Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38522 * 119.99626 * 155.70487 * 3 2 1 5 5 C 1.41185 * 120.00101 * 171.04229 * 4 3 2 6 6 C 1.38230 * 126.86998 * 342.37722 * 5 4 3 7 7 N 1.35585 * 109.43753 * 179.97438 * 6 5 4 8 8 C 1.36880 * 124.72579 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99639 * 153.35358 * 8 7 6 10 10 C 1.39097 * 120.00404 * 333.35319 * 8 7 6 11 11 N 1.31264 * 119.99539 * 356.81607 * 10 8 7 12 12 Si 1.86804 * 120.00464 * 176.81832 * 10 8 7 13 13 H 1.48500 * 109.46914 * 89.99837 * 12 10 8 14 14 H 1.48500 * 109.47247 * 210.00107 * 12 10 8 15 15 H 1.48503 * 109.46486 * 329.99768 * 12 10 8 16 16 C 1.38472 * 110.54665 * 359.97438 * 7 6 5 17 17 C 1.39018 * 132.90972 * 180.02562 * 16 7 6 18 18 C 1.37935 * 119.95827 * 179.31283 * 17 16 7 19 19 C 1.38625 * 120.59446 * 0.53923 * 18 17 16 20 20 C 1.37959 * 120.24436 * 359.64776 * 19 18 17 21 21 C 1.39068 * 119.69281 * 359.97438 * 20 19 18 22 22 C 1.46829 * 120.00261 * 335.70208 * 3 2 1 23 23 O 1.21694 * 120.00312 * 282.53722 * 22 3 2 24 24 N 1.34777 * 120.00236 * 102.54011 * 22 3 2 25 25 C 1.47169 * 120.93932 * 356.22614 * 24 22 3 26 26 C 1.53300 * 108.37780 * 230.47539 * 25 24 22 27 27 O 1.42963 * 109.26289 * 307.77538 * 26 25 24 28 28 C 1.42966 * 114.16708 * 62.55195 * 27 26 25 29 29 C 1.47148 * 120.98683 * 176.24871 * 24 22 3 30 30 H 1.08001 * 120.00318 * 351.03722 * 4 3 2 31 31 H 1.07999 * 125.28336 * 359.95487 * 6 5 4 32 32 H 0.97007 * 119.99762 * 180.02562 * 11 10 8 33 33 H 1.07995 * 120.01929 * 359.96399 * 17 16 7 34 34 H 1.07996 * 119.70201 * 180.16040 * 18 17 16 35 35 H 1.08004 * 119.87365 * 179.62158 * 19 18 17 36 36 H 1.07997 * 120.15632 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.64431 * 110.78355 * 25 24 22 38 38 H 1.08998 * 109.72893 * 350.22161 * 25 24 22 39 39 H 1.08991 * 109.51502 * 187.82349 * 26 25 24 40 40 H 1.09004 * 109.50896 * 67.72210 * 26 25 24 41 41 H 1.09004 * 109.50877 * 57.34119 * 28 27 26 42 42 H 1.08999 * 109.51284 * 177.44144 * 28 27 26 43 43 H 1.09005 * 109.68433 * 9.75335 * 29 24 22 44 44 H 1.08998 * 109.68569 * 249.20104 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 1.0944 -0.4936 5 6 4.6590 1.1802 -0.3232 6 6 5.4304 0.4666 0.5747 7 7 6.7307 0.8255 0.4374 8 6 7.7635 0.3112 1.1739 9 1 8.7625 0.2930 0.7638 10 6 7.5265 -0.1878 2.4505 11 7 6.3251 -0.1088 2.9734 12 14 8.9179 -0.9704 3.4207 13 1 9.6069 0.0704 4.2252 14 1 8.3664 -2.0109 4.3254 15 1 9.8863 -1.5928 2.4826 16 6 6.8682 1.7848 -0.5517 17 6 7.9672 2.4636 -1.0656 18 6 7.7974 3.3774 -2.0848 19 6 6.5358 3.6362 -2.5975 20 6 5.4333 2.9748 -2.0972 21 6 5.5927 2.0454 -1.0750 22 6 3.3027 -1.1579 0.5232 23 8 3.4090 -1.3192 1.7247 24 7 3.8596 -2.0429 -0.3272 25 6 3.6747 -1.9141 -1.7815 26 6 3.2084 -3.2671 -2.3312 27 8 4.1066 -4.2892 -1.8925 28 6 4.1535 -4.4576 -0.4735 29 6 4.6694 -3.1660 0.1711 30 1 2.7296 1.8815 -1.0089 31 1 5.0557 -0.2634 1.2769 32 1 6.1599 -0.4565 3.8638 33 1 8.9545 2.2679 -0.6743 34 1 8.6544 3.9006 -2.4827 35 1 6.4155 4.3585 -3.3914 36 1 4.4510 3.1778 -2.4974 37 1 4.6195 -1.6344 -2.2477 38 1 2.9222 -1.1538 -1.9908 39 1 3.1989 -3.2338 -3.4206 40 1 2.2047 -3.4825 -1.9647 41 1 3.1534 -4.6768 -0.0997 42 1 4.8233 -5.2813 -0.2266 43 1 4.5755 -3.2338 1.2550 44 1 5.7144 -3.0131 -0.0984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409379416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = 34.905025 kcal Electronic energy + Delta-G solvation = -31653.778329 eV Core-core repulsion = 27537.464918 eV Total energy + Delta-G solvation = -4116.313411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.75209 -39.85419 -38.05055 -36.55782 -36.01911 -34.44822 -34.12755 -32.87006 -31.36715 -30.62653 -29.10313 -27.97904 -27.56257 -25.81197 -24.05388 -23.43293 -22.05630 -22.00963 -20.97451 -19.79545 -18.88752 -18.05980 -17.54520 -16.47514 -16.30348 -15.78496 -15.47723 -15.23903 -15.08538 -14.87987 -14.77743 -14.48845 -14.23628 -13.90332 -13.64267 -13.36243 -13.15854 -13.01632 -12.89423 -12.64854 -12.41369 -12.13326 -12.04339 -11.93536 -11.65542 -11.60250 -11.42570 -11.30327 -11.24972 -10.91209 -10.81179 -10.58978 -10.57933 -10.30858 -10.04961 -9.95052 -9.36169 -9.22817 -8.37483 -8.20385 -7.58791 -7.09411 -6.68417 -4.71654 1.17954 1.87148 2.41519 2.85521 2.87263 2.94012 2.95595 3.19735 3.50395 3.53945 3.65776 3.88472 4.08236 4.36148 4.50730 4.67385 4.75683 4.89468 5.06189 5.12617 5.24650 5.36261 5.37934 5.41983 5.51482 5.60482 5.61395 5.68159 5.75923 5.89638 5.97289 6.02091 6.04407 6.16330 6.27849 6.47316 6.54511 6.71481 6.75667 6.77003 6.84502 6.89011 7.07915 7.13583 7.19373 7.29807 7.55314 7.64062 7.74463 8.11013 8.17300 8.50684 8.68642 8.91481 9.96031 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.005507 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.543009 B = 5082.822551 C = 6703.773266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.291 3.709 3 C -0.261 4.261 4 C 0.132 3.868 5 C -0.291 4.291 6 C 0.134 3.866 7 N -0.255 5.255 8 C -0.352 4.352 9 H 0.113 0.887 10 C 0.045 3.955 11 N -0.813 5.813 12 Si 0.943 3.057 13 H -0.268 1.268 14 H -0.271 1.271 15 H -0.261 1.261 16 C 0.043 3.957 17 C -0.093 4.093 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.061 4.061 22 C 0.600 3.400 23 O -0.524 6.524 24 N -0.607 5.607 25 C 0.081 3.919 26 C 0.048 3.952 27 O -0.382 6.382 28 C 0.050 3.950 29 C 0.079 3.921 30 H 0.122 0.878 31 H 0.210 0.790 32 H 0.292 0.708 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -2.631 -8.297 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.020 4.020 3 C -0.271 4.271 4 C 0.107 3.893 5 C -0.297 4.297 6 C -0.015 4.015 7 N 0.088 4.912 8 C -0.479 4.479 9 H 0.131 0.869 10 C -0.169 4.169 11 N -0.441 5.441 12 Si 0.766 3.234 13 H -0.193 1.193 14 H -0.196 1.196 15 H -0.185 1.185 16 C -0.060 4.060 17 C -0.113 4.113 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.119 4.119 21 C -0.065 4.065 22 C 0.388 3.612 23 O -0.400 6.400 24 N -0.342 5.342 25 C -0.043 4.043 26 C -0.030 4.030 27 O -0.301 6.301 28 C -0.027 4.027 29 C -0.044 4.044 30 H 0.140 0.860 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.474 -2.981 -7.379 7.972 hybrid contribution 0.994 0.087 0.768 1.259 sum 1.468 -2.895 -6.610 7.364 Atomic orbital electron populations 1.81143 1.12005 1.09054 1.13306 1.25213 0.91885 0.92934 0.91991 1.17004 0.84541 0.99658 1.25851 1.20651 0.91617 0.91326 0.85677 1.17936 0.92076 1.10854 1.08789 1.24167 0.82487 0.97321 0.97572 1.40176 1.06737 1.22474 1.21789 1.20018 0.89982 1.40400 0.97532 0.86903 1.25696 0.98590 0.96026 0.96581 1.69714 1.20369 1.36455 1.17571 0.85658 0.79352 0.79094 0.79310 1.19331 1.19586 1.18543 1.18648 0.95258 0.95790 0.96347 1.20077 0.96571 0.97218 0.97408 1.20566 0.97036 1.00130 0.98241 1.20724 0.92648 1.01334 1.01309 1.20255 0.98138 0.96663 0.96808 1.18959 0.92319 0.97824 0.97377 1.17546 0.77146 0.80934 0.85535 1.90843 1.59557 1.74791 1.14776 1.47920 1.52177 1.27565 1.06536 1.22306 1.03126 0.98145 0.80701 1.22997 0.92717 0.87240 1.00013 1.87928 1.64488 1.55802 1.21847 1.22984 1.01237 0.97317 0.81198 1.22230 0.95369 0.85439 1.01331 0.85974 0.77355 0.89622 0.86824 0.86841 0.87007 0.86925 0.90515 0.88385 0.87920 0.92923 0.92889 0.87936 0.88012 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.35 18.54 41.84 0.78 -8.57 16 2 C 0.29 5.42 15.36 -22.47 -0.35 5.08 16 3 C -0.26 -4.80 3.76 -104.39 -0.39 -5.19 16 4 C 0.13 2.30 9.49 -38.36 -0.36 1.94 16 5 C -0.29 -5.87 5.92 -104.85 -0.62 -6.49 16 6 C 0.13 3.05 8.36 -15.90 -0.13 2.92 16 7 N -0.25 -5.88 2.87 -59.08 -0.17 -6.05 16 8 C -0.35 -8.08 9.85 -14.98 -0.15 -8.23 16 9 H 0.11 2.43 7.84 -52.48 -0.41 2.02 16 10 C 0.05 1.01 5.41 -17.48 -0.09 0.92 16 11 N -0.81 -19.70 10.81 55.50 0.60 -19.10 16 12 Si 0.94 17.27 29.55 -169.99 -5.02 12.24 16 13 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 14 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 15 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 16 C 0.04 0.91 6.72 -83.79 -0.56 0.35 16 17 C -0.09 -1.70 9.92 -39.40 -0.39 -2.10 16 18 C -0.14 -2.19 10.02 -39.55 -0.40 -2.58 16 19 C -0.14 -2.12 10.04 -39.54 -0.40 -2.52 16 20 C -0.10 -1.64 10.09 -39.38 -0.40 -2.04 16 21 C -0.06 -1.20 6.33 -104.88 -0.66 -1.87 16 22 C 0.60 11.79 4.09 -12.79 -0.05 11.74 16 23 O -0.52 -12.10 15.02 5.19 0.08 -12.02 16 24 N -0.61 -10.16 2.92 -173.74 -0.51 -10.67 16 25 C 0.08 1.11 6.45 -3.52 -0.02 1.09 16 26 C 0.05 0.57 6.98 37.31 0.26 0.83 16 27 O -0.38 -5.18 10.74 -35.23 -0.38 -5.56 16 28 C 0.05 0.64 6.99 37.31 0.26 0.90 16 29 C 0.08 1.23 6.65 -3.54 -0.02 1.21 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.21 5.03 2.97 -52.49 -0.16 4.88 16 32 H 0.29 6.73 8.31 -40.82 -0.34 6.40 16 33 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.28 6.33 -51.93 -0.33 0.95 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.10 1.71 7.06 -51.93 -0.37 1.35 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -28.29 375.84 -8.49 -36.78 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.05 Total: 11.32 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -4.48 Total: -4.04 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.70 Total: -44.39 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.30 Total: -17.58 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.02 Total: 12.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.29 -8.49 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409379416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.684 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds