Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48490 * 109.47129 * 269.99614 * 3 2 1 5 5 H 1.48497 * 109.46826 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47114 * 149.99596 * 3 2 1 7 7 C 1.37879 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47361 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47302 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54301 * 68.37577 * 11 10 9 13 13 O 1.42098 * 110.54294 * 291.62444 * 11 10 9 14 14 N 1.65598 * 104.45085 * 180.02562 * 11 10 9 15 15 C 1.46879 * 125.61780 * 269.97450 * 14 11 10 16 16 C 1.54121 * 107.70240 * 181.74584 * 15 14 11 17 17 H 1.09001 * 114.10185 * 144.25296 * 16 15 14 18 18 C 1.54132 * 108.57515 * 271.80219 * 16 15 14 19 19 N 1.47378 * 107.72964 * 128.60798 * 18 16 15 20 20 C 1.39669 * 111.00391 * 124.82601 * 19 18 16 21 21 C 1.38908 * 120.07548 * 216.08726 * 20 19 18 22 22 C 1.38108 * 119.92320 * 179.72218 * 21 20 19 23 23 C 1.38287 * 120.07553 * 0.27376 * 22 21 20 24 24 C 1.38291 * 120.14810 * 0.02562 * 23 22 21 25 25 C 1.38100 * 120.07383 * 359.97438 * 24 23 22 26 26 C 1.47715 * 108.49192 * 2.60347 * 19 18 16 27 27 C 1.54444 * 105.27867 * 335.37960 * 26 19 18 28 28 H 1.09004 * 114.62579 * 159.93000 * 27 26 19 29 29 C 1.47307 * 125.61614 * 90.00022 * 14 11 10 30 30 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46794 * 60.00521 * 9 7 2 32 32 H 1.09002 * 109.47276 * 300.00289 * 9 7 2 33 33 H 1.08999 * 109.47155 * 60.00090 * 10 9 7 34 34 H 1.09002 * 109.47076 * 300.00307 * 10 9 7 35 35 H 1.09006 * 109.81154 * 62.19435 * 15 14 11 36 36 H 1.08996 * 109.81101 * 301.29438 * 15 14 11 37 37 H 1.09003 * 109.80437 * 9.05330 * 18 16 15 38 38 H 1.08999 * 109.86113 * 248.19548 * 18 16 15 39 39 H 1.07997 * 120.04091 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.96123 * 180.24820 * 22 21 20 41 41 H 1.07997 * 119.92517 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.95686 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.03383 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.28065 * 94.33554 * 26 19 18 45 45 H 1.09008 * 110.28054 * 216.42992 * 26 19 18 46 46 H 1.08999 * 110.27895 * 37.09580 * 29 14 11 47 47 H 1.09005 * 110.35706 * 275.04342 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0011 12 8 0.6657 -5.4199 -1.2366 13 8 0.6629 -5.4195 1.2373 14 7 2.5204 -6.3927 0.0033 15 6 3.1325 -6.9926 -1.1896 16 6 4.1470 -8.0507 -0.7139 17 1 4.2065 -8.9303 -1.3551 18 6 5.5077 -7.3616 -0.4923 19 7 5.9784 -7.7212 0.8572 20 6 7.2520 -8.2925 0.8075 21 6 7.5883 -9.3205 1.6791 22 6 8.8466 -9.8870 1.6233 23 6 9.7731 -9.4282 0.7049 24 6 9.4436 -8.4007 -0.1601 25 6 8.1872 -7.8298 -0.1096 26 6 5.0036 -8.6526 1.4607 27 6 3.6673 -8.3655 0.7415 28 1 2.9343 -9.1696 0.8069 29 6 3.1310 -6.9930 1.2019 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5572 -0.8898 32 1 0.6240 -2.5568 0.8903 33 1 2.8712 -3.6040 0.8923 34 1 2.8726 -3.6048 -0.8877 35 1 3.6444 -6.2238 -1.7685 36 1 2.3640 -7.4660 -1.8007 37 1 5.3906 -6.2804 -0.5666 38 1 6.2239 -7.7075 -1.2376 39 1 6.8654 -9.6791 2.3968 40 1 9.1075 -10.6890 2.2980 41 1 10.7563 -9.8732 0.6631 42 1 10.1697 -8.0446 -0.8758 43 1 7.9303 -7.0277 -0.7858 44 1 5.3109 -9.6843 1.2894 45 1 4.9071 -8.4587 2.5290 46 1 2.3817 -7.1227 1.9829 47 1 3.9488 -6.3697 1.5635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585114989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = -27.502764 kcal Electronic energy + Delta-G solvation = -28822.285794 eV Core-core repulsion = 24904.136040 eV Total energy + Delta-G solvation = -3918.149753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25803 -39.02883 -36.61929 -36.08162 -35.43989 -33.88687 -31.93934 -31.71709 -31.15484 -30.52322 -28.66863 -26.87764 -25.60746 -24.17427 -22.77564 -22.29165 -21.46955 -20.81472 -20.05506 -18.65083 -18.18358 -17.55044 -16.51484 -16.15144 -15.77875 -15.58372 -15.52252 -15.20760 -15.04496 -14.55828 -14.31972 -14.14781 -13.80891 -13.77402 -13.53335 -13.35089 -12.94333 -12.83633 -12.62768 -12.52906 -12.11909 -11.75752 -11.71704 -11.64802 -11.56992 -11.30770 -11.27133 -11.19072 -11.08632 -11.06331 -10.96138 -10.88785 -10.42163 -10.37728 -10.06898 -9.75996 -9.32273 -9.20608 -8.75635 -8.50309 -8.08850 -6.12384 -4.17883 0.71912 1.12120 1.12750 3.03221 3.26289 3.30802 3.32521 3.35560 3.69611 3.82675 4.07856 4.27659 4.36216 4.40523 4.55196 4.65269 4.68555 4.79820 4.83842 4.88232 4.99735 5.06557 5.14919 5.20487 5.22820 5.25656 5.35212 5.42141 5.45706 5.47310 5.61594 5.64792 5.67267 5.69001 5.75778 5.81966 5.87688 5.97168 6.13193 6.15710 6.29320 6.44473 6.48434 6.49279 6.64758 6.99226 7.29663 7.35714 7.80746 8.17649 8.85502 9.46855 10.98675 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.002613 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.537057 B =10712.437468 C =12203.995852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.607 3.393 12 O -0.962 6.962 13 O -0.961 6.961 14 N -1.017 6.017 15 C 0.131 3.869 16 C -0.116 4.116 17 H 0.106 0.894 18 C 0.041 3.959 19 N -0.474 5.474 20 C 0.116 3.884 21 C -0.166 4.166 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.092 4.092 25 C -0.158 4.158 26 C 0.047 3.953 27 C -0.104 4.104 28 H 0.110 0.890 29 C 0.123 3.877 30 H 0.265 0.735 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.844 -22.724 0.350 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.721 4.721 11 S 2.707 3.293 12 O -0.953 6.953 13 O -0.952 6.952 14 N -0.853 5.853 15 C 0.005 3.995 16 C -0.136 4.136 17 H 0.124 0.876 18 C -0.084 4.084 19 N -0.187 5.187 20 C 0.017 3.983 21 C -0.187 4.187 22 C -0.111 4.111 23 C -0.175 4.175 24 C -0.110 4.110 25 C -0.178 4.178 26 C -0.079 4.079 27 C -0.125 4.125 28 H 0.128 0.872 29 C -0.003 4.003 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.614 -22.249 0.652 27.189 hybrid contribution 1.114 0.786 -0.359 1.410 sum 16.728 -21.463 0.292 27.213 Atomic orbital electron populations 1.69953 1.06117 1.27202 1.49604 1.25071 0.94977 0.99549 0.94907 0.86465 0.79736 0.82837 0.78230 1.20469 1.20993 1.19735 1.20999 0.93060 0.89736 1.52099 0.92050 1.18965 0.92703 0.90595 0.98828 1.30479 1.13686 1.17913 1.10032 1.05280 0.74091 0.75969 0.74005 1.93533 1.71083 1.85239 1.45417 1.93531 1.70911 1.85242 1.45521 1.58851 1.58314 1.56154 1.12031 1.21521 0.95374 0.95240 0.87369 1.23376 0.94532 0.98400 0.97316 0.87621 1.23271 0.95372 1.02060 0.87712 1.60487 1.00831 1.37698 1.19663 1.19186 0.91376 0.92444 0.95342 1.21019 0.98090 0.97704 1.01884 1.20993 0.93092 0.99111 0.97893 1.21046 0.99750 0.98984 0.97693 1.21008 0.95850 0.95800 0.98368 1.20922 0.94037 1.02539 1.00346 1.23116 0.89842 0.94728 1.00246 1.23378 0.96489 0.98461 0.94162 0.87219 1.21931 0.98008 0.92531 0.87801 0.92527 0.94884 0.94862 0.86216 0.86348 0.91319 0.90845 0.88959 0.90983 0.85666 0.86152 0.86382 0.86051 0.85632 0.91570 0.88947 0.89815 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.59 -11.37 6.12 37.16 0.23 -11.15 16 11 S 2.61 47.23 5.65 -107.50 -0.61 46.62 16 12 O -0.96 -19.98 17.60 -57.54 -1.01 -20.99 16 13 O -0.96 -20.03 17.27 -57.54 -0.99 -21.03 16 14 N -1.02 -13.64 3.62 -112.04 -0.41 -14.04 16 15 C 0.13 1.41 6.16 -3.25 -0.02 1.39 16 16 C -0.12 -0.95 4.21 -87.59 -0.37 -1.32 16 17 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 18 C 0.04 0.35 5.13 -2.97 -0.02 0.34 16 19 N -0.47 -4.37 4.80 -168.48 -0.81 -5.18 16 20 C 0.12 1.08 5.77 -83.79 -0.48 0.59 16 21 C -0.17 -1.39 8.66 -39.38 -0.34 -1.73 16 22 C -0.09 -0.70 10.04 -39.61 -0.40 -1.10 16 23 C -0.16 -1.18 10.04 -39.54 -0.40 -1.58 16 24 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 25 C -0.16 -1.41 8.59 -39.38 -0.34 -1.75 16 26 C 0.05 0.36 4.68 -2.62 -0.01 0.35 16 27 C -0.10 -0.88 4.38 -87.29 -0.38 -1.26 16 28 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 29 C 0.12 1.39 6.13 -2.88 -0.02 1.37 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 35 H 0.07 0.68 7.58 -51.93 -0.39 0.28 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.87 7.36 -51.93 -0.38 0.49 16 38 H 0.07 0.55 6.00 -51.93 -0.31 0.24 16 39 H 0.13 0.88 6.44 -52.49 -0.34 0.54 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.03 6.80 -52.48 -0.36 0.67 16 44 H 0.07 0.44 6.53 -51.93 -0.34 0.10 16 45 H 0.09 0.66 8.12 -51.92 -0.42 0.24 16 46 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 47 H 0.08 0.87 7.31 -51.93 -0.38 0.49 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -35.30 383.57 -12.91 -48.22 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.09 Total: -0.19 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -3.49 Total: -29.63 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.48 Total: -45.10 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.01 Total: -42.02 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 47.23 SS G_CDS: -0.61 Total: 46.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.30 -12.91 -48.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585114989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.717 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds