Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86809 * 119.99825 * 2 1 4 4 H 1.48497 * 109.46966 * 274.98495 * 3 2 1 5 5 H 1.48497 * 109.46917 * 34.98323 * 3 2 1 6 6 H 1.48499 * 109.46988 * 154.98503 * 3 2 1 7 7 C 1.39903 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00306 * 147.60838 * 7 2 1 9 9 C 1.41155 * 119.99868 * 327.61463 * 7 2 1 10 10 C 1.40867 * 120.16431 * 158.00899 * 9 7 2 11 11 C 1.36367 * 119.83017 * 180.02562 * 10 9 7 12 12 C 1.39489 * 120.16973 * 0.02562 * 11 10 9 13 13 N 1.39228 * 119.83492 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00012 * 142.47488 * 13 12 11 15 15 O 1.21287 * 120.00073 * 3.01032 * 14 13 12 16 16 C 1.50704 * 120.00422 * 183.00820 * 14 13 12 17 17 C 1.52993 * 109.47452 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.46886 * 305.00077 * 17 16 14 19 19 C 1.53004 * 109.47406 * 64.99878 * 17 16 14 20 20 C 1.50694 * 109.47066 * 185.00300 * 19 17 16 21 21 O 1.20824 * 120.00327 * 359.97438 * 20 19 17 22 22 O 1.34238 * 119.99711 * 180.02562 * 20 19 17 23 23 C 1.50704 * 109.47276 * 184.99941 * 17 16 14 24 24 C 1.38231 * 119.99508 * 299.72673 * 23 17 16 25 25 C 1.38244 * 119.99448 * 179.78513 * 24 23 17 26 26 C 1.38237 * 120.00000 * 0.44362 * 25 24 23 27 27 C 1.38239 * 119.99936 * 359.81027 * 26 25 24 28 28 C 1.38232 * 119.99806 * 119.99843 * 23 17 16 29 29 C 1.39483 * 120.32807 * 0.24784 * 12 11 10 30 30 C 1.36375 * 120.17005 * 359.45069 * 29 12 11 31 31 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.08383 * 359.97438 * 10 9 7 33 33 H 1.07998 * 119.91872 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00132 * 322.20332 * 13 12 11 35 35 H 1.09006 * 109.46755 * 300.00533 * 16 14 13 36 36 H 1.08997 * 109.46800 * 59.99814 * 16 14 13 37 37 H 1.09007 * 109.46693 * 305.00191 * 19 17 16 38 38 H 1.09001 * 109.46782 * 64.99750 * 19 17 16 39 39 H 0.96698 * 116.99784 * 179.97438 * 22 20 19 40 40 H 1.07995 * 120.00698 * 359.97438 * 24 23 17 41 41 H 1.07999 * 119.99841 * 180.27442 * 25 24 23 42 42 H 1.07997 * 120.00124 * 179.83018 * 26 25 24 43 43 H 1.08002 * 120.00012 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00204 * 359.97438 * 28 23 17 45 45 H 1.08000 * 119.91134 * 179.72361 * 29 12 11 46 46 H 1.07995 * 120.08479 * 180.24644 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5005 9 6 1.4673 -2.3386 0.6558 10 6 1.8864 -3.6348 0.2972 11 6 1.3589 -4.7189 0.9343 12 6 0.4061 -4.5469 1.9385 13 7 -0.1283 -5.6587 2.5841 14 6 -0.3941 -5.6082 3.9044 15 8 -0.2191 -4.5774 4.5192 16 6 -0.9087 -6.8323 4.6169 17 6 -1.1275 -6.5075 6.0959 18 1 -0.2050 -6.1126 6.5214 19 6 -2.2385 -5.4641 6.2300 20 6 -2.3704 -5.0535 7.6739 21 8 -1.6500 -5.5452 8.5101 22 8 -3.2889 -4.1421 8.0313 23 6 -1.5242 -7.7611 6.8323 24 6 -2.6724 -8.4407 6.4711 25 6 -3.0338 -9.5932 7.1437 26 6 -2.2520 -10.0607 8.1834 27 6 -1.1065 -9.3780 8.5480 28 6 -0.7428 -8.2281 7.8726 29 6 -0.0180 -3.2669 2.2951 30 6 0.5050 -2.1728 1.6712 31 1 -0.4850 0.8400 0.0004 32 1 2.6231 -3.7696 -0.4810 33 1 1.6795 -5.7133 0.6608 34 1 -0.3131 -6.4683 2.0828 35 1 -1.8532 -7.1428 4.1698 36 1 -0.1811 -7.6387 4.5254 37 1 -1.9923 -4.5914 5.6251 38 1 -3.1808 -5.8905 5.8859 39 1 -3.3362 -3.9109 8.9691 40 1 -3.2854 -8.0732 5.6615 41 1 -3.9285 -10.1267 6.8586 42 1 -2.5358 -10.9595 8.7107 43 1 -0.4959 -9.7431 9.3606 44 1 0.1522 -7.6948 8.1573 45 1 -0.7594 -3.1417 3.0705 46 1 0.1785 -1.1822 1.9512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000152831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = -109.751793 kcal Electronic energy + Delta-G solvation = -29983.700228 eV Core-core repulsion = 25801.509797 eV Total energy + Delta-G solvation = -4182.190431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.74321 -40.95199 -40.02653 -39.03774 -37.17510 -36.34760 -35.70673 -34.74831 -31.72645 -31.51636 -31.22763 -30.76395 -29.76696 -26.83043 -25.08225 -23.48968 -23.20438 -22.85962 -22.72721 -21.22100 -20.56698 -19.26772 -19.05135 -18.42185 -18.10786 -17.60780 -17.31464 -17.05153 -16.86475 -16.22854 -15.96325 -15.75895 -15.63630 -15.15998 -15.04715 -14.60447 -14.40052 -14.27576 -14.06686 -13.94664 -13.84848 -13.64444 -13.39636 -13.20310 -13.07123 -12.91033 -12.76636 -12.68027 -12.46555 -12.33502 -12.26349 -11.85296 -11.76960 -11.63806 -11.50942 -11.46189 -10.99323 -10.66867 -10.50598 -9.72153 -9.54582 -9.43273 -8.99562 -8.67813 -6.21963 0.50423 0.59875 0.86132 1.16482 1.26882 1.35453 1.42842 1.53469 1.86559 2.17875 2.18487 2.43228 2.67174 2.94917 3.64774 3.70707 3.74094 3.88247 4.09793 4.21172 4.27109 4.29613 4.36066 4.44996 4.48561 4.49933 4.56824 4.68527 4.72143 4.82238 4.94069 4.99233 5.08978 5.11429 5.18658 5.21877 5.25951 5.30400 5.48794 5.63119 5.64999 5.68468 5.70524 5.81831 5.89495 6.10303 6.12157 6.19885 6.35703 6.66711 6.81735 6.90991 7.02219 7.02926 7.51811 8.21005 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002184 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.336092 B =12818.527290 C =13859.259480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.048 3.952 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.080 3.920 10 C -0.235 4.235 11 C -0.092 4.092 12 C -0.004 4.004 13 N -0.642 5.642 14 C 0.495 3.505 15 O -0.574 6.574 16 C -0.116 4.116 17 C -0.013 4.013 18 H 0.065 0.935 19 C -0.114 4.114 20 C 0.481 3.519 21 O -0.537 6.537 22 O -0.519 6.519 23 C -0.079 4.079 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.086 4.086 30 C -0.200 4.200 31 H 0.292 0.708 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.418 0.582 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.423 0.577 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 -17.770 12.083 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.171 4.171 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.098 0.902 9 C 0.077 3.923 10 C -0.255 4.255 11 C -0.112 4.112 12 C -0.097 4.097 13 N -0.288 5.288 14 C 0.285 3.715 15 O -0.454 6.454 16 C -0.155 4.155 17 C -0.032 4.032 18 H 0.084 0.916 19 C -0.151 4.151 20 C 0.324 3.676 21 O -0.427 6.427 22 O -0.333 6.333 23 C -0.080 4.080 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.127 4.127 29 C -0.106 4.106 30 C -0.220 4.220 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.255 0.745 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.284 0.716 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.747 -17.183 12.320 22.881 hybrid contribution 0.432 1.138 0.492 1.313 sum -8.315 -16.045 12.811 22.152 Atomic orbital electron populations 1.69955 1.09516 1.31253 1.31810 1.26757 0.95041 1.04645 0.90667 0.85411 0.79651 0.76319 0.79728 1.18003 1.19148 1.18407 1.19722 1.05833 0.95284 1.32381 0.90188 1.17925 0.90773 0.93219 0.90379 1.20740 1.07464 0.92274 1.05063 1.20426 0.95391 0.98551 0.96812 1.17131 1.03410 0.86573 1.02616 1.42894 1.62345 1.14984 1.08543 1.21439 0.77492 0.90865 0.81730 1.90678 1.53609 1.34417 1.66679 1.21721 1.05534 0.95089 0.93198 1.19573 0.97846 0.91708 0.94075 0.91608 1.21669 1.02196 1.01782 0.89488 1.23696 0.76021 0.75108 0.92742 1.90694 1.43891 1.54105 1.54011 1.84525 1.55746 1.56654 1.36385 1.19657 0.96088 0.95569 0.96641 1.21267 0.96180 0.95762 1.00837 1.21433 1.00399 0.96486 0.95992 1.21440 0.94893 1.00528 0.97880 1.21344 0.98022 0.95566 1.00247 1.21083 0.99744 0.96192 0.95713 1.20457 0.99106 0.92406 0.98603 1.20638 1.04314 0.96771 1.00298 0.89758 0.87668 0.85026 0.74498 0.84913 0.85988 0.87381 0.85241 0.71563 0.83855 0.83774 0.84323 0.85298 0.87621 0.88437 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.38 11.77 21.82 0.26 -42.12 16 2 C 0.05 2.45 4.77 85.24 0.41 2.86 16 3 Si 0.97 38.47 29.66 68.60 2.03 40.50 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.50 -27.50 8.94 23.39 0.21 -27.29 16 8 H 0.08 4.19 8.02 -2.91 -0.02 4.17 16 9 C 0.08 4.37 5.57 -21.28 -0.12 4.25 16 10 C -0.24 -11.35 9.74 22.48 0.22 -11.13 16 11 C -0.09 -3.80 9.90 22.13 0.22 -3.59 16 12 C 0.00 -0.17 6.25 38.57 0.24 0.08 16 13 N -0.64 -19.36 5.30 -303.10 -1.61 -20.96 16 14 C 0.50 14.62 7.31 87.66 0.64 15.26 16 15 O -0.57 -22.62 11.62 -3.05 -0.04 -22.66 16 16 C -0.12 -2.11 4.92 29.85 0.15 -1.96 16 17 C -0.01 -0.28 1.34 -11.54 -0.02 -0.30 16 18 H 0.07 1.89 7.50 -2.39 -0.02 1.87 16 19 C -0.11 -2.57 4.97 29.85 0.15 -2.42 16 20 C 0.48 12.04 8.08 71.23 0.58 12.61 16 21 O -0.54 -15.98 14.95 21.97 0.33 -15.65 16 22 O -0.52 -10.67 13.42 -51.50 -0.69 -11.36 16 23 C -0.08 -1.59 3.74 -19.87 -0.07 -1.66 16 24 C -0.12 -1.89 8.71 22.27 0.19 -1.69 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 27 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 28 C -0.11 -2.42 8.64 22.27 0.19 -2.23 16 29 C -0.09 -4.23 8.59 22.14 0.19 -4.04 16 30 C -0.20 -11.03 8.74 22.48 0.20 -10.83 16 31 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 32 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 34 H 0.42 8.76 8.82 -92.71 -0.82 7.94 16 35 H 0.13 1.47 7.59 -2.38 -0.02 1.45 16 36 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 3.02 5.88 -2.38 -0.01 3.00 16 38 H 0.13 2.06 7.21 -2.39 -0.02 2.04 16 39 H 0.42 5.06 9.10 -74.06 -0.67 4.39 16 40 H 0.14 1.47 7.13 -2.91 -0.02 1.45 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.11 2.56 7.95 -2.91 -0.02 2.54 16 45 H 0.10 4.80 6.46 -2.91 -0.02 4.78 16 46 H 0.08 4.81 6.52 -2.91 -0.02 4.79 16 Total: -1.00 -74.88 387.29 3.88 -71.00 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -0.45 Total: 38.88 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 4.04 Total: -37.63 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.35 Total: -63.08 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.40 Total: -49.67 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -74.88 3.88 -71.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000152831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.754 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds