Wall clock time and date at job start Tue Mar 31 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47099 * 2 1 4 4 O 1.42903 * 109.47185 * 120.00029 * 2 1 3 5 5 C 1.42899 * 113.99878 * 270.00089 * 4 2 1 6 6 C 1.52999 * 109.46865 * 179.97438 * 5 4 2 7 7 H 1.08999 * 110.27560 * 304.36291 * 6 5 4 8 8 C 1.54951 * 110.39208 * 182.21483 * 6 5 4 9 9 C 1.55455 * 100.98867 * 204.64879 * 8 6 5 10 10 C 1.54378 * 102.18506 * 34.03762 * 9 8 6 11 11 O 1.43233 * 107.66775 * 338.74109 * 10 9 8 12 12 C 1.50695 * 109.47183 * 240.00335 * 2 1 3 13 13 O 1.21293 * 119.99781 * 253.90090 * 12 2 1 14 14 N 1.34780 * 120.00490 * 73.89894 * 12 2 1 15 15 C 1.46500 * 119.99586 * 5.29182 * 14 12 2 16 16 C 1.50696 * 109.47243 * 95.88255 * 15 14 12 17 17 H 1.07996 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99970 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00096 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99707 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47151 * 90.00312 * 20 18 16 22 22 H 1.48506 * 109.46955 * 209.99800 * 20 18 16 23 23 H 1.48494 * 109.47436 * 329.99922 * 20 18 16 24 24 C 1.40029 * 120.00052 * 185.28949 * 14 12 2 25 25 C 1.38850 * 120.03850 * 173.04465 * 24 14 12 26 26 C 1.38119 * 119.95185 * 179.72273 * 25 24 14 27 27 C 1.38478 * 120.04217 * 0.54930 * 26 25 24 28 28 F 1.35097 * 119.95440 * 179.74145 * 27 26 25 29 29 C 1.38474 * 120.09240 * 359.72768 * 27 26 25 30 30 C 1.38117 * 120.04245 * 359.97438 * 29 27 26 31 31 H 1.09003 * 109.46858 * 55.33903 * 1 2 3 32 32 H 1.09003 * 109.47206 * 175.33906 * 1 2 3 33 33 H 1.09001 * 109.47389 * 295.34249 * 1 2 3 34 34 H 1.08997 * 109.47228 * 60.00188 * 5 4 2 35 35 H 1.08999 * 109.47420 * 300.00132 * 5 4 2 36 36 H 1.08994 * 111.12708 * 322.51487 * 8 6 5 37 37 H 1.09003 * 111.12291 * 86.67869 * 8 6 5 38 38 H 1.09006 * 110.83255 * 275.89317 * 9 8 6 39 39 H 1.08999 * 110.92706 * 152.22819 * 9 8 6 40 40 H 1.09003 * 109.83458 * 219.18321 * 10 9 8 41 41 H 1.08998 * 109.82918 * 98.30342 * 10 9 8 42 42 H 1.09002 * 109.46854 * 215.88192 * 15 14 12 43 43 H 1.09000 * 109.47342 * 335.88374 * 15 14 12 44 44 H 0.97007 * 120.00151 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.02992 * 359.97438 * 25 24 14 46 46 H 1.07993 * 119.98265 * 180.29707 * 26 25 24 47 47 H 1.07991 * 119.98292 * 179.97438 * 29 27 26 48 48 H 1.07996 * 120.02253 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6408 3.4792 7 1 2.0221 -1.4613 3.6903 8 6 2.8725 0.2581 4.7305 9 6 3.9407 -0.5397 5.5300 10 6 4.8094 -1.1401 4.4038 11 8 4.0236 -1.1485 3.2063 12 6 2.0323 -0.7103 -1.2305 13 8 2.5091 -1.8217 -1.1369 14 7 1.9518 -0.1108 -2.4349 15 6 1.4842 1.2741 -2.5339 16 6 2.6700 2.2032 -2.5728 17 1 3.6718 1.8023 -2.5279 18 6 2.4760 3.5650 -2.6658 19 7 1.2561 4.0533 -2.7201 20 14 3.9460 4.7166 -2.7148 21 1 4.3609 4.9301 -4.1246 22 1 3.5750 6.0191 -2.1055 23 1 5.0707 4.1164 -1.9533 24 6 2.3152 -0.8115 -3.5915 25 6 2.0976 -0.2490 -4.8422 26 6 2.4619 -0.9393 -5.9816 27 6 3.0334 -2.1963 -5.8777 28 9 3.3844 -2.8722 -6.9936 29 6 3.2460 -2.7615 -4.6315 30 6 2.8887 -2.0718 -3.4894 31 1 -0.3633 0.5845 -0.8453 32 1 -0.3634 -1.0243 -0.0835 33 1 -0.3634 0.4399 0.9288 34 1 1.2538 0.6546 2.5589 35 1 2.9319 0.9514 2.0450 36 1 3.2441 1.2460 4.4584 37 1 1.9383 0.3314 5.2872 38 1 3.4739 -1.3273 6.1215 39 1 4.5300 0.1243 6.1623 40 1 5.0989 -2.1585 4.6631 41 1 5.6997 -0.5286 4.2577 42 1 0.8976 1.3952 -3.4446 43 1 0.8651 1.5113 -1.6687 44 1 1.1196 5.0114 -2.7859 45 1 1.6475 0.7294 -4.9239 46 1 2.2973 -0.5002 -6.9544 47 1 3.6915 -3.7421 -4.5525 48 1 3.0543 -2.5131 -2.5177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584906821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:27 Heat of formation + Delta-G solvation = -142.818886 kcal Electronic energy + Delta-G solvation = -31676.968621 eV Core-core repulsion = 27225.719642 eV Total energy + Delta-G solvation = -4451.248979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 351.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.79297 -41.98392 -40.50906 -39.54947 -38.31701 -37.00354 -34.64433 -33.35374 -32.97159 -32.07170 -31.24462 -30.26888 -29.10780 -26.64312 -25.59599 -25.11619 -23.87991 -22.94509 -22.50277 -22.27082 -20.73187 -18.87398 -18.80711 -18.60772 -18.00543 -17.89773 -17.38606 -17.02595 -16.64519 -16.58182 -16.44394 -16.36685 -15.97407 -15.72896 -15.41211 -15.06075 -14.55643 -14.50312 -14.45905 -14.14369 -14.04938 -13.86991 -13.68418 -13.58175 -13.31436 -13.11493 -13.03124 -12.94020 -12.65886 -12.55147 -12.45616 -12.22759 -12.16137 -12.09556 -11.95058 -11.92346 -11.67973 -10.86681 -10.83888 -10.64868 -10.47351 -10.16694 -10.04801 -8.80638 -8.25111 -6.40494 0.11460 0.31069 1.38310 1.41081 1.45984 1.53346 1.71861 2.36356 2.68145 2.75168 2.89498 3.04516 3.33491 3.40514 3.55919 3.86092 3.88889 3.93757 3.97848 3.98507 4.09201 4.15410 4.26464 4.30904 4.36943 4.38131 4.48174 4.50537 4.57012 4.64876 4.75241 4.81842 4.84076 4.88715 4.95315 4.98433 5.01745 5.06510 5.18275 5.23284 5.24825 5.27234 5.33941 5.61926 5.65930 5.93129 5.99183 6.13167 6.19866 6.33870 6.68687 7.05929 7.30823 8.78651 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.007966 B = 0.003530 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.051084 B = 7930.977234 C =10119.456849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.080 3.920 3 H 0.092 0.908 4 O -0.375 6.375 5 C 0.053 3.947 6 C 0.079 3.921 7 H 0.079 0.921 8 C -0.142 4.142 9 C -0.144 4.144 10 C 0.034 3.966 11 O -0.410 6.410 12 C 0.512 3.488 13 O -0.542 6.542 14 N -0.535 5.535 15 C 0.233 3.767 16 C -0.552 4.552 17 H 0.043 0.957 18 C 0.038 3.962 19 N -0.907 5.907 20 Si 0.947 3.053 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.279 1.279 24 C 0.142 3.858 25 C -0.126 4.126 26 C -0.124 4.124 27 C 0.052 3.948 28 F -0.146 7.146 29 C -0.129 4.129 30 C -0.166 4.166 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.272 0.728 45 H 0.139 0.861 46 H 0.159 0.841 47 H 0.153 0.847 48 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -5.249 11.464 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.110 0.890 4 O -0.294 6.294 5 C -0.023 4.023 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.180 4.180 9 C -0.182 4.182 10 C -0.042 4.042 11 O -0.330 6.330 12 C 0.303 3.697 13 O -0.422 6.422 14 N -0.255 5.255 15 C 0.114 3.886 16 C -0.591 4.591 17 H 0.061 0.939 18 C -0.165 4.165 19 N -0.545 5.545 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.204 1.204 24 C 0.046 3.954 25 C -0.146 4.146 26 C -0.143 4.143 27 C 0.032 3.968 28 F -0.124 7.124 29 C -0.148 4.148 30 C -0.186 4.186 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.157 0.843 46 H 0.176 0.824 47 H 0.171 0.829 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.824 -5.874 11.370 12.824 hybrid contribution 0.879 1.027 -0.483 1.436 sum 0.056 -4.847 10.887 11.917 Atomic orbital electron populations 1.22224 0.91209 1.03492 1.04904 1.21822 0.96599 0.95963 0.83738 0.89020 1.87994 1.86861 1.35045 1.19517 1.23044 1.00876 0.92790 0.85633 1.23153 0.85043 0.96164 0.93487 0.90294 1.23297 1.01653 0.98908 0.94095 1.23137 0.97002 1.00548 0.97493 1.23359 0.94896 1.01402 0.84516 1.88555 1.24767 1.85895 1.33813 1.21053 0.77894 0.85676 0.85086 1.90244 1.45318 1.21256 1.85366 1.45920 1.60229 1.15234 1.04150 1.19671 0.95386 0.73910 0.99682 1.21459 0.92787 0.91852 1.52975 0.93857 1.25413 0.98107 0.98914 0.94029 1.69949 1.21097 1.14239 1.49221 0.85716 0.79858 0.78620 0.78505 1.20100 1.19863 1.20373 1.18367 0.97580 0.92532 0.86928 1.20916 1.02553 1.01143 0.89997 1.21082 0.99948 0.93297 0.99989 1.17737 1.04043 0.92538 0.82454 1.91443 1.90414 1.79809 1.50783 1.21261 1.01730 1.01686 0.90140 1.22611 0.99626 0.94219 1.02135 0.90433 0.91567 0.88488 0.88855 0.93465 0.89892 0.86940 0.89086 0.87900 0.91008 0.91384 0.94244 0.92123 0.91907 0.84349 0.82367 0.82935 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.73 9.22 71.98 0.66 -4.07 16 2 C 0.08 2.91 2.28 29.85 0.07 2.98 16 3 H 0.09 3.52 6.88 -2.38 -0.02 3.50 16 4 O -0.38 -13.69 9.55 -127.11 -1.21 -14.91 16 5 C 0.05 1.47 5.46 71.98 0.39 1.86 16 6 C 0.08 1.92 3.72 31.26 0.12 2.04 16 7 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 8 C -0.14 -2.19 6.58 32.11 0.21 -1.98 16 9 C -0.14 -1.96 7.03 31.91 0.22 -1.74 16 10 C 0.03 0.72 7.79 72.45 0.56 1.28 16 11 O -0.41 -12.67 11.03 -147.42 -1.63 -14.30 16 12 C 0.51 22.02 6.92 87.65 0.61 22.63 16 13 O -0.54 -25.32 12.96 15.59 0.20 -25.12 16 14 N -0.54 -23.12 2.69 -635.25 -1.71 -24.83 16 15 C 0.23 10.47 4.19 85.63 0.36 10.83 16 16 C -0.55 -27.78 9.36 25.60 0.24 -27.54 16 17 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 18 C 0.04 1.87 5.46 84.66 0.46 2.33 16 19 N -0.91 -46.06 13.29 21.45 0.28 -45.77 16 20 Si 0.95 40.48 29.54 68.60 2.03 42.51 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.14 5.90 6.46 38.12 0.25 6.15 16 25 C -0.13 -4.78 9.25 22.39 0.21 -4.57 16 26 C -0.12 -4.07 10.02 22.30 0.22 -3.85 16 27 C 0.05 1.73 7.30 22.38 0.16 1.89 16 28 F -0.15 -4.54 17.26 44.97 0.78 -3.77 16 29 C -0.13 -4.36 10.02 22.30 0.22 -4.14 16 30 C -0.17 -6.59 9.05 22.39 0.20 -6.39 16 31 H 0.08 2.36 6.19 -2.39 -0.01 2.35 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.25 7.79 -2.39 -0.02 2.23 16 34 H 0.09 1.96 7.79 -2.39 -0.02 1.94 16 35 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 37 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.04 1.83 6.27 -2.39 -0.01 1.82 16 43 H 0.06 2.65 4.40 -2.39 -0.01 2.64 16 44 H 0.27 13.09 8.31 -92.70 -0.77 12.32 16 45 H 0.14 5.44 6.14 -2.91 -0.02 5.42 16 46 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 47 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 48 H 0.18 7.45 4.53 -62.27 -0.28 7.17 16 Total: -1.00 -63.60 393.12 4.63 -58.97 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.71 Total: 29.50 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.18 Total: -2.29 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.43 Total: -70.60 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -2.64 Total: -54.32 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -63.60 4.63 -58.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584906821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.848 kcal (2) G-P(sol) polarization free energy of solvation -63.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds