Wall clock time and date at job start Tue Mar 31 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47052 * 234.51954 * 3 2 1 5 5 C 1.37092 * 119.99843 * 264.15766 * 4 3 2 6 6 H 1.07999 * 119.99791 * 196.51256 * 5 4 3 7 7 C 1.38950 * 120.00313 * 16.51363 * 5 4 3 8 8 N 1.31408 * 119.99903 * 21.37459 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 201.37138 * 7 5 4 10 10 H 1.48496 * 109.46859 * 85.42457 * 9 7 5 11 11 H 1.48497 * 109.47097 * 205.42586 * 9 7 5 12 12 H 1.48503 * 109.46836 * 325.42850 * 9 7 5 13 13 C 1.34778 * 119.99683 * 84.15858 * 4 3 2 14 14 O 1.21292 * 119.99451 * 179.97438 * 13 4 3 15 15 C 1.50690 * 120.00345 * 359.97438 * 13 4 3 16 16 H 1.09003 * 109.47314 * 325.00491 * 15 13 4 17 17 S 1.81402 * 109.47464 * 204.99965 * 15 13 4 18 18 C 1.76198 * 103.00215 * 174.99804 * 17 15 13 19 19 C 1.38976 * 120.08173 * 359.73123 * 18 17 15 20 20 C 1.38074 * 119.92062 * 179.76212 * 19 18 17 21 21 C 1.38307 * 120.07918 * 0.48424 * 20 19 18 22 22 C 1.38301 * 120.16174 * 359.76522 * 21 20 19 23 23 C 1.38086 * 120.07765 * 0.02562 * 22 21 20 24 24 C 1.50700 * 109.47030 * 85.00178 * 15 13 4 25 25 C 1.38230 * 119.99991 * 59.72927 * 24 15 13 26 26 C 1.38236 * 119.99702 * 179.79191 * 25 24 15 27 27 C 1.38234 * 120.00314 * 0.43493 * 26 25 24 28 28 C 1.38237 * 119.99698 * 359.81524 * 27 26 25 29 29 C 1.38228 * 120.00288 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47105 * 114.51927 * 3 2 1 31 31 H 1.08998 * 109.47056 * 354.51752 * 3 2 1 32 32 H 0.96999 * 120.00378 * 179.97438 * 8 7 5 33 33 H 1.08007 * 120.03648 * 359.97438 * 19 18 17 34 34 H 1.08003 * 119.96176 * 180.23456 * 20 19 18 35 35 H 1.08007 * 119.91658 * 179.74400 * 21 20 19 36 36 H 1.07999 * 119.96156 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.03735 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.00080 * 359.97438 * 25 24 15 39 39 H 1.08008 * 119.99713 * 180.27401 * 26 25 24 40 40 H 1.07999 * 120.00169 * 179.83940 * 27 26 25 41 41 H 1.08002 * 119.99313 * 180.02562 * 28 27 26 42 42 H 1.07994 * 120.00570 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.8026 1.1247 5 6 3.4378 2.1162 0.9326 6 1 4.0376 2.6312 1.6684 7 6 3.0126 2.7851 -0.2087 8 7 1.9744 2.3419 -0.8815 9 14 3.9165 4.3143 -0.7865 10 1 5.0703 3.9170 -1.6327 11 1 2.9925 5.1662 -1.5774 12 1 4.4053 5.0750 0.3915 13 6 3.2088 0.2488 2.3483 14 8 3.6133 0.9126 3.2794 15 6 2.8325 -1.1950 2.5596 16 1 1.9863 -1.4472 1.9205 17 16 2.3770 -1.4534 4.2963 18 6 1.8339 -3.1294 4.3186 19 6 1.8383 -3.8787 3.1481 20 6 1.4166 -5.1933 3.1704 21 6 0.9808 -5.7616 4.3536 22 6 0.9701 -5.0175 5.5193 23 6 1.3945 -3.7035 5.5055 24 6 4.0048 -2.0757 2.2114 25 6 5.2008 -1.9347 2.8901 26 6 6.2747 -2.7456 2.5736 27 6 6.1555 -3.6912 1.5724 28 6 4.9611 -3.8287 0.8902 29 6 3.8858 -3.0209 1.2096 30 1 2.9711 0.4273 -0.9350 31 1 2.9718 -1.0221 0.0982 32 1 1.6773 2.8090 -1.6780 33 1 2.1743 -3.4342 2.2229 34 1 1.4233 -5.7773 2.2619 35 1 0.6476 -6.7889 4.3671 36 1 0.6288 -5.4643 6.4413 37 1 1.3855 -3.1229 6.4161 38 1 5.2952 -1.1932 3.6695 39 1 7.2078 -2.6384 3.1069 40 1 6.9954 -4.3229 1.3234 41 1 4.8678 -4.5678 0.1083 42 1 2.9525 -3.1285 0.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000030430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:36 Heat of formation + Delta-G solvation = 58.312602 kcal Electronic energy + Delta-G solvation = -28453.489242 eV Core-core repulsion = 24683.225069 eV Total energy + Delta-G solvation = -3770.264173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32750 -40.00311 -39.52200 -37.76499 -36.32580 -34.58500 -33.51598 -32.05575 -31.83294 -31.49994 -29.45679 -28.92942 -26.49579 -23.90486 -23.71407 -23.20860 -22.84669 -21.16913 -19.92717 -18.99656 -18.39324 -18.29252 -17.66168 -17.09717 -16.63744 -16.49447 -16.27312 -15.84565 -15.68913 -15.40522 -15.21839 -14.89687 -14.73131 -14.43225 -14.36413 -14.19586 -13.97843 -13.84539 -13.74948 -13.52115 -13.46428 -13.20816 -12.95476 -12.50238 -12.40931 -12.28121 -12.21584 -12.12633 -12.04400 -11.82379 -11.25711 -11.17697 -10.77407 -10.67739 -10.05507 -9.93024 -9.75878 -9.56310 -8.48997 -8.44358 -6.05414 0.03932 0.30204 0.44442 0.51603 0.56435 1.33394 1.42325 1.46309 1.56311 1.69859 1.87058 2.08469 2.28764 2.76364 2.81654 2.90407 3.03615 3.34163 3.52031 3.58955 3.78116 3.96473 4.06864 4.11529 4.17679 4.27358 4.31917 4.36317 4.55424 4.60082 4.62546 4.71551 4.74741 4.82764 5.00253 5.10381 5.17199 5.37894 5.41707 5.48237 5.54153 5.58919 5.61556 5.64709 5.86244 6.04013 6.10682 6.26190 6.83197 6.97329 7.18188 7.71903 8.55108 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.003972 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.309192 B = 7047.004489 C = 7647.060658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.250 3.750 3 C 0.220 3.780 4 N -0.437 5.437 5 C -0.344 4.344 6 H 0.087 0.913 7 C 0.010 3.990 8 N -0.889 5.889 9 Si 0.990 3.010 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.471 3.529 14 O -0.593 6.593 15 C -0.040 4.040 16 H 0.103 0.897 17 S -0.095 6.095 18 C -0.106 4.106 19 C -0.154 4.154 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.092 4.092 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.108 4.108 28 C -0.108 4.108 29 C -0.119 4.119 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.279 0.721 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.161 0.839 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 -19.696 1.551 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.068 4.068 3 C 0.093 3.907 4 N -0.156 5.156 5 C -0.471 4.471 6 H 0.104 0.896 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.814 3.186 10 H -0.181 1.181 11 H -0.207 1.207 12 H -0.203 1.203 13 C 0.259 3.741 14 O -0.477 6.477 15 C -0.172 4.172 16 H 0.121 0.879 17 S 0.153 5.847 18 C -0.219 4.219 19 C -0.178 4.178 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.144 4.144 24 C -0.094 4.094 25 C -0.127 4.127 26 C -0.139 4.139 27 C -0.127 4.127 28 C -0.125 4.125 29 C -0.139 4.139 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.136 -18.319 2.717 18.976 hybrid contribution 0.236 0.897 -1.036 1.390 sum 4.372 -17.422 1.682 18.041 Atomic orbital electron populations 1.80914 1.14325 1.12204 1.09789 1.29660 0.95705 0.89829 0.91610 1.19112 0.80400 0.96963 0.94192 1.43602 1.55758 1.10604 1.05625 1.19688 1.32345 0.87486 1.07588 0.89561 1.25940 0.95069 1.01843 0.96408 1.69936 1.20882 1.42840 1.19008 0.84980 0.78342 0.77084 0.78192 1.18107 1.20727 1.20289 1.19552 0.84049 0.87603 0.82936 1.90547 1.51539 1.64220 1.41443 1.22310 1.00546 0.96406 0.97959 0.87878 1.86039 1.78934 1.09261 1.10486 1.22086 1.04493 0.96984 0.98333 1.21838 1.02227 0.96338 0.97363 1.21399 0.97254 0.93821 0.99759 1.21576 0.99639 1.01286 0.92154 1.21397 0.98296 0.92608 0.99966 1.20936 1.00808 0.96651 0.95997 1.19354 0.93310 0.97486 0.99283 1.21027 0.93236 0.99181 0.99297 1.21363 0.98232 0.95748 0.98583 1.21566 0.98719 0.97593 0.94778 1.21427 0.91993 0.99061 1.00050 1.21184 1.00607 0.95656 0.96425 0.84900 0.86212 0.91101 0.84974 0.83212 0.82707 0.82884 0.85730 0.88115 0.84304 0.82660 0.82168 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.29 18.54 20.01 0.37 -22.91 16 2 C 0.25 11.00 12.66 89.44 1.13 12.13 16 3 C 0.22 8.75 4.79 84.58 0.41 9.16 16 4 N -0.44 -20.85 2.60 -645.43 -1.68 -22.53 16 5 C -0.34 -18.02 9.34 84.04 0.79 -17.24 16 6 H 0.09 4.88 7.37 -2.91 -0.02 4.86 16 7 C 0.01 0.51 4.88 84.93 0.41 0.92 16 8 N -0.89 -43.78 9.44 21.66 0.20 -43.58 16 9 Si 0.99 39.59 29.60 68.60 2.03 41.62 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 11 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.47 22.40 6.30 87.65 0.55 22.95 16 14 O -0.59 -32.62 15.78 -3.07 -0.05 -32.66 16 15 C -0.04 -1.54 1.35 29.10 0.04 -1.50 16 16 H 0.10 3.82 5.25 -2.39 -0.01 3.81 16 17 S -0.10 -3.67 20.28 -56.49 -1.15 -4.82 16 18 C -0.11 -3.33 6.06 22.62 0.14 -3.19 16 19 C -0.15 -4.21 8.51 22.41 0.19 -4.02 16 20 C -0.10 -2.13 10.04 22.25 0.22 -1.91 16 21 C -0.13 -2.29 10.04 22.30 0.22 -2.06 16 22 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 23 C -0.12 -3.22 9.79 22.41 0.22 -3.00 16 24 C -0.09 -2.89 3.37 -19.86 -0.07 -2.96 16 25 C -0.11 -3.47 8.89 22.27 0.20 -3.27 16 26 C -0.12 -2.94 10.05 22.27 0.22 -2.71 16 27 C -0.11 -2.02 10.05 22.27 0.22 -1.79 16 28 C -0.11 -1.96 10.05 22.27 0.22 -1.74 16 29 C -0.12 -2.83 6.26 22.27 0.14 -2.69 16 30 H 0.13 5.33 6.36 -2.39 -0.02 5.32 16 31 H 0.12 3.77 4.85 -2.39 -0.01 3.76 16 32 H 0.28 13.13 8.31 -92.71 -0.77 12.36 16 33 H 0.13 3.54 2.41 -2.91 -0.01 3.53 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.10 3.81 8.05 -2.91 -0.02 3.79 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 40 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 42 H 0.14 2.79 6.73 -2.91 -0.02 2.77 16 Total: -1.00 -70.39 365.76 6.30 -64.09 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.08 Total: 25.56 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.49 Total: -4.77 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -1.10 Total: -89.02 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.15 Total: -4.82 kcal Total: -70.39 6.30 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000030430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.406 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds