Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38522 * 119.99626 * 155.70487 * 3 2 1 5 5 C 1.41185 * 120.00101 * 171.04229 * 4 3 2 6 6 C 1.38230 * 126.86998 * 342.37722 * 5 4 3 7 7 N 1.35585 * 109.43753 * 179.97438 * 6 5 4 8 8 C 1.36880 * 124.72579 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99639 * 153.35358 * 8 7 6 10 10 C 1.39097 * 120.00404 * 333.35319 * 8 7 6 11 11 N 1.31264 * 119.99539 * 356.81607 * 10 8 7 12 12 Si 1.86804 * 120.00464 * 176.81832 * 10 8 7 13 13 H 1.48500 * 109.46914 * 89.99837 * 12 10 8 14 14 H 1.48500 * 109.47247 * 210.00107 * 12 10 8 15 15 H 1.48503 * 109.46486 * 329.99768 * 12 10 8 16 16 C 1.38472 * 110.54665 * 359.97438 * 7 6 5 17 17 C 1.39018 * 132.90972 * 180.02562 * 16 7 6 18 18 C 1.37935 * 119.95827 * 179.31283 * 17 16 7 19 19 C 1.38625 * 120.59446 * 0.53923 * 18 17 16 20 20 C 1.37959 * 120.24436 * 359.64776 * 19 18 17 21 21 C 1.39068 * 119.69281 * 359.97438 * 20 19 18 22 22 C 1.46829 * 120.00261 * 335.70208 * 3 2 1 23 23 O 1.21694 * 120.00312 * 282.53722 * 22 3 2 24 24 N 1.34777 * 120.00236 * 102.54011 * 22 3 2 25 25 C 1.47169 * 120.93932 * 356.22614 * 24 22 3 26 26 C 1.53300 * 108.37780 * 230.47539 * 25 24 22 27 27 O 1.42963 * 109.26289 * 307.77538 * 26 25 24 28 28 C 1.42966 * 114.16708 * 62.55195 * 27 26 25 29 29 C 1.47148 * 120.98683 * 176.24871 * 24 22 3 30 30 H 1.08001 * 120.00318 * 351.03722 * 4 3 2 31 31 H 1.07999 * 125.28336 * 359.95487 * 6 5 4 32 32 H 0.97007 * 119.99762 * 180.02562 * 11 10 8 33 33 H 1.07995 * 120.01929 * 359.96399 * 17 16 7 34 34 H 1.07996 * 119.70201 * 180.16040 * 18 17 16 35 35 H 1.08004 * 119.87365 * 179.62158 * 19 18 17 36 36 H 1.07997 * 120.15632 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.64431 * 110.78355 * 25 24 22 38 38 H 1.08998 * 109.72893 * 350.22161 * 25 24 22 39 39 H 1.08991 * 109.51502 * 187.82349 * 26 25 24 40 40 H 1.09004 * 109.50896 * 67.72210 * 26 25 24 41 41 H 1.09004 * 109.50877 * 57.34119 * 28 27 26 42 42 H 1.08999 * 109.51284 * 177.44144 * 28 27 26 43 43 H 1.09005 * 109.68433 * 9.75335 * 29 24 22 44 44 H 1.08998 * 109.68569 * 249.20104 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 1.0944 -0.4936 5 6 4.6590 1.1802 -0.3232 6 6 5.4304 0.4666 0.5747 7 7 6.7307 0.8255 0.4374 8 6 7.7635 0.3112 1.1739 9 1 8.7625 0.2930 0.7638 10 6 7.5265 -0.1878 2.4505 11 7 6.3251 -0.1088 2.9734 12 14 8.9179 -0.9704 3.4207 13 1 9.6069 0.0704 4.2252 14 1 8.3664 -2.0109 4.3254 15 1 9.8863 -1.5928 2.4826 16 6 6.8682 1.7848 -0.5517 17 6 7.9672 2.4636 -1.0656 18 6 7.7974 3.3774 -2.0848 19 6 6.5358 3.6362 -2.5975 20 6 5.4333 2.9748 -2.0972 21 6 5.5927 2.0454 -1.0750 22 6 3.3027 -1.1579 0.5232 23 8 3.4090 -1.3192 1.7247 24 7 3.8596 -2.0429 -0.3272 25 6 3.6747 -1.9141 -1.7815 26 6 3.2084 -3.2671 -2.3312 27 8 4.1066 -4.2892 -1.8925 28 6 4.1535 -4.4576 -0.4735 29 6 4.6694 -3.1660 0.1711 30 1 2.7296 1.8815 -1.0089 31 1 5.0557 -0.2634 1.2769 32 1 6.1599 -0.4565 3.8638 33 1 8.9545 2.2679 -0.6743 34 1 8.6544 3.9006 -2.4827 35 1 6.4155 4.3585 -3.3914 36 1 4.4510 3.1778 -2.4974 37 1 4.6195 -1.6344 -2.2477 38 1 2.9222 -1.1538 -1.9908 39 1 3.1989 -3.2338 -3.4206 40 1 2.2047 -3.4825 -1.9647 41 1 3.1534 -4.6768 -0.0997 42 1 4.8233 -5.2813 -0.2266 43 1 4.5755 -3.2338 1.2550 44 1 5.7144 -3.0131 -0.0984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409379416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = 20.549370 kcal Electronic energy + Delta-G solvation = -31654.400837 eV Core-core repulsion = 27537.464918 eV Total energy + Delta-G solvation = -4116.935919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.23314 -41.20673 -39.32586 -37.94900 -37.55512 -35.92967 -35.53321 -34.45217 -32.59444 -31.96298 -30.53462 -29.39366 -28.85579 -27.37636 -25.29509 -24.82536 -23.42574 -23.34174 -22.37883 -21.17655 -20.36600 -19.58979 -18.91074 -17.95926 -17.62098 -17.07932 -16.93619 -16.58051 -16.31024 -16.10882 -16.06092 -15.84974 -15.56743 -15.41706 -15.06797 -14.73395 -14.55413 -14.49960 -14.38502 -14.05585 -13.75045 -13.61408 -13.46234 -13.39131 -13.14125 -12.85545 -12.80844 -12.77344 -12.35574 -12.32686 -12.23896 -12.04692 -11.70102 -11.68074 -11.47352 -11.16475 -10.92874 -10.79903 -9.75919 -9.53752 -9.02983 -8.76243 -8.23480 -6.43079 -0.28310 0.52441 1.01862 1.33412 1.39530 1.46300 1.49489 1.73430 2.00686 2.09136 2.12461 2.55933 2.83160 2.87592 2.92422 3.23692 3.29614 3.74111 3.80197 4.02273 4.03729 4.13018 4.21832 4.25543 4.29761 4.37178 4.37851 4.52849 4.64666 4.66127 4.72788 4.79667 4.81979 4.89773 4.97519 4.99884 5.08664 5.24900 5.29213 5.32263 5.41987 5.52010 5.69043 5.76673 5.85613 6.10087 6.11415 6.28588 6.35296 6.43495 6.66031 6.90681 7.20192 7.28677 8.27855 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.007538 B = 0.005507 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3713.543009 B = 5082.822551 C = 6703.773266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.303 3.697 3 C -0.259 4.259 4 C 0.144 3.856 5 C -0.294 4.294 6 C 0.107 3.893 7 N -0.277 5.277 8 C -0.374 4.374 9 H 0.117 0.883 10 C 0.006 3.994 11 N -0.852 5.852 12 Si 1.006 2.994 13 H -0.265 1.265 14 H -0.274 1.274 15 H -0.250 1.250 16 C 0.008 3.992 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.132 4.132 20 C -0.100 4.100 21 C -0.077 4.077 22 C 0.592 3.408 23 O -0.570 6.570 24 N -0.604 5.604 25 C 0.077 3.923 26 C 0.051 3.949 27 O -0.390 6.390 28 C 0.060 3.940 29 C 0.078 3.922 30 H 0.162 0.838 31 H 0.193 0.807 32 H 0.287 0.713 33 H 0.113 0.887 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -1.514 -11.361 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.007 4.007 3 C -0.269 4.269 4 C 0.120 3.880 5 C -0.300 4.300 6 C -0.042 4.042 7 N 0.065 4.935 8 C -0.502 4.502 9 H 0.134 0.866 10 C -0.203 4.203 11 N -0.482 5.482 12 Si 0.826 3.174 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.173 1.173 16 C -0.095 4.095 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.081 4.081 22 C 0.382 3.618 23 O -0.450 6.450 24 N -0.337 5.337 25 C -0.045 4.045 26 C -0.026 4.026 27 O -0.308 6.308 28 C -0.017 4.017 29 C -0.045 4.045 30 H 0.179 0.821 31 H 0.210 0.790 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.163 0.837 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.556 -1.870 -10.505 10.684 hybrid contribution 0.958 -0.136 1.542 1.820 sum 1.514 -2.006 -8.963 9.309 Atomic orbital electron populations 1.81154 1.12293 1.09576 1.13829 1.25106 0.91661 0.92460 0.91519 1.16998 0.84407 0.99776 1.25683 1.20939 0.90617 0.91576 0.84857 1.18133 0.93033 1.10498 1.08321 1.24175 0.83275 0.98239 0.98479 1.40308 1.06663 1.23682 1.22842 1.20294 0.90478 1.41325 0.98073 0.86581 1.26581 1.00515 0.96051 0.97198 1.69858 1.22305 1.38423 1.17583 0.84743 0.76708 0.78097 0.77900 1.18994 1.19842 1.17299 1.19185 0.97116 0.96514 0.96677 1.20333 0.96038 0.98462 0.98910 1.21045 0.98874 0.98284 0.96313 1.21249 0.91634 1.00854 1.01260 1.20683 1.00360 0.95313 0.95448 1.19212 0.91355 0.98934 0.98570 1.17844 0.77266 0.81491 0.85231 1.90816 1.61554 1.75879 1.16774 1.48018 1.51047 1.26954 1.07679 1.22524 1.03261 1.00019 0.78718 1.23140 0.92372 0.85395 1.01728 1.87924 1.64971 1.56115 1.21838 1.22976 1.01897 0.96032 0.80801 1.22262 0.94875 0.86858 1.00530 0.82108 0.79036 0.90222 0.86886 0.83348 0.82758 0.83742 0.91027 0.87464 0.84745 0.92524 0.92439 0.85490 0.90091 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.70 18.54 19.00 0.35 -18.35 16 2 C 0.30 11.07 15.36 88.33 1.36 12.42 16 3 C -0.26 -9.50 3.76 -19.72 -0.07 -9.57 16 4 C 0.14 4.89 9.49 23.06 0.22 5.11 16 5 C -0.29 -11.92 5.92 -20.01 -0.12 -12.04 16 6 C 0.11 5.11 8.36 84.11 0.70 5.81 16 7 N -0.28 -13.40 2.87 -340.84 -0.98 -14.38 16 8 C -0.37 -18.18 9.85 84.11 0.83 -17.35 16 9 H 0.12 5.27 7.84 -2.91 -0.02 5.25 16 10 C 0.01 0.27 5.41 84.98 0.46 0.73 16 11 N -0.85 -44.26 10.81 21.68 0.23 -44.03 16 12 Si 1.01 36.95 29.55 68.60 2.03 38.98 16 13 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 14 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 16 C 0.01 0.35 6.72 38.79 0.26 0.61 16 17 C -0.12 -4.24 9.92 22.39 0.22 -4.02 16 18 C -0.13 -3.50 10.02 22.29 0.22 -3.28 16 19 C -0.13 -3.33 10.04 22.30 0.22 -3.11 16 20 C -0.10 -2.92 10.09 22.40 0.23 -2.69 16 21 C -0.08 -2.96 6.33 -20.03 -0.13 -3.09 16 22 C 0.59 24.19 4.09 86.49 0.35 24.54 16 23 O -0.57 -28.10 15.02 -4.33 -0.07 -28.17 16 24 N -0.60 -20.81 2.92 -821.82 -2.40 -23.20 16 25 C 0.08 2.08 6.45 86.35 0.56 2.64 16 26 C 0.05 1.11 6.98 72.08 0.50 1.62 16 27 O -0.39 -9.98 10.74 -148.98 -1.60 -11.59 16 28 C 0.06 1.51 6.99 72.08 0.50 2.01 16 29 C 0.08 2.55 6.65 86.35 0.57 3.12 16 30 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.19 9.89 2.97 -2.91 -0.01 9.89 16 32 H 0.29 14.30 8.31 -92.70 -0.77 13.53 16 33 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.11 2.66 6.33 -2.39 -0.02 2.65 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.08 2.98 7.06 -2.38 -0.02 2.97 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -66.14 375.84 5.52 -60.62 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 1.05 Total: 36.63 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.89 Total: 3.47 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -2.79 Total: -99.95 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.67 Total: -39.75 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Total: -66.14 5.52 -60.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409379416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.171 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds