Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47099 * 2 1 4 4 O 1.42903 * 109.47185 * 120.00029 * 2 1 3 5 5 C 1.42899 * 113.99878 * 270.00089 * 4 2 1 6 6 C 1.52999 * 109.46865 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27560 * 304.36291 * 6 5 4 8 8 C 1.54951 * 110.39208 * 182.21483 * 6 5 4 9 9 C 1.55455 * 100.98867 * 204.64879 * 8 6 5 10 10 C 1.54378 * 102.18506 * 34.03762 * 9 8 6 11 11 O 1.43233 * 107.66775 * 338.74109 * 10 9 8 12 12 C 1.50695 * 109.47183 * 240.00335 * 2 1 3 13 13 O 1.21293 * 119.99781 * 253.90090 * 12 2 1 14 14 N 1.34780 * 120.00490 * 73.89894 * 12 2 1 15 15 C 1.46500 * 119.99586 * 5.29182 * 14 12 2 16 16 C 1.50696 * 109.47243 * 95.88255 * 15 14 12 17 17 H 1.07996 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99970 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99707 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47151 * 90.00312 * 20 18 16 22 22 H 1.48506 * 109.46955 * 209.99800 * 20 18 16 23 23 H 1.48494 * 109.47436 * 329.99922 * 20 18 16 24 24 C 1.40029 * 120.00052 * 185.28949 * 14 12 2 25 25 C 1.38850 * 120.03850 * 173.04465 * 24 14 12 26 26 C 1.38119 * 119.95185 * 179.72273 * 25 24 14 27 27 C 1.38478 * 120.04217 * 0.54930 * 26 25 24 28 28 F 1.35097 * 119.95440 * 179.74145 * 27 26 25 29 29 C 1.38474 * 120.09240 * 359.72768 * 27 26 25 30 30 C 1.38117 * 120.04245 * 359.97438 * 29 27 26 31 31 H 1.09003 * 109.46858 * 55.33903 * 1 2 3 32 32 H 1.09003 * 109.47206 * 175.33906 * 1 2 3 33 33 H 1.09001 * 109.47389 * 295.34249 * 1 2 3 34 34 H 1.08997 * 109.47228 * 60.00188 * 5 4 2 35 35 H 1.08999 * 109.47420 * 300.00132 * 5 4 2 36 36 H 1.08994 * 111.12708 * 322.51487 * 8 6 5 37 37 H 1.09003 * 111.12291 * 86.67869 * 8 6 5 38 38 H 1.09006 * 110.83255 * 275.89317 * 9 8 6 39 39 H 1.08999 * 110.92706 * 152.22819 * 9 8 6 40 40 H 1.09003 * 109.83458 * 219.18321 * 10 9 8 41 41 H 1.08998 * 109.82918 * 98.30342 * 10 9 8 42 42 H 1.09002 * 109.46854 * 215.88192 * 15 14 12 43 43 H 1.09000 * 109.47342 * 335.88374 * 15 14 12 44 44 H 0.97007 * 120.00151 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.02992 * 359.97438 * 25 24 14 46 46 H 1.07993 * 119.98265 * 180.29707 * 26 25 24 47 47 H 1.07991 * 119.98292 * 179.97438 * 29 27 26 48 48 H 1.07996 * 120.02253 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6408 3.4792 7 1 2.0221 -1.4613 3.6903 8 6 2.8725 0.2581 4.7305 9 6 3.9407 -0.5397 5.5300 10 6 4.8094 -1.1401 4.4038 11 8 4.0236 -1.1485 3.2063 12 6 2.0323 -0.7103 -1.2305 13 8 2.5091 -1.8217 -1.1369 14 7 1.9518 -0.1108 -2.4349 15 6 1.4842 1.2741 -2.5339 16 6 2.6700 2.2032 -2.5728 17 1 3.6718 1.8023 -2.5279 18 6 2.4760 3.5650 -2.6658 19 7 1.2561 4.0533 -2.7201 20 14 3.9460 4.7166 -2.7148 21 1 4.3609 4.9301 -4.1246 22 1 3.5750 6.0191 -2.1055 23 1 5.0707 4.1164 -1.9533 24 6 2.3152 -0.8115 -3.5915 25 6 2.0976 -0.2490 -4.8422 26 6 2.4619 -0.9393 -5.9816 27 6 3.0334 -2.1963 -5.8777 28 9 3.3844 -2.8722 -6.9936 29 6 3.2460 -2.7615 -4.6315 30 6 2.8887 -2.0718 -3.4894 31 1 -0.3633 0.5845 -0.8453 32 1 -0.3634 -1.0243 -0.0835 33 1 -0.3634 0.4399 0.9288 34 1 1.2538 0.6546 2.5589 35 1 2.9319 0.9514 2.0450 36 1 3.2441 1.2460 4.4584 37 1 1.9383 0.3314 5.2872 38 1 3.4739 -1.3273 6.1215 39 1 4.5300 0.1243 6.1623 40 1 5.0989 -2.1585 4.6631 41 1 5.6997 -0.5286 4.2577 42 1 0.8976 1.3952 -3.4446 43 1 0.8651 1.5113 -1.6687 44 1 1.1196 5.0114 -2.7859 45 1 1.6475 0.7294 -4.9239 46 1 2.2973 -0.5002 -6.9544 47 1 3.6915 -3.7421 -4.5525 48 1 3.0543 -2.5131 -2.5177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584906821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = -128.137746 kcal Electronic energy + Delta-G solvation = -31676.331999 eV Core-core repulsion = 27225.719642 eV Total energy + Delta-G solvation = -4450.612357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 351.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.40787 -40.42242 -39.55327 -38.15916 -36.92710 -35.32719 -32.76640 -32.35074 -31.89703 -30.60711 -30.17781 -28.76338 -27.36650 -25.62587 -24.10375 -23.49492 -22.37490 -21.85472 -21.38404 -21.31538 -19.22614 -17.38957 -17.19157 -17.05587 -16.92516 -16.36633 -16.05163 -15.93409 -15.27865 -15.20144 -15.12294 -14.74651 -14.73148 -14.36084 -13.95131 -13.74750 -13.47599 -13.21846 -13.03866 -12.81968 -12.63599 -12.44381 -12.30622 -12.12947 -12.00404 -11.89576 -11.80968 -11.52620 -11.43833 -11.22075 -11.16219 -11.04502 -10.88878 -10.82202 -10.61857 -10.32056 -10.13488 -9.54515 -9.50876 -9.17847 -8.76752 -8.61902 -8.56046 -7.21966 -6.34851 -4.43642 1.60735 1.76992 3.02776 3.14983 3.18138 3.22647 3.28156 3.70862 3.99989 4.19009 4.27110 4.27834 4.64973 4.76594 4.79417 4.88412 4.99030 5.02564 5.10005 5.18684 5.30104 5.32176 5.32526 5.40365 5.44289 5.47777 5.50726 5.60141 5.69171 5.78594 5.80125 5.84780 5.89077 5.95249 6.01390 6.04640 6.27004 6.38624 6.59279 6.67752 6.72936 6.82762 6.97129 7.00520 7.14697 7.33187 7.58733 7.68493 7.80273 7.98338 8.58797 8.71689 9.25188 10.71152 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.003530 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.051084 B = 7930.977234 C =10119.456849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.074 3.926 3 H 0.104 0.896 4 O -0.352 6.352 5 C 0.061 3.939 6 C 0.086 3.914 7 H 0.078 0.922 8 C -0.150 4.150 9 C -0.154 4.154 10 C 0.047 3.953 11 O -0.365 6.365 12 C 0.523 3.477 13 O -0.518 6.518 14 N -0.533 5.533 15 C 0.219 3.781 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.070 3.930 19 N -0.888 5.888 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.168 3.832 25 C -0.118 4.118 26 C -0.133 4.133 27 C 0.049 3.951 28 F -0.153 7.153 29 C -0.136 4.136 30 C -0.155 4.155 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.268 0.732 45 H 0.146 0.854 46 H 0.131 0.869 47 H 0.128 0.872 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -5.664 10.731 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.270 6.270 5 C -0.017 4.017 6 C 0.028 3.972 7 H 0.096 0.904 8 C -0.188 4.188 9 C -0.192 4.192 10 C -0.030 4.030 11 O -0.284 6.284 12 C 0.312 3.688 13 O -0.396 6.396 14 N -0.253 5.253 15 C 0.101 3.899 16 C -0.582 4.582 17 H 0.082 0.918 18 C -0.134 4.134 19 N -0.526 5.526 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.196 1.196 24 C 0.071 3.929 25 C -0.138 4.138 26 C -0.153 4.153 27 C 0.029 3.971 28 F -0.132 7.132 29 C -0.155 4.155 30 C -0.174 4.174 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.164 0.836 46 H 0.149 0.851 47 H 0.146 0.854 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.563 -6.291 10.639 12.372 hybrid contribution 0.739 1.235 -0.201 1.453 sum 0.176 -5.056 10.437 11.599 Atomic orbital electron populations 1.22277 0.93621 1.03224 1.03634 1.21866 0.94901 0.97354 0.84543 0.87879 1.88017 1.86590 1.33646 1.18782 1.22739 0.99619 0.92976 0.86322 1.22966 0.85956 0.95482 0.92754 0.90393 1.23287 1.00084 0.99729 0.95715 1.23135 0.97618 1.00077 0.98369 1.23131 0.94690 1.00619 0.84588 1.88605 1.23284 1.85421 1.31106 1.20426 0.78318 0.85672 0.84342 1.90253 1.44242 1.20224 1.84920 1.45940 1.60114 1.15641 1.03606 1.19915 0.96374 0.73670 0.99947 1.21398 0.92990 0.91039 1.52746 0.91759 1.24891 0.96199 0.97982 0.94312 1.69902 1.20059 1.13795 1.48846 0.86483 0.82489 0.79873 0.78704 1.20237 1.20919 1.19640 1.18048 0.96414 0.91846 0.86547 1.20922 1.01914 1.01176 0.89815 1.20832 1.01418 0.93604 0.99437 1.17717 1.04493 0.92518 0.82333 1.91419 1.90551 1.79982 1.51240 1.21058 1.02747 1.00958 0.90775 1.22733 0.98665 0.94146 1.01868 0.89862 0.91695 0.91400 0.91853 0.92147 0.89883 0.89552 0.90493 0.89949 0.91554 0.91404 0.93491 0.92711 0.92249 0.83642 0.85144 0.85393 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.22 37.16 0.34 -2.20 16 2 C 0.07 1.33 2.28 -27.89 -0.06 1.27 16 3 H 0.10 1.91 6.88 -51.92 -0.36 1.56 16 4 O -0.35 -6.30 9.55 -58.11 -0.55 -6.85 16 5 C 0.06 0.84 5.46 37.16 0.20 1.05 16 6 C 0.09 1.07 3.72 -25.70 -0.10 0.97 16 7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.15 -1.32 6.58 -24.40 -0.16 -1.48 16 9 C -0.15 -1.22 7.03 -24.71 -0.17 -1.39 16 10 C 0.05 0.50 7.79 37.88 0.30 0.79 16 11 O -0.36 -5.52 11.03 -36.86 -0.41 -5.93 16 12 C 0.52 10.84 6.92 -10.99 -0.08 10.76 16 13 O -0.52 -11.61 12.96 -13.97 -0.18 -11.79 16 14 N -0.53 -11.14 2.69 -114.72 -0.31 -11.44 16 15 C 0.22 4.82 4.19 -5.20 -0.02 4.80 16 16 C -0.54 -13.41 9.36 -34.44 -0.32 -13.73 16 17 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 18 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -22.69 13.29 55.43 0.74 -21.95 16 20 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.17 3.42 6.46 -83.66 -0.54 2.88 16 25 C -0.12 -2.23 9.25 -39.40 -0.36 -2.60 16 26 C -0.13 -2.28 10.02 -39.54 -0.40 -2.68 16 27 C 0.05 0.86 7.30 -39.41 -0.29 0.57 16 28 F -0.15 -2.57 17.26 2.25 0.04 -2.53 16 29 C -0.14 -2.36 10.02 -39.54 -0.40 -2.76 16 30 C -0.15 -3.01 9.05 -39.40 -0.36 -3.37 16 31 H 0.08 1.28 6.19 -51.93 -0.32 0.96 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 34 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 35 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.07 6.27 -51.93 -0.33 0.74 16 43 H 0.06 1.18 4.40 -51.93 -0.23 0.95 16 44 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.15 2.81 6.14 -52.48 -0.32 2.49 16 46 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 48 H 0.19 3.87 4.53 -56.24 -0.25 3.61 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -29.17 393.12 -9.09 -38.26 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.81 Total: 7.00 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.51 Total: -5.48 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.43 Total: -33.40 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.14 Total: -24.57 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.17 -9.09 -38.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584906821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.875 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds