0.549 3.451 27 O -0.496 6.496 28 C -0.020 4.020 29 C -0.243 4.243 30 H 0.276 0.724 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.430 0.570 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 -21.382 -3.284 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.116 0.884 9 O -0.056 6.056 10 C 0.118 3.882 11 C -0.223 4.223 12 C -0.032 4.032 13 C -0.199 4.199 14 C 0.032 3.968 15 N -0.115 5.115 16 N -0.211 5.211 17 C 0.308 3.692 18 O -0.231 6.231 19 N -0.335 5.335 20 C 0.086 3.914 21 C -0.146 4.146 22 C -0.084 4.084 23 C -0.175 4.175 24 C -0.048 4.048 25 C -0.228 4.228 26 C 0.342 3.658 27 O -0.367 6.367 28 C -0.040 4.040 29 C -0.263 4.263 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.288 0.712 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.057 -21.202 -3.100 24.587 hybrid contribution 1.357 1.058 0.273 1.742 sum 13.415 -20.144 -2.827 24.366 Atomic orbital electron populations 1.70023 1.06161 1.28539 1.43280 1.25423 0.95935 0.99245 0.95863 0.85692 0.78776 0.79074 0.79478 1.19186 1.20037 1.19191 1.21457 0.92158 0.80499 1.52757 0.88415 1.83931 1.35085 1.11872 1.74760 1.19625 0.90334 0.87852 0.90432 1.20188 1.00017 0.89956 1.12147 1.20881 0.92219 0.97386 0.92701 1.17766 0.92863 0.89458 1.19815 1.25069 0.97736 0.91382 0.82661 1.76122 1.17298 0.90953 1.27092 1.47292 1.41372 1.18549 1.13852 1.20014 0.84599 0.83363 0.81235 1.84871 1.60904 1.51091 1.26200 1.68750 1.19473 1.14284 1.30989 1.18452 0.91856 0.93734 0.87395 1.20510 0.98410 0.95354 1.00349 1.21028 0.95915 0.98955 0.92485 1.20865 1.02057 0.95525 0.99048 1.20751 0.91947 0.95362 0.96736 1.20471 1.06540 0.96886 0.98856 1.18714 0.78321 0.86801 0.81947 1.90933 1.62857 1.52753 1.30207 1.20841 0.98596 0.90908 0.93691 1.21045 0.93595 0.98954 1.12688 0.91414 0.85818 0.85603 0.87383 0.71185 0.84421 0.85031 0.85136 0.84595 0.86662 0.84789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.34 13.67 55.48 0.76 -22.59 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 19.08 29.55 -169.99 -5.02 14.06 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.39 -10.19 9.48 30.89 0.29 -9.90 16 8 H 0.10 2.30 5.19 -52.49 -0.27 2.02 16 9 O -0.16 -4.18 9.75 0.47 0.00 -4.17 16 10 C 0.18 3.95 6.65 -38.95 -0.26 3.70 16 11 C -0.20 -4.10 9.97 -39.46 -0.39 -4.49 16 12 C -0.01 -0.21 9.57 -39.18 -0.37 -0.59 16 13 C -0.19 -3.36 5.87 -105.01 -0.62 -3.98 16 14 C 0.23 3.72 9.64 -14.69 -0.14 3.58 16 15 N -0.31 -5.10 9.69 32.14 0.31 -4.79 16 16 N -0.40 -6.02 3.30 -14.45 -0.05 -6.07 16 17 C 0.61 7.69 8.68 -88.88 -0.77 6.92 16 18 O -0.44 -4.45 13.09 -16.86 -0.22 -4.67 16 19 N -0.59 -6.86 10.22 -12.14 -0.12 -6.99 16 20 C 0.20 2.31 6.63 -84.53 -0.56 1.75 16 21 C -0.13 -1.11 10.00 -39.59 -0.40 -1.51 16 22 C -0.06 -0.46 9.95 -39.91 -0.40 -0.86 16 23 C -0.16 -1.23 9.97 -39.87 -0.40 -1.63 16 24 C -0.03 -0.30 9.64 -39.67 -0.38 -0.69 16 25 C -0.22 -2.86 5.89 -104.78 -0.62 -3.48 16 26 C 0.55 8.63 7.55 -12.52 -0.09 8.53 16 27 O -0.50 -9.02 16.28 5.14 0.08 -8.93 16 28 C -0.02 -0.34 9.78 -39.18 -0.38 -0.72 16 29 C -0.24 -4.84 9.15 -39.46 -0.36 -5.20 16 30 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.13 2.12 7.55 -52.49 -0.40 1.72 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.43 1.97 8.92 45.56 0.41 2.38 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 1.40 7.83 -52.49 -0.41 0.99 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.60 5.62 -52.48 -0.29 2.31 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -32.37 362.55 -7.38 -39.75 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -2.64 Total: 6.50 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -5.95 Total: -7.57 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.90 Total: -40.43 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.13 Total: -17.78 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.37 -7.38 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409353051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.392 kcal (2) G-P(sol) polarization free energy of solvation -32.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds