Wall clock time and date at job start Tue Mar 31 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47052 * 234.51954 * 3 2 1 5 5 C 1.37092 * 119.99843 * 264.15766 * 4 3 2 6 6 H 1.07999 * 119.99791 * 196.51256 * 5 4 3 7 7 C 1.38950 * 120.00313 * 16.51363 * 5 4 3 8 8 N 1.31408 * 119.99903 * 21.37459 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 201.37138 * 7 5 4 10 10 H 1.48496 * 109.46859 * 85.42457 * 9 7 5 11 11 H 1.48497 * 109.47097 * 205.42586 * 9 7 5 12 12 H 1.48503 * 109.46836 * 325.42850 * 9 7 5 13 13 C 1.34778 * 119.99683 * 84.15858 * 4 3 2 14 14 O 1.21292 * 119.99451 * 179.97438 * 13 4 3 15 15 C 1.50690 * 120.00345 * 359.97438 * 13 4 3 16 16 H 1.09003 * 109.47314 * 325.00491 * 15 13 4 17 17 S 1.81402 * 109.47464 * 204.99965 * 15 13 4 18 18 C 1.76198 * 103.00215 * 174.99804 * 17 15 13 19 19 C 1.38976 * 120.08173 * 359.73123 * 18 17 15 20 20 C 1.38074 * 119.92062 * 179.76212 * 19 18 17 21 21 C 1.38307 * 120.07918 * 0.48424 * 20 19 18 22 22 C 1.38301 * 120.16174 * 359.76522 * 21 20 19 23 23 C 1.38086 * 120.07765 * 0.02562 * 22 21 20 24 24 C 1.50700 * 109.47030 * 85.00178 * 15 13 4 25 25 C 1.38230 * 119.99991 * 59.72927 * 24 15 13 26 26 C 1.38236 * 119.99702 * 179.79191 * 25 24 15 27 27 C 1.38234 * 120.00314 * 0.43493 * 26 25 24 28 28 C 1.38237 * 119.99698 * 359.81524 * 27 26 25 29 29 C 1.38228 * 120.00288 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47105 * 114.51927 * 3 2 1 31 31 H 1.08998 * 109.47056 * 354.51752 * 3 2 1 32 32 H 0.96999 * 120.00378 * 179.97438 * 8 7 5 33 33 H 1.08007 * 120.03648 * 359.97438 * 19 18 17 34 34 H 1.08003 * 119.96176 * 180.23456 * 20 19 18 35 35 H 1.08007 * 119.91658 * 179.74400 * 21 20 19 36 36 H 1.07999 * 119.96156 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.03735 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.00080 * 359.97438 * 25 24 15 39 39 H 1.08008 * 119.99713 * 180.27401 * 26 25 24 40 40 H 1.07999 * 120.00169 * 179.83940 * 27 26 25 41 41 H 1.08002 * 119.99313 * 180.02562 * 28 27 26 42 42 H 1.07994 * 120.00570 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.8026 1.1247 5 6 3.4378 2.1162 0.9326 6 1 4.0376 2.6312 1.6684 7 6 3.0126 2.7851 -0.2087 8 7 1.9744 2.3419 -0.8815 9 14 3.9165 4.3143 -0.7865 10 1 5.0703 3.9170 -1.6327 11 1 2.9925 5.1662 -1.5774 12 1 4.4053 5.0750 0.3915 13 6 3.2088 0.2488 2.3483 14 8 3.6133 0.9126 3.2794 15 6 2.8325 -1.1950 2.5596 16 1 1.9863 -1.4472 1.9205 17 16 2.3770 -1.4534 4.2963 18 6 1.8339 -3.1294 4.3186 19 6 1.8383 -3.8787 3.1481 20 6 1.4166 -5.1933 3.1704 21 6 0.9808 -5.7616 4.3536 22 6 0.9701 -5.0175 5.5193 23 6 1.3945 -3.7035 5.5055 24 6 4.0048 -2.0757 2.2114 25 6 5.2008 -1.9347 2.8901 26 6 6.2747 -2.7456 2.5736 27 6 6.1555 -3.6912 1.5724 28 6 4.9611 -3.8287 0.8902 29 6 3.8858 -3.0209 1.2096 30 1 2.9711 0.4273 -0.9350 31 1 2.9718 -1.0221 0.0982 32 1 1.6773 2.8090 -1.6780 33 1 2.1743 -3.4342 2.2229 34 1 1.4233 -5.7773 2.2619 35 1 0.6476 -6.7889 4.3671 36 1 0.6288 -5.4643 6.4413 37 1 1.3855 -3.1229 6.4161 38 1 5.2952 -1.1932 3.6695 39 1 7.2078 -2.6384 3.1069 40 1 6.9954 -4.3229 1.3234 41 1 4.8678 -4.5678 0.1083 42 1 2.9525 -3.1285 0.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000030430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:37 Heat of formation + Delta-G solvation = 72.452503 kcal Electronic energy + Delta-G solvation = -28452.876090 eV Core-core repulsion = 24683.225069 eV Total energy + Delta-G solvation = -3769.651021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.91722 -38.84732 -38.34578 -35.95569 -34.49834 -33.24936 -31.80602 -31.05599 -30.86764 -30.51832 -27.89369 -27.44785 -24.74875 -22.91711 -22.69422 -22.23021 -21.69132 -19.60717 -18.12934 -17.73528 -17.15826 -16.71331 -16.17697 -15.98864 -15.40193 -15.11638 -14.96800 -14.64704 -14.38435 -14.03279 -13.84957 -13.58040 -13.38192 -13.15664 -13.07631 -13.02316 -12.77036 -12.59793 -12.40850 -12.04668 -11.75311 -11.47374 -11.42479 -11.23336 -11.17955 -11.07941 -10.87760 -10.67671 -10.47414 -10.44320 -9.97915 -9.67984 -9.38612 -9.03940 -8.95209 -8.76838 -8.41649 -8.19793 -7.15025 -6.62972 -4.11944 1.20270 1.28949 1.40681 1.51839 1.73943 2.64400 3.02461 3.16537 3.20231 3.39447 3.58093 3.77115 3.82429 3.89684 4.02969 4.55442 4.65643 4.81854 4.85763 4.91539 4.96552 5.06083 5.07210 5.12308 5.17537 5.28186 5.41518 5.43239 5.54739 5.57944 5.71892 5.78899 5.90161 6.00474 6.01751 6.15639 6.35470 6.38743 6.40353 6.49724 6.52360 6.61449 6.66704 6.94804 7.06678 7.35862 7.68858 8.11996 8.59271 8.82714 9.02692 9.52564 10.42825 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.003972 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.309192 B = 7047.004489 C = 7647.060658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.238 3.762 3 C 0.215 3.785 4 N -0.425 5.425 5 C -0.314 4.314 6 H 0.113 0.887 7 C 0.035 3.965 8 N -0.873 5.873 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.476 3.524 14 O -0.552 6.552 15 C -0.065 4.065 16 H 0.105 0.895 17 S -0.029 6.029 18 C -0.092 4.092 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.134 4.134 22 C -0.105 4.105 23 C -0.105 4.105 24 C -0.076 4.076 25 C -0.083 4.083 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.118 4.118 29 C -0.116 4.116 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.276 0.724 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -15.939 3.292 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.080 4.080 3 C 0.088 3.912 4 N -0.145 5.145 5 C -0.441 4.441 6 H 0.131 0.869 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.262 3.738 14 O -0.434 6.434 15 C -0.197 4.197 16 H 0.123 0.877 17 S 0.220 5.780 18 C -0.205 4.205 19 C -0.164 4.164 20 C -0.120 4.120 21 C -0.155 4.155 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.078 4.078 25 C -0.102 4.102 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.136 4.136 29 C -0.135 4.135 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.519 -14.526 4.475 15.602 hybrid contribution 0.437 -0.143 -1.664 1.726 sum 3.956 -14.670 2.811 15.452 Atomic orbital electron populations 1.80923 1.13383 1.11084 1.08758 1.29285 0.95338 0.90805 0.92579 1.18900 0.81665 0.95371 0.95301 1.43470 1.55611 1.10805 1.04581 1.19790 1.31146 0.86039 1.07087 0.86933 1.25314 0.94950 0.99628 0.97109 1.69869 1.20507 1.41869 1.18912 0.85852 0.79037 0.80371 0.79057 1.19912 1.20951 1.19196 1.18823 0.85493 0.85841 0.83617 1.90590 1.50105 1.62550 1.40114 1.22659 0.99492 0.99118 0.98419 0.87714 1.85981 1.77514 1.05162 1.09334 1.22187 1.02390 0.99141 0.96771 1.21694 1.01584 0.95244 0.97908 1.21020 0.98226 0.94732 0.98037 1.21098 1.01611 0.99844 0.92994 1.21013 0.99462 0.93778 0.98217 1.20713 1.00358 0.95356 0.96469 1.19502 0.94478 0.96332 0.97494 1.21130 0.91712 0.98328 0.98996 1.21122 0.98555 0.95961 0.97893 1.21130 0.97548 0.98545 0.96377 1.20984 0.93046 0.99535 1.00010 1.20973 0.99084 0.96169 0.97304 0.84883 0.90062 0.91339 0.84850 0.86098 0.86271 0.85927 0.85726 0.84862 0.85951 0.86230 0.85941 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.83 18.54 42.15 0.78 -10.05 16 2 C 0.24 5.21 12.66 -20.76 -0.26 4.94 16 3 C 0.22 4.26 4.79 -6.83 -0.03 4.23 16 4 N -0.43 -9.76 2.60 -117.94 -0.31 -10.06 16 5 C -0.31 -7.87 9.34 -14.94 -0.14 -8.01 16 6 H 0.11 2.97 7.37 -52.49 -0.39 2.59 16 7 C 0.03 0.83 4.88 -17.47 -0.09 0.74 16 8 N -0.87 -21.40 9.44 55.50 0.52 -20.88 16 9 Si 0.93 19.13 29.60 -169.99 -5.03 14.10 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.48 10.67 6.30 -10.99 -0.07 10.60 16 14 O -0.55 -14.00 15.78 5.55 0.09 -13.91 16 15 C -0.06 -1.18 1.35 -29.04 -0.04 -1.22 16 16 H 0.10 1.88 5.25 -51.92 -0.27 1.60 16 17 S -0.03 -0.53 20.28 -107.50 -2.18 -2.71 16 18 C -0.09 -1.41 6.06 -39.04 -0.24 -1.65 16 19 C -0.14 -2.00 8.51 -39.37 -0.34 -2.34 16 20 C -0.10 -1.21 10.04 -39.62 -0.40 -1.61 16 21 C -0.13 -1.48 10.04 -39.53 -0.40 -1.88 16 22 C -0.10 -1.20 10.04 -39.61 -0.40 -1.60 16 23 C -0.10 -1.42 9.79 -39.37 -0.39 -1.80 16 24 C -0.08 -1.18 3.37 -104.62 -0.35 -1.53 16 25 C -0.08 -1.28 8.89 -39.59 -0.35 -1.63 16 26 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 28 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 29 C -0.12 -1.50 6.26 -39.58 -0.25 -1.75 16 30 H 0.13 2.68 6.36 -51.93 -0.33 2.35 16 31 H 0.08 1.31 4.85 -51.93 -0.25 1.06 16 32 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.13 1.86 2.41 -52.48 -0.13 1.73 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.13 2.26 8.05 -52.49 -0.42 1.84 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.41 6.73 -52.49 -0.35 1.06 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -30.17 365.76 -9.78 -39.95 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.24 Total: 7.86 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -4.92 Total: -9.81 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 1.00 Total: -40.99 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -2.18 Total: -2.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.17 -9.78 -39.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000030430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.399 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds