Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48490 * 109.47129 * 269.99614 * 3 2 1 5 5 H 1.48497 * 109.46826 * 29.99706 * 3 2 1 6 6 H 1.48502 * 109.47114 * 149.99596 * 3 2 1 7 7 C 1.37879 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47361 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47302 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54301 * 68.37577 * 11 10 9 13 13 O 1.42098 * 110.54294 * 291.62444 * 11 10 9 14 14 N 1.65598 * 104.45085 * 180.02562 * 11 10 9 15 15 C 1.46879 * 125.61780 * 269.97450 * 14 11 10 16 16 C 1.54121 * 107.70240 * 181.74584 * 15 14 11 17 17 H 1.09001 * 114.10185 * 144.25296 * 16 15 14 18 18 C 1.54132 * 108.57515 * 271.80219 * 16 15 14 19 19 N 1.47378 * 107.72964 * 128.60798 * 18 16 15 20 20 C 1.39669 * 111.00391 * 124.82601 * 19 18 16 21 21 C 1.38908 * 120.07548 * 216.08726 * 20 19 18 22 22 C 1.38108 * 119.92320 * 179.72218 * 21 20 19 23 23 C 1.38287 * 120.07553 * 0.27376 * 22 21 20 24 24 C 1.38291 * 120.14810 * 0.02562 * 23 22 21 25 25 C 1.38100 * 120.07383 * 359.97438 * 24 23 22 26 26 C 1.47715 * 108.49192 * 2.60347 * 19 18 16 27 27 C 1.54444 * 105.27867 * 335.37960 * 26 19 18 28 28 H 1.09004 * 114.62579 * 159.93000 * 27 26 19 29 29 C 1.47307 * 125.61614 * 90.00022 * 14 11 10 30 30 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46794 * 60.00521 * 9 7 2 32 32 H 1.09002 * 109.47276 * 300.00289 * 9 7 2 33 33 H 1.08999 * 109.47155 * 60.00090 * 10 9 7 34 34 H 1.09002 * 109.47076 * 300.00307 * 10 9 7 35 35 H 1.09006 * 109.81154 * 62.19435 * 15 14 11 36 36 H 1.08996 * 109.81101 * 301.29438 * 15 14 11 37 37 H 1.09003 * 109.80437 * 9.05330 * 18 16 15 38 38 H 1.08999 * 109.86113 * 248.19548 * 18 16 15 39 39 H 1.07997 * 120.04091 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.96123 * 180.24820 * 22 21 20 41 41 H 1.07997 * 119.92517 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.95686 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.03383 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.28065 * 94.33554 * 26 19 18 45 45 H 1.09008 * 110.28054 * 216.42992 * 26 19 18 46 46 H 1.08999 * 110.27895 * 37.09580 * 29 14 11 47 47 H 1.09005 * 110.35706 * 275.04342 * 29 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 16 1.3383 -5.2331 0.0011 12 8 0.6657 -5.4199 -1.2366 13 8 0.6629 -5.4195 1.2373 14 7 2.5204 -6.3927 0.0033 15 6 3.1325 -6.9926 -1.1896 16 6 4.1470 -8.0507 -0.7139 17 1 4.2065 -8.9303 -1.3551 18 6 5.5077 -7.3616 -0.4923 19 7 5.9784 -7.7212 0.8572 20 6 7.2520 -8.2925 0.8075 21 6 7.5883 -9.3205 1.6791 22 6 8.8466 -9.8870 1.6233 23 6 9.7731 -9.4282 0.7049 24 6 9.4436 -8.4007 -0.1601 25 6 8.1872 -7.8298 -0.1096 26 6 5.0036 -8.6526 1.4607 27 6 3.6673 -8.3655 0.7415 28 1 2.9343 -9.1696 0.8069 29 6 3.1310 -6.9930 1.2019 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5572 -0.8898 32 1 0.6240 -2.5568 0.8903 33 1 2.8712 -3.6040 0.8923 34 1 2.8726 -3.6048 -0.8877 35 1 3.6444 -6.2238 -1.7685 36 1 2.3640 -7.4660 -1.8007 37 1 5.3906 -6.2804 -0.5666 38 1 6.2239 -7.7075 -1.2376 39 1 6.8654 -9.6791 2.3968 40 1 9.1075 -10.6890 2.2980 41 1 10.7563 -9.8732 0.6631 42 1 10.1697 -8.0446 -0.8758 43 1 7.9303 -7.0277 -0.7858 44 1 5.3109 -9.6843 1.2894 45 1 4.9071 -8.4587 2.5290 46 1 2.3817 -7.1227 1.9829 47 1 3.9488 -6.3697 1.5635 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585114989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = -51.349180 kcal Electronic energy + Delta-G solvation = -28823.319852 eV Core-core repulsion = 24904.136040 eV Total energy + Delta-G solvation = -3919.183812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.145 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.92749 -39.69601 -38.21723 -37.08047 -36.81062 -35.91812 -33.15072 -32.69566 -32.35412 -31.20852 -29.33323 -27.64067 -27.60244 -25.02622 -23.54417 -23.37264 -22.90970 -21.42751 -20.75484 -19.97084 -19.17934 -18.75727 -18.28904 -17.23044 -17.07650 -16.66662 -16.53521 -16.33276 -15.89642 -15.83729 -15.36413 -15.01349 -14.86502 -14.63744 -14.48215 -14.40475 -14.27003 -13.75973 -13.67218 -13.52477 -13.34084 -13.23857 -13.16473 -13.12167 -12.95248 -12.81970 -12.30504 -12.26783 -12.26294 -12.13898 -11.95241 -11.89561 -11.76463 -11.68788 -11.59916 -11.17425 -10.66860 -10.66821 -9.92269 -9.78008 -8.69132 -8.28152 -6.42422 -0.77036 0.54323 0.54683 1.39102 1.41091 1.52332 1.72782 2.36302 2.71510 2.81735 2.96667 3.05078 3.10500 3.35175 3.36794 3.66578 3.98112 3.99560 4.07029 4.13516 4.15513 4.19326 4.33234 4.34334 4.37477 4.55012 4.60225 4.63053 4.67048 4.71012 4.73352 4.74910 4.83368 4.95589 4.98822 5.03781 5.10250 5.15781 5.23101 5.23709 5.26094 5.33943 5.45245 5.58497 5.65877 5.73242 5.91551 6.03947 6.04442 6.40026 6.70825 7.27749 8.84138 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.002613 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.537057 B =10712.437468 C =12203.995852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.587 4.587 11 S 2.635 3.365 12 O -0.991 6.991 13 O -0.992 6.992 14 N -1.010 6.010 15 C 0.118 3.882 16 C -0.102 4.102 17 H 0.131 0.869 18 C 0.041 3.959 19 N -0.488 5.488 20 C 0.102 3.898 21 C -0.176 4.176 22 C -0.098 4.098 23 C -0.163 4.163 24 C -0.100 4.100 25 C -0.173 4.173 26 C 0.051 3.949 27 C -0.096 4.096 28 H 0.126 0.874 29 C 0.114 3.886 30 H 0.268 0.732 31 H 0.007 0.993 32 H 0.006 0.994 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.544 -24.128 0.299 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.719 4.719 11 S 2.734 3.266 12 O -0.981 6.981 13 O -0.982 6.982 14 N -0.849 5.849 15 C -0.007 4.007 16 C -0.122 4.122 17 H 0.149 0.851 18 C -0.084 4.084 19 N -0.201 5.201 20 C 0.002 3.998 21 C -0.196 4.196 22 C -0.116 4.116 23 C -0.182 4.182 24 C -0.119 4.119 25 C -0.194 4.194 26 C -0.075 4.075 27 C -0.117 4.117 28 H 0.144 0.856 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.154 0.846 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.144 0.856 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.325 -23.646 0.600 29.921 hybrid contribution 0.332 1.129 -0.331 1.223 sum 18.657 -22.516 0.269 29.243 Atomic orbital electron populations 1.70097 1.08047 1.28379 1.50786 1.26125 0.95885 1.03888 0.94319 0.85305 0.78605 0.77607 0.78704 1.19464 1.20699 1.18281 1.21495 0.93892 0.90819 1.51653 0.90822 1.18812 0.93556 0.93050 0.96312 1.30387 1.12783 1.16865 1.11901 1.04065 0.74134 0.75767 0.72629 1.93488 1.72433 1.85642 1.46533 1.93484 1.72328 1.85663 1.46748 1.58403 1.57790 1.54594 1.14158 1.21844 0.96079 0.96327 0.86405 1.23380 0.93262 0.98225 0.97375 0.85067 1.23242 0.95754 1.01426 0.87990 1.60496 1.01216 1.38415 1.19945 1.19335 0.91472 0.93020 0.95923 1.21228 0.98784 0.97632 1.01992 1.21299 0.92837 0.99432 0.98077 1.21349 1.00639 0.98802 0.97387 1.21265 0.95900 0.95887 0.98802 1.21067 0.94600 1.02966 1.00774 1.23137 0.88810 0.95315 1.00237 1.23387 0.97135 0.96926 0.94248 0.85620 1.22170 0.97716 0.94336 0.86838 0.92327 0.97460 0.97590 0.84570 0.84279 0.90390 0.90851 0.90186 0.90017 0.84577 0.84227 0.84612 0.84616 0.85592 0.89999 0.88606 0.90561 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.15 4.98 29.85 0.15 1.30 16 10 C -0.59 -22.97 6.12 71.98 0.44 -22.53 16 11 S 2.64 96.90 5.65 -56.49 -0.32 96.58 16 12 O -0.99 -41.88 17.60 -127.65 -2.25 -44.12 16 13 O -0.99 -42.34 17.27 -127.65 -2.20 -44.54 16 14 N -1.01 -26.24 3.62 -508.39 -1.84 -28.08 16 15 C 0.12 2.36 6.16 86.69 0.53 2.89 16 16 C -0.10 -1.40 4.21 -8.83 -0.04 -1.44 16 17 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 18 C 0.04 0.62 5.13 86.59 0.44 1.07 16 19 N -0.49 -8.05 4.80 -686.94 -3.30 -11.35 16 20 C 0.10 1.71 5.77 38.22 0.22 1.93 16 21 C -0.18 -2.56 8.66 22.40 0.19 -2.37 16 22 C -0.10 -1.27 10.04 22.25 0.22 -1.04 16 23 C -0.16 -2.12 10.04 22.29 0.22 -1.89 16 24 C -0.10 -1.42 10.04 22.25 0.22 -1.20 16 25 C -0.17 -2.85 8.59 22.40 0.19 -2.65 16 26 C 0.05 0.65 4.68 86.64 0.41 1.06 16 27 C -0.10 -1.39 4.38 -8.64 -0.04 -1.42 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 C 0.11 2.44 6.13 86.69 0.53 2.98 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 34 H 0.14 4.78 8.14 -2.39 -0.02 4.76 16 35 H 0.08 1.41 7.58 -2.38 -0.02 1.40 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.40 7.36 -2.39 -0.02 1.38 16 38 H 0.08 1.08 6.00 -2.39 -0.01 1.06 16 39 H 0.14 1.57 6.44 -2.91 -0.02 1.56 16 40 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.13 1.94 6.80 -2.91 -0.02 1.92 16 44 H 0.08 0.83 6.53 -2.39 -0.02 0.81 16 45 H 0.10 1.17 8.12 -2.38 -0.02 1.15 16 46 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 47 H 0.08 1.67 7.31 -2.38 -0.02 1.66 16 Total: -1.00 -77.62 383.57 -2.23 -79.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.96 Total: 16.24 kcal Atomic # 6 Polarization: -57.71 SS G_CDS: 4.40 Total: -53.31 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.85 Total: -96.54 kcal Atomic # 8 Polarization: -84.21 SS G_CDS: -4.45 Total: -88.66 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 96.90 SS G_CDS: -0.32 Total: 96.58 kcal Total: -77.62 -2.23 -79.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585114989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.498 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds