Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86809 * 119.99825 * 2 1 4 4 H 1.48497 * 109.46966 * 274.98495 * 3 2 1 5 5 H 1.48497 * 109.46917 * 34.98323 * 3 2 1 6 6 H 1.48499 * 109.46988 * 154.98503 * 3 2 1 7 7 C 1.39903 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00306 * 147.60838 * 7 2 1 9 9 C 1.41155 * 119.99868 * 327.61463 * 7 2 1 10 10 C 1.40867 * 120.16431 * 158.00899 * 9 7 2 11 11 C 1.36367 * 119.83017 * 180.02562 * 10 9 7 12 12 C 1.39489 * 120.16973 * 0.02562 * 11 10 9 13 13 N 1.39228 * 119.83492 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00012 * 142.47488 * 13 12 11 15 15 O 1.21287 * 120.00073 * 3.01032 * 14 13 12 16 16 C 1.50704 * 120.00422 * 183.00820 * 14 13 12 17 17 C 1.52993 * 109.47452 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46886 * 305.00077 * 17 16 14 19 19 C 1.53004 * 109.47406 * 64.99878 * 17 16 14 20 20 C 1.50694 * 109.47066 * 185.00300 * 19 17 16 21 21 O 1.20824 * 120.00327 * 359.97438 * 20 19 17 22 22 O 1.34238 * 119.99711 * 180.02562 * 20 19 17 23 23 C 1.50704 * 109.47276 * 184.99941 * 17 16 14 24 24 C 1.38231 * 119.99508 * 299.72673 * 23 17 16 25 25 C 1.38244 * 119.99448 * 179.78513 * 24 23 17 26 26 C 1.38237 * 120.00000 * 0.44362 * 25 24 23 27 27 C 1.38239 * 119.99936 * 359.81027 * 26 25 24 28 28 C 1.38232 * 119.99806 * 119.99843 * 23 17 16 29 29 C 1.39483 * 120.32807 * 0.24784 * 12 11 10 30 30 C 1.36375 * 120.17005 * 359.45069 * 29 12 11 31 31 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.08383 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.91872 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00132 * 322.20332 * 13 12 11 35 35 H 1.09006 * 109.46755 * 300.00533 * 16 14 13 36 36 H 1.08997 * 109.46800 * 59.99814 * 16 14 13 37 37 H 1.09007 * 109.46693 * 305.00191 * 19 17 16 38 38 H 1.09001 * 109.46782 * 64.99750 * 19 17 16 39 39 H 0.96698 * 116.99784 * 179.97438 * 22 20 19 40 40 H 1.07995 * 120.00698 * 359.97438 * 24 23 17 41 41 H 1.07999 * 119.99841 * 180.27442 * 25 24 23 42 42 H 1.07997 * 120.00124 * 179.83018 * 26 25 24 43 43 H 1.08002 * 120.00012 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00204 * 359.97438 * 28 23 17 45 45 H 1.08000 * 119.91134 * 179.72361 * 29 12 11 46 46 H 1.07995 * 120.08479 * 180.24644 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5005 9 6 1.4673 -2.3386 0.6558 10 6 1.8864 -3.6348 0.2972 11 6 1.3589 -4.7189 0.9343 12 6 0.4061 -4.5469 1.9385 13 7 -0.1283 -5.6587 2.5841 14 6 -0.3941 -5.6082 3.9044 15 8 -0.2191 -4.5774 4.5192 16 6 -0.9087 -6.8323 4.6169 17 6 -1.1275 -6.5075 6.0959 18 1 -0.2050 -6.1126 6.5214 19 6 -2.2385 -5.4641 6.2300 20 6 -2.3704 -5.0535 7.6739 21 8 -1.6500 -5.5452 8.5101 22 8 -3.2889 -4.1421 8.0313 23 6 -1.5242 -7.7611 6.8323 24 6 -2.6724 -8.4407 6.4711 25 6 -3.0338 -9.5932 7.1437 26 6 -2.2520 -10.0607 8.1834 27 6 -1.1065 -9.3780 8.5480 28 6 -0.7428 -8.2281 7.8726 29 6 -0.0180 -3.2669 2.2951 30 6 0.5050 -2.1728 1.6712 31 1 -0.4850 0.8400 0.0004 32 1 2.6231 -3.7696 -0.4810 33 1 1.6795 -5.7133 0.6608 34 1 -0.3131 -6.4683 2.0828 35 1 -1.8532 -7.1428 4.1698 36 1 -0.1811 -7.6387 4.5254 37 1 -1.9923 -4.5914 5.6251 38 1 -3.1808 -5.8905 5.8859 39 1 -3.3362 -3.9109 8.9691 40 1 -3.2854 -8.0732 5.6615 41 1 -3.9285 -10.1267 6.8586 42 1 -2.5358 -10.9595 8.7107 43 1 -0.4959 -9.7431 9.3606 44 1 0.1522 -7.6948 8.1573 45 1 -0.7594 -3.1417 3.0705 46 1 0.1785 -1.1822 1.9512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000152831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -91.104137 kcal Electronic energy + Delta-G solvation = -29982.891605 eV Core-core repulsion = 25801.509797 eV Total energy + Delta-G solvation = -4181.381808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.73071 -39.68032 -39.15241 -37.37900 -36.22627 -35.07277 -34.35567 -33.05518 -31.02433 -30.17110 -29.72267 -29.45458 -28.45877 -25.22937 -23.97312 -22.73732 -21.99206 -21.47538 -21.12267 -19.97681 -19.40120 -18.08304 -17.40184 -17.36129 -16.85854 -16.59884 -16.16677 -15.89363 -15.27584 -15.20960 -14.95335 -14.79762 -14.06602 -13.93909 -13.73982 -13.47259 -13.35246 -13.10035 -12.90131 -12.64040 -12.51710 -12.14680 -12.10882 -11.99007 -11.90772 -11.51264 -11.47017 -11.26434 -11.17845 -11.11835 -10.98660 -10.83731 -10.66851 -10.51981 -10.06262 -9.67039 -9.34900 -9.02022 -8.97805 -8.91013 -8.78164 -7.55487 -7.17945 -6.87240 -4.29403 1.22292 1.31674 2.25293 2.56231 2.94430 3.03061 3.05172 3.07992 3.12321 3.33066 3.61202 3.76227 3.88544 4.49150 4.56036 4.59151 4.76324 4.86266 4.91091 4.99020 5.12967 5.23282 5.29400 5.35981 5.40478 5.48809 5.64332 5.71488 5.78307 5.88925 5.92476 6.04203 6.13519 6.34216 6.37567 6.39941 6.48173 6.57720 6.77433 6.89429 6.95820 7.02347 7.07857 7.26753 7.54279 7.64958 7.89228 7.91873 8.01718 8.18057 8.27831 8.55946 8.74847 8.82388 8.98396 10.01271 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002184 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.336092 B =12818.527290 C =13859.259480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.112 3.888 10 C -0.223 4.223 11 C -0.094 4.094 12 C -0.023 4.023 13 N -0.648 5.648 14 C 0.496 3.504 15 O -0.532 6.532 16 C -0.132 4.132 17 C -0.019 4.019 18 H 0.099 0.901 19 C -0.115 4.115 20 C 0.482 3.518 21 O -0.511 6.511 22 O -0.520 6.520 23 C -0.072 4.072 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.086 4.086 29 C -0.073 4.073 30 C -0.174 4.174 31 H 0.284 0.716 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.394 0.606 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.406 0.594 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 -15.141 12.095 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.109 3.891 10 C -0.243 4.243 11 C -0.114 4.114 12 C -0.115 4.115 13 N -0.290 5.290 14 C 0.283 3.717 15 O -0.410 6.410 16 C -0.172 4.172 17 C -0.038 4.038 18 H 0.117 0.883 19 C -0.152 4.152 20 C 0.325 3.675 21 O -0.399 6.399 22 O -0.332 6.332 23 C -0.072 4.072 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.141 4.141 28 C -0.104 4.104 29 C -0.093 4.093 30 C -0.194 4.194 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.227 0.773 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.264 0.736 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.496 -14.518 12.331 20.470 hybrid contribution 0.138 0.483 0.344 0.609 sum -7.358 -14.035 12.675 20.292 Atomic orbital electron populations 1.69937 1.08105 1.29957 1.30898 1.25944 0.94366 1.01560 0.91581 0.86510 0.81547 0.80877 0.79158 1.19474 1.19837 1.18089 1.19499 1.05330 0.93849 1.30580 0.90043 1.17598 0.89942 0.91767 0.89767 1.20471 1.07026 0.92341 1.04457 1.20059 0.96389 0.97262 0.97728 1.17052 1.04819 0.85937 1.03657 1.42955 1.62466 1.15600 1.08023 1.20525 0.79036 0.89928 0.82253 1.90671 1.52284 1.32177 1.65855 1.21722 1.03352 0.97534 0.94633 1.19716 0.99313 0.91281 0.93471 0.88320 1.21646 1.00736 1.02447 0.90369 1.23476 0.76289 0.75281 0.92475 1.90699 1.42932 1.53070 1.53224 1.84561 1.56554 1.57398 1.34646 1.19759 0.95197 0.95819 0.96474 1.21011 0.96798 0.95799 1.00265 1.21070 0.99804 0.96722 0.96591 1.21112 0.95498 1.00004 0.97777 1.21141 0.97214 0.95816 0.99936 1.21044 0.99559 0.95262 0.94571 1.20364 0.98885 0.91385 0.98628 1.20715 1.02756 0.97009 0.98932 0.90530 0.88706 0.89283 0.77290 0.88791 0.88278 0.85099 0.88182 0.73589 0.86173 0.86322 0.86493 0.86335 0.86002 0.88068 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.47 11.77 55.55 0.65 -18.81 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.08 16 3 Si 0.90 18.27 29.66 -169.99 -5.04 13.23 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.47 -12.17 8.94 -37.85 -0.34 -12.51 16 8 H 0.08 2.05 8.02 -52.49 -0.42 1.63 16 9 C 0.11 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.22 -5.35 9.74 -39.26 -0.38 -5.73 16 11 C -0.09 -2.03 9.90 -39.79 -0.39 -2.42 16 12 C -0.02 -0.49 6.25 -83.57 -0.52 -1.01 16 13 N -0.65 -10.58 5.30 -9.74 -0.05 -10.63 16 14 C 0.50 7.73 7.31 -10.98 -0.08 7.65 16 15 O -0.53 -10.40 11.62 5.55 0.06 -10.34 16 16 C -0.13 -1.40 4.92 -27.88 -0.14 -1.54 16 17 C -0.02 -0.22 1.34 -91.77 -0.12 -0.34 16 18 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 19 C -0.11 -1.35 4.97 -27.88 -0.14 -1.49 16 20 C 0.48 6.11 8.08 36.00 0.29 6.40 16 21 O -0.51 -7.50 14.95 -18.75 -0.28 -7.78 16 22 O -0.52 -5.53 13.42 -39.28 -0.53 -6.06 16 23 C -0.07 -0.79 3.74 -104.62 -0.39 -1.18 16 24 C -0.12 -1.14 8.71 -39.58 -0.34 -1.49 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 28 C -0.09 -0.97 8.64 -39.58 -0.34 -1.32 16 29 C -0.07 -1.75 8.59 -39.79 -0.34 -2.09 16 30 C -0.17 -4.57 8.74 -39.26 -0.34 -4.92 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 33 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.39 4.93 8.82 -40.82 -0.36 4.57 16 35 H 0.09 0.76 7.59 -51.93 -0.39 0.37 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.13 1.82 5.88 -51.93 -0.31 1.51 16 38 H 0.10 0.94 7.21 -51.93 -0.37 0.56 16 39 H 0.41 2.58 9.10 45.56 0.41 2.99 16 40 H 0.12 0.92 7.13 -52.49 -0.37 0.54 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.39 7.95 -52.49 -0.42 0.97 16 45 H 0.10 2.40 6.46 -52.49 -0.34 2.06 16 46 H 0.11 2.86 6.52 -52.49 -0.34 2.52 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -32.30 387.29 -9.78 -42.08 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -4.97 Total: 14.67 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -5.46 Total: -22.19 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.60 Total: -29.44 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.74 Total: -24.18 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.30 -9.78 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000152831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.027 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds