Wall clock time and date at job start Tue Mar 31 2020 06:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81395 * 109.46995 * 2 1 4 4 C 1.81400 * 102.99702 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.32643 * 304.65123 * 4 3 2 6 6 C 1.47097 * 109.32852 * 185.00211 * 4 3 2 7 7 C 1.52572 * 114.32793 * 176.93201 * 6 4 3 8 8 C 1.50884 * 109.35421 * 85.01360 * 7 6 4 9 9 C 1.53941 * 110.09837 * 268.11512 * 8 7 6 10 10 N 1.47608 * 112.14383 * 40.56201 * 9 8 7 11 11 C 1.34779 * 118.64526 * 222.13708 * 10 9 8 12 12 O 1.21600 * 119.99998 * 184.21565 * 11 10 9 13 13 C 1.47433 * 119.99720 * 4.20493 * 11 10 9 14 14 C 1.41283 * 126.41834 * 311.39422 * 13 11 10 15 15 N 1.30452 * 108.02140 * 179.97438 * 14 13 11 16 16 N 1.39933 * 108.89554 * 0.02562 * 15 14 13 17 17 C 1.46504 * 125.74704 * 179.73182 * 16 15 14 18 18 C 1.50693 * 109.47368 * 90.02550 * 17 16 15 19 19 H 1.08002 * 119.99853 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00343 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00217 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47033 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46845 * 120.00550 * 22 20 18 25 25 H 1.48504 * 109.47364 * 240.00598 * 22 20 18 26 26 C 1.34254 * 108.49372 * 359.97438 * 16 15 14 27 27 C 1.50696 * 126.28987 * 179.97438 * 26 16 15 28 28 C 1.44579 * 122.71114 * 42.40963 * 10 9 8 29 29 H 1.09000 * 109.46997 * 300.00179 * 1 2 3 30 30 H 1.09004 * 109.47274 * 60.00060 * 1 2 3 31 31 H 1.09006 * 109.47622 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46997 * 239.99821 * 2 1 3 33 33 H 1.08993 * 109.46953 * 120.00304 * 2 1 3 34 34 H 1.08993 * 108.51068 * 55.67652 * 6 4 3 35 35 H 1.08997 * 108.38434 * 298.09361 * 6 4 3 36 36 H 1.09001 * 109.48584 * 325.05329 * 7 6 4 37 37 H 1.09001 * 109.48622 * 204.98076 * 7 6 4 38 38 H 1.08997 * 109.36327 * 147.92062 * 8 7 6 39 39 H 1.09003 * 109.26305 * 28.24393 * 8 7 6 40 40 H 1.09001 * 108.94537 * 279.88364 * 9 8 7 41 41 H 1.08994 * 108.87870 * 161.20220 * 9 8 7 42 42 H 1.07998 * 125.98963 * 359.97438 * 14 13 11 43 43 H 1.09008 * 109.46582 * 210.02420 * 17 16 15 44 44 H 1.08996 * 109.47610 * 330.01927 * 17 16 15 45 45 H 0.96998 * 120.00000 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.47441 * 90.02125 * 27 26 16 47 47 H 1.09006 * 109.47325 * 210.02464 * 27 26 16 48 48 H 1.09004 * 109.47362 * 330.01662 * 27 26 16 49 49 H 1.08997 * 109.44810 * 29.04095 * 28 10 9 50 50 H 1.09006 * 109.44821 * 148.95971 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2299 0.8838 0.8451 6 6 4.5768 2.8248 0.1202 7 6 6.0994 2.7795 0.2053 8 6 6.6769 2.7311 -1.1878 9 6 6.8785 1.2694 -1.6265 10 7 5.7565 0.4044 -1.2122 11 6 6.0321 -0.8184 -0.7167 12 8 5.1260 -1.5805 -0.4396 13 6 7.4322 -1.2319 -0.5109 14 6 8.4866 -1.1170 -1.4443 15 7 9.5689 -1.5905 -0.8909 16 7 9.2631 -2.0250 0.4037 17 6 10.2065 -2.6255 1.3501 18 6 10.8422 -1.5416 2.1819 19 1 10.5710 -0.5086 2.0213 20 6 11.7700 -1.8685 3.1479 21 7 12.1006 -3.1264 3.3431 22 14 12.5586 -0.5248 4.1784 23 1 12.0204 0.7961 3.7652 24 1 12.2521 -0.7570 5.6128 25 1 14.0297 -0.5454 3.9769 26 6 7.9584 -1.8036 0.6301 27 6 7.2065 -2.1217 1.8967 28 6 4.3738 0.8124 -1.3214 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.1945 3.3139 1.0160 35 1 4.2963 3.4236 -0.7463 36 1 6.4065 1.8911 0.7573 37 1 6.4616 3.6703 0.7185 38 1 7.6367 3.2477 -1.1993 39 1 5.9926 3.2246 -1.8781 40 1 7.7996 0.8907 -1.1833 41 1 6.9688 1.2362 -2.7122 42 1 8.4100 -0.7089 -2.4412 43 1 9.6751 -3.3192 2.0019 44 1 10.9797 -3.1628 0.8010 45 1 12.7536 -3.3564 4.0224 46 1 7.2469 -1.2642 2.5684 47 1 6.1673 -2.3458 1.6558 48 1 7.6612 -2.9853 2.3821 49 1 4.2658 1.5103 -2.1516 50 1 3.7500 -0.0634 -1.5005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863948340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:40 Heat of formation + Delta-G solvation = 21.365818 kcal Electronic energy + Delta-G solvation = -29962.680767 eV Core-core repulsion = 26117.057298 eV Total energy + Delta-G solvation = -3845.623469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.172 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03605 -39.71674 -37.36638 -34.22085 -33.72962 -33.09248 -32.68690 -32.13144 -31.16317 -28.03293 -26.99844 -26.46762 -25.46019 -23.88536 -23.38729 -22.55561 -20.89400 -20.57065 -19.65404 -18.30138 -17.17120 -16.84166 -16.76253 -16.18790 -15.61134 -15.52928 -14.87537 -14.80868 -14.66265 -14.48678 -14.31215 -14.16476 -13.84979 -13.39783 -13.31170 -13.18354 -12.63216 -12.53649 -12.49803 -12.43854 -12.27248 -12.02682 -11.83120 -11.74433 -11.55588 -11.38960 -11.25133 -11.13108 -10.96739 -10.95594 -10.72608 -10.61790 -10.41347 -10.29347 -10.13036 -9.92238 -9.47533 -8.75154 -8.69921 -8.59420 -7.90434 -7.82073 -6.37044 -4.45087 1.47500 2.25642 2.34861 2.77051 3.07049 3.13450 3.21761 3.25121 3.37713 3.55431 4.20542 4.39632 4.53729 4.72134 4.75977 4.77162 4.80803 4.90824 4.98317 5.04309 5.14688 5.18523 5.25994 5.29252 5.38546 5.48678 5.54771 5.57995 5.58907 5.59517 5.62784 5.77112 5.85045 5.88903 5.90317 5.92449 5.93452 5.97155 6.01978 6.19656 6.28908 6.44270 6.65359 6.77472 6.88512 7.13086 7.46074 7.52571 7.73868 7.75911 8.35046 8.44707 8.60580 9.21960 10.71189 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.002812 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.460488 B = 9953.395471 C =10133.316824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 S -0.264 6.264 4 C -0.062 4.062 5 H 0.090 0.910 6 C -0.102 4.102 7 C -0.109 4.109 8 C -0.132 4.132 9 C 0.101 3.899 10 N -0.603 5.603 11 C 0.604 3.396 12 O -0.549 6.549 13 C -0.327 4.327 14 C 0.055 3.945 15 N -0.294 5.294 16 N -0.312 5.312 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.889 5.889 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.152 3.848 27 C -0.095 4.095 28 C 0.129 3.871 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.176 0.824 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 10.113 -7.970 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.235 4.235 3 S -0.036 6.036 4 C -0.192 4.192 5 H 0.108 0.892 6 C -0.141 4.141 7 C -0.149 4.149 8 C -0.170 4.170 9 C -0.021 4.021 10 N -0.336 5.336 11 C 0.394 3.606 12 O -0.427 6.427 13 C -0.343 4.343 14 C -0.131 4.131 15 N -0.114 5.114 16 N -0.089 5.089 17 C 0.134 3.866 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.205 1.205 26 C 0.015 3.985 27 C -0.153 4.153 28 C 0.004 3.996 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.193 0.807 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.711 10.210 -7.784 21.074 hybrid contribution 0.528 -0.242 0.663 0.881 sum -16.183 9.969 -7.122 20.297 Atomic orbital electron populations 1.21518 0.92479 1.02510 1.02872 1.23316 0.99634 0.94887 1.05674 1.86694 1.05406 1.13525 1.97937 1.22931 0.92530 1.01292 1.02400 0.89177 1.20256 0.95704 0.94953 1.03140 1.21021 0.93661 1.02889 0.97313 1.21786 1.02041 0.96018 0.97128 1.22231 0.90241 0.90272 0.99384 1.47582 1.05958 1.15617 1.64480 1.17592 0.87710 0.80297 0.74991 1.90691 1.47894 1.52474 1.51662 1.19573 0.94824 1.22076 0.97796 1.23708 0.89549 1.00429 0.99420 1.77152 1.22948 1.18704 0.92625 1.49301 1.06726 1.42250 1.10602 1.19846 0.87229 0.94161 0.85378 1.21265 1.24631 0.93355 1.18440 0.91630 1.24927 0.95897 0.96057 0.96808 1.69921 1.32646 1.16625 1.33456 0.86284 0.79172 0.81483 0.79673 1.19530 1.20571 1.20544 1.21273 0.85800 0.95184 0.96216 1.20516 0.99638 1.03017 0.92173 1.21768 0.82792 0.99701 0.95380 0.91876 0.91854 0.91113 0.89725 0.89873 0.91457 0.91403 0.91071 0.91267 0.90361 0.91613 0.88238 0.91905 0.80716 0.92673 0.92524 0.92142 0.90153 0.89608 0.90293 0.89986 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.92 37.16 0.37 -0.70 16 2 C -0.09 -0.86 6.34 37.16 0.24 -0.62 16 3 S -0.26 -2.82 21.09 -107.50 -2.27 -5.09 16 4 C -0.06 -0.68 2.54 -28.28 -0.07 -0.75 16 5 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 6 C -0.10 -0.99 4.38 -29.78 -0.13 -1.12 16 7 C -0.11 -1.09 5.51 -28.01 -0.15 -1.24 16 8 C -0.13 -1.17 5.71 -27.30 -0.16 -1.32 16 9 C 0.10 1.07 5.17 -2.94 -0.02 1.06 16 10 N -0.60 -7.55 2.23 -173.45 -0.39 -7.94 16 11 C 0.60 9.72 7.27 -12.51 -0.09 9.63 16 12 O -0.55 -10.09 15.49 5.28 0.08 -10.01 16 13 C -0.33 -5.77 4.99 -105.07 -0.52 -6.30 16 14 C 0.05 0.94 9.61 -16.98 -0.16 0.78 16 15 N -0.29 -6.16 12.50 30.86 0.39 -5.77 16 16 N -0.31 -6.85 3.56 -57.78 -0.21 -7.05 16 17 C 0.25 6.13 5.97 -5.19 -0.03 6.10 16 18 C -0.54 -14.11 9.39 -34.44 -0.32 -14.43 16 19 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 22 Si 0.91 20.34 29.54 -169.99 -5.02 15.32 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.15 2.97 7.01 -81.61 -0.57 2.40 16 27 C -0.10 -1.64 9.93 36.00 0.36 -1.28 16 28 C 0.13 1.45 4.74 -3.79 -0.02 1.43 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.86 6.86 -51.92 -0.36 0.51 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 35 H 0.07 0.61 7.35 -51.93 -0.38 0.23 16 36 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 40 H 0.10 1.26 4.84 -51.93 -0.25 1.00 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.18 2.29 7.55 -52.49 -0.40 1.90 16 43 H 0.06 1.35 7.01 -51.92 -0.36 0.98 16 44 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 48 H 0.08 1.35 7.05 -51.93 -0.37 0.99 16 49 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 50 H 0.08 1.06 5.62 -51.93 -0.29 0.77 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -29.34 404.79 -10.12 -39.46 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -8.15 Total: 3.22 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.39 Total: -4.71 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.53 Total: -44.28 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.27 Total: -5.09 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.34 -10.12 -39.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863948340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.823 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds