Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86798 * 120.00399 * 2 1 4 4 H 1.48499 * 109.47312 * 240.00335 * 3 2 1 5 5 H 1.48497 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46941 * 120.00668 * 3 2 1 7 7 C 1.38664 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00066 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.35636 * 116.99999 * 174.92696 * 9 7 2 11 11 C 1.39096 * 119.91242 * 185.44859 * 10 9 7 12 12 C 1.37698 * 120.08908 * 179.76550 * 11 10 9 13 13 C 1.39837 * 119.90951 * 0.53128 * 12 11 10 14 14 C 1.47309 * 120.08769 * 179.69922 * 13 12 11 15 15 N 1.29873 * 120.00087 * 0.02562 * 14 13 12 16 16 N 1.40103 * 120.00139 * 185.03815 * 15 14 13 17 17 C 1.36500 * 119.72417 * 240.37315 * 16 15 14 18 18 O 1.35050 * 118.43899 * 359.97438 * 17 16 15 19 19 N 1.30681 * 123.11976 * 179.68651 * 17 16 15 20 20 C 1.35436 * 121.53311 * 0.59148 * 19 17 16 21 21 C 1.39749 * 121.65649 * 179.73574 * 20 19 17 22 22 C 1.36655 * 119.66154 * 179.97438 * 21 20 19 23 23 C 1.38895 * 120.97501 * 0.02562 * 22 21 20 24 24 C 1.36755 * 120.72984 * 0.02562 * 23 22 21 25 25 C 1.39434 * 119.50199 * 359.97438 * 24 23 22 26 26 C 1.35327 * 119.72530 * 60.64753 * 16 15 14 27 27 O 1.21753 * 121.24186 * 359.97438 * 26 16 15 28 28 C 1.39837 * 119.82481 * 359.72737 * 13 12 11 29 29 C 1.37705 * 119.90707 * 359.97438 * 28 13 12 30 30 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.95441 * 0.02626 * 11 10 9 32 32 H 1.08001 * 120.04077 * 180.23099 * 12 11 10 33 33 H 1.08000 * 119.99949 * 180.02562 * 14 13 12 34 34 H 0.96703 * 113.99756 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.17092 * 359.95320 * 21 20 19 36 36 H 1.08006 * 119.51365 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.63386 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.25214 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.04550 * 179.97438 * 28 13 12 40 40 H 1.08005 * 119.95337 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6961 1.2124 7 6 2.0087 -1.2009 -0.0005 8 1 3.0886 -1.2010 -0.0010 9 8 1.3346 -2.3683 -0.0005 10 6 2.0691 -3.5035 -0.1079 11 6 1.4312 -4.7336 -0.2285 12 6 2.1733 -5.8879 -0.3426 13 6 3.5701 -5.8233 -0.3260 14 6 4.3678 -7.0563 -0.4412 15 7 3.7740 -8.2054 -0.5588 16 7 4.5277 -9.3864 -0.5621 17 6 4.4887 -10.2111 -1.6491 18 8 3.7150 -9.8569 -2.6977 19 7 5.1688 -11.3244 -1.7254 20 6 5.9595 -11.7426 -0.7085 21 6 6.6836 -12.9353 -0.7852 22 6 7.4696 -13.3181 0.2652 23 6 7.5602 -12.5389 1.4114 24 6 6.8629 -11.3672 1.5167 25 6 6.0533 -10.9525 0.4599 26 6 5.2839 -9.7028 0.5147 27 8 5.3245 -8.9787 1.4926 28 6 4.2076 -4.5852 -0.1992 29 6 3.4583 -3.4349 -0.0918 30 1 -0.4850 0.8401 0.0004 31 1 0.3524 -4.7831 -0.2368 32 1 1.6772 -6.8423 -0.4399 33 1 5.4465 -7.0048 -0.4278 34 1 3.7354 -10.4860 -3.4318 35 1 6.6222 -13.5517 -1.6699 36 1 8.0279 -14.2406 0.2035 37 1 8.1883 -12.8619 2.2284 38 1 6.9388 -10.7674 2.4117 39 1 5.2862 -4.5312 -0.1856 40 1 3.9499 -2.4782 0.0057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409353051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = 9.626810 kcal Electronic energy + Delta-G solvation = -28349.224169 eV Core-core repulsion = 24095.981518 eV Total energy + Delta-G solvation = -4253.242651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.105 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.86403 -40.92032 -40.03554 -39.89077 -38.67881 -37.56266 -36.52206 -34.49553 -33.81887 -32.31817 -32.02048 -30.64900 -30.21943 -27.59892 -26.22183 -25.52543 -24.23830 -23.63881 -23.12751 -21.86887 -20.62953 -20.26365 -20.09092 -19.33559 -18.77300 -18.05118 -17.86117 -17.13343 -16.65568 -16.40252 -16.16327 -16.05832 -15.81298 -15.67385 -15.52044 -15.25245 -15.12990 -14.71529 -14.60180 -14.29468 -14.12840 -13.85459 -13.60643 -13.26246 -12.96862 -12.94153 -12.80016 -12.62372 -12.47419 -12.33314 -12.16272 -12.07762 -11.54735 -11.36315 -11.26917 -10.83821 -10.63093 -10.20504 -9.94756 -9.11208 -8.96008 -8.53627 -6.20636 -0.58779 -0.26860 -0.24151 0.45136 0.54262 0.95550 1.19460 1.37285 1.49381 1.53361 1.68897 2.15004 2.15125 2.77131 2.79443 2.90581 3.10201 3.13207 3.34540 3.43982 3.60003 3.91959 4.00170 4.06910 4.12737 4.28003 4.33294 4.38042 4.47371 4.58976 4.68225 4.87154 4.88244 4.98302 5.06849 5.13585 5.16208 5.38022 5.42400 5.44887 5.48671 5.56229 5.73646 5.89251 5.94596 5.99037 6.08405 6.60995 6.75187 6.90061 7.64230 8.67774 Molecular weight = 351.11amu Principal moments of inertia in cm(-1) A = 0.026432 B = 0.001854 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.078503 B =15098.482480 C =15663.836920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.112 0.888 9 O -0.214 6.214 10 C 0.148 3.852 11 C -0.212 4.212 12 C -0.010 4.010 13 C -0.174 4.174 14 C 0.233 3.767 15 N -0.314 5.314 16 N -0.404 5.404 17 C 0.598 3.402 18 O -0.440 6.440 19 N -0.572 5.572 20 C 0.171 3.829 21 C -0.124 4.124 22 C -0.049 4.049 23 C -0.140 4.140 24 C -0.048 4.048 25 C -0.240 4.240 26 C 0.539 3.461 27 O -0.536 6.536 28 C -0.010 4.010 29 C -0.247 4.247 30 H 0.276 0.724 31 H 0.122 0.878 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.450 0.550 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.130 0.870 39 H 0.159 0.841 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.529 -25.240 -3.880 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.217 4.217 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.493 4.493 8 H 0.130 0.870 9 O -0.117 6.117 10 C 0.093 3.907 11 C -0.231 4.231 12 C -0.030 4.030 13 C -0.179 4.179 14 C 0.029 3.971 15 N -0.119 5.119 16 N -0.220 5.220 17 C 0.296 3.704 18 O -0.238 6.238 19 N -0.316 5.316 20 C 0.060 3.940 21 C -0.143 4.143 22 C -0.068 4.068 23 C -0.158 4.158 24 C -0.068 4.068 25 C -0.247 4.247 26 C 0.335 3.665 27 O -0.411 6.411 28 C -0.030 4.030 29 C -0.266 4.266 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.313 0.687 35 H 0.178 0.822 36 H 0.192 0.808 37 H 0.181 0.819 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.139 -25.176 -3.747 30.139 hybrid contribution 0.376 1.492 0.412 1.593 sum 16.515 -23.684 -3.335 29.066 Atomic orbital electron populations 1.70169 1.08158 1.29301 1.47153 1.26670 0.96829 1.02950 0.95296 0.84616 0.77412 0.73920 0.80141 1.17849 1.19856 1.17999 1.21942 0.92986 0.80929 1.53427 0.87041 1.83922 1.36440 1.12849 1.78510 1.20129 0.91749 0.87676 0.91098 1.20344 1.00366 0.90083 1.12349 1.21051 0.92819 0.97103 0.92023 1.18052 0.92663 0.90484 1.16658 1.25033 0.98582 0.90562 0.82915 1.75916 1.19154 0.91800 1.24985 1.47303 1.41605 1.18149 1.14937 1.20139 0.85548 0.83326 0.81391 1.84842 1.60337 1.52154 1.26445 1.68819 1.18781 1.13234 1.30797 1.18842 0.93008 0.94988 0.87112 1.20891 0.97537 0.94181 1.01735 1.21544 0.94511 0.99776 0.91003 1.21303 1.00526 0.93833 1.00167 1.20902 0.92800 0.96824 0.96247 1.20528 1.07502 0.96238 1.00435 1.19240 0.78276 0.87516 0.81460 1.90892 1.64524 1.54139 1.31566 1.21204 1.00601 0.89466 0.91705 1.21204 0.92674 1.00277 1.12466 0.91525 0.86020 0.84236 0.85195 0.68662 0.82241 0.80759 0.81914 0.85164 0.82365 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 13.67 21.61 0.30 -53.37 16 2 C -0.02 -0.98 5.49 84.84 0.47 -0.51 16 3 Si 1.02 40.41 29.55 68.60 2.03 42.44 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.42 -22.82 9.48 67.92 0.64 -22.18 16 8 H 0.11 5.44 5.19 -2.91 -0.02 5.42 16 9 O -0.21 -12.17 9.75 -21.22 -0.21 -12.38 16 10 C 0.15 6.95 6.65 22.68 0.15 7.10 16 11 C -0.21 -8.86 9.97 22.35 0.22 -8.64 16 12 C -0.01 -0.36 9.57 22.53 0.22 -0.14 16 13 C -0.17 -5.76 5.87 -20.12 -0.12 -5.88 16 14 C 0.23 7.00 9.64 87.37 0.84 7.84 16 15 N -0.31 -9.99 9.69 -52.24 -0.51 -10.49 16 16 N -0.40 -11.89 3.30 -428.46 -1.41 -13.30 16 17 C 0.60 14.16 8.68 179.74 1.56 15.72 16 18 O -0.44 -8.21 13.09 -83.24 -1.09 -9.30 16 19 N -0.57 -12.07 10.22 -306.33 -3.13 -15.20 16 20 C 0.17 3.59 6.63 39.72 0.26 3.85 16 21 C -0.12 -1.66 10.00 22.26 0.22 -1.44 16 22 C -0.05 -0.44 9.95 22.06 0.22 -0.22 16 23 C -0.14 -1.61 9.97 22.08 0.22 -1.39 16 24 C -0.05 -0.94 9.64 22.21 0.21 -0.72 16 25 C -0.24 -5.90 5.89 -19.97 -0.12 -6.02 16 26 C 0.54 16.69 7.55 86.41 0.65 17.34 16 27 O -0.54 -19.53 16.28 -4.52 -0.07 -19.61 16 28 C -0.01 -0.31 9.78 22.53 0.22 -0.09 16 29 C -0.25 -9.85 9.15 22.35 0.20 -9.65 16 30 H 0.28 14.90 8.31 -92.70 -0.77 14.13 16 31 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 32 H 0.14 4.61 7.55 -2.91 -0.02 4.59 16 33 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 34 H 0.45 3.21 8.92 -74.05 -0.66 2.55 16 35 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 37 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.13 2.60 7.83 -2.91 -0.02 2.57 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.14 5.34 5.62 -2.91 -0.02 5.32 16 Total: -1.00 -77.03 362.55 2.46 -74.57 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.47 Total: 21.67 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 6.08 Total: -5.03 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -4.75 Total: -92.36 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.37 Total: -41.29 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -77.03 2.46 -74.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409353051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.198 kcal (2) G-P(sol) polarization free energy of solvation -77.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds