Wall clock time and date at job start Tue Mar 31 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86801 * 120.00132 * 2 1 4 4 H 1.48501 * 109.46708 * 274.98164 * 3 2 1 5 5 H 1.48494 * 109.47271 * 34.98094 * 3 2 1 6 6 H 1.48500 * 109.47059 * 154.98336 * 3 2 1 7 7 C 1.40122 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00021 * 173.81331 * 7 2 1 9 9 C 1.46173 * 120.00007 * 353.82469 * 7 2 1 10 10 O 1.21750 * 119.99851 * 6.07760 * 9 7 2 11 11 N 1.34770 * 120.00099 * 186.08323 * 9 7 2 12 12 C 1.39530 * 120.00255 * 185.13127 * 11 9 7 13 13 C 1.39033 * 120.08554 * 213.46882 * 12 11 9 14 14 C 1.38061 * 119.91638 * 180.22910 * 13 12 11 15 15 C 1.38330 * 120.08118 * 359.47648 * 14 13 12 16 16 S 1.76202 * 119.91357 * 180.25368 * 15 14 13 17 17 O 1.42108 * 106.40021 * 203.53860 * 16 15 14 18 18 O 1.42102 * 106.40206 * 336.45759 * 16 15 14 19 19 N 1.65598 * 107.21665 * 90.00152 * 16 15 14 20 20 C 1.38606 * 120.00679 * 65.00018 * 19 16 15 21 21 N 1.29697 * 124.94232 * 359.69033 * 20 19 16 22 22 C 1.32124 * 116.86226 * 179.81441 * 21 20 19 23 23 C 1.33328 * 114.57615 * 0.47755 * 22 21 20 24 24 S 1.70964 * 124.95633 * 179.97438 * 20 19 16 25 25 C 1.38331 * 120.16942 * 0.27245 * 15 14 13 26 26 C 1.38059 * 120.08253 * 359.97438 * 25 15 14 27 27 H 0.97006 * 119.99370 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00013 * 5.12887 * 11 9 7 29 29 H 1.08003 * 120.03795 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.95761 * 179.75304 * 14 13 12 31 31 H 0.97005 * 119.99624 * 244.99823 * 19 16 15 32 32 H 1.07999 * 122.71023 * 180.22727 * 22 21 20 33 33 H 1.08001 * 125.94634 * 179.75162 * 23 22 21 34 34 H 1.08002 * 119.95993 * 179.97438 * 25 15 14 35 35 H 1.08000 * 120.04383 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3826 2.1071 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5867 1.4120 0.5921 7 6 2.0070 -1.2135 0.0005 8 1 3.0822 -1.2163 -0.1002 9 6 1.2825 -2.4756 0.1373 10 8 0.0650 -2.4815 0.1394 11 7 1.9621 -3.6328 0.2611 12 6 1.2746 -4.8468 0.2839 13 6 1.7506 -5.9030 1.0526 14 6 1.0701 -7.1041 1.0689 15 6 -0.0898 -7.2540 0.3302 16 16 -0.9583 -8.7868 0.3595 17 8 -1.7178 -8.8406 -0.8404 18 8 -0.0086 -9.7793 0.7233 19 7 -2.0510 -8.7074 1.6013 20 6 -3.0941 -7.7962 1.5495 21 7 -3.3019 -6.9591 0.5809 22 6 -4.3499 -6.1626 0.6946 23 6 -5.0534 -6.3284 1.8150 24 16 -4.2903 -7.6070 2.7563 25 6 -0.5693 -6.2037 -0.4317 26 6 0.1084 -5.0012 -0.4570 27 1 -0.4849 0.8402 -0.0004 28 1 2.9293 -3.6218 0.3344 29 1 2.6533 -5.7850 1.6336 30 1 1.4415 -7.9263 1.6626 31 1 -1.9610 -9.2987 2.3650 32 1 -4.6130 -5.4333 -0.0572 33 1 -5.9374 -5.7753 2.0963 34 1 -1.4751 -6.3246 -1.0075 35 1 -0.2668 -4.1815 -1.0518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000375429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:53 Heat of formation + Delta-G solvation = -27.756790 kcal Electronic energy + Delta-G solvation = -25918.275225 eV Core-core repulsion = 21942.630654 eV Total energy + Delta-G solvation = -3975.644571 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 353.034 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.88110 -39.35618 -37.18475 -37.09770 -35.84192 -35.50229 -33.70729 -32.62450 -30.54417 -29.50389 -29.33488 -26.46474 -24.98571 -22.86445 -22.40518 -21.51130 -20.07472 -19.63912 -18.92397 -17.81876 -17.68552 -17.11567 -16.55020 -16.30954 -15.72650 -15.35753 -15.00903 -14.94699 -14.44747 -14.13869 -14.02764 -13.56368 -13.22545 -13.11461 -12.83128 -12.55722 -12.32115 -12.19116 -12.07530 -11.93580 -11.81207 -11.67717 -11.43844 -11.20274 -10.94032 -10.75559 -10.56067 -10.44801 -9.82956 -9.70171 -9.47886 -9.04995 -8.60611 -8.56345 -7.93827 -7.49712 -6.49786 -4.96769 0.16085 0.69522 1.12627 1.32503 1.53184 1.84458 2.70116 2.79793 2.98687 3.06740 3.10362 3.65005 3.85871 3.89089 4.15699 4.37820 4.39097 4.44544 5.15121 5.16956 5.27532 5.32226 5.43215 5.46494 5.77171 5.86574 6.06902 6.08607 6.24983 6.37790 6.42220 6.69698 6.87971 7.14746 7.22482 7.53633 7.57139 7.82040 7.98120 8.70683 8.99066 10.19429 10.40530 Molecular weight = 353.03amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.003138 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.900958 B = 8921.561073 C =10348.566590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.554 6.554 11 N -0.695 5.695 12 C 0.254 3.746 13 C -0.203 4.203 14 C 0.000 4.000 15 C -0.719 4.719 16 S 2.693 3.307 17 O -0.932 6.932 18 O -0.957 6.957 19 N -1.010 6.010 20 C 0.292 3.708 21 N -0.507 5.507 22 C 0.086 3.914 23 C -0.275 4.275 24 S 0.128 5.872 25 C 0.024 3.976 26 C -0.158 4.158 27 H 0.274 0.726 28 H 0.397 0.603 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.435 0.565 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.143 0.857 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -13.715 6.048 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.435 6.435 11 N -0.336 5.336 12 C 0.152 3.848 13 C -0.226 4.226 14 C -0.021 4.021 15 C -0.813 4.813 16 S 2.787 3.213 17 O -0.922 6.922 18 O -0.948 6.948 19 N -0.760 5.760 20 C -0.079 4.079 21 N -0.230 5.230 22 C -0.064 4.064 23 C -0.415 4.415 24 S 0.374 5.626 25 C 0.003 3.997 26 C -0.180 4.180 27 H 0.085 0.915 28 H 0.232 0.768 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.272 0.728 32 H 0.203 0.797 33 H 0.199 0.801 34 H 0.161 0.839 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.385 -14.615 5.827 16.980 hybrid contribution 1.024 1.979 0.161 2.234 sum -5.361 -12.636 5.988 14.975 Atomic orbital electron populations 1.69984 1.07243 1.28072 1.32935 1.25756 0.94725 1.00645 0.92439 0.86236 0.80235 0.80745 0.78964 1.19527 1.20133 1.18644 1.20861 0.94485 0.89088 1.52718 0.90768 1.18484 0.87529 0.81972 0.77526 1.90662 1.13528 1.85479 1.53838 1.44497 1.10132 1.04449 1.74496 1.18370 0.91813 0.85870 0.88765 1.20941 1.03863 0.94231 1.03521 1.20469 0.91509 0.96508 0.93590 1.29863 1.12462 1.21802 1.17137 1.01966 0.72549 0.74129 0.72639 1.93598 1.70120 1.86422 1.42033 1.93592 1.60403 1.57427 1.83357 1.53289 1.37470 1.44273 1.40943 1.23011 0.94642 0.94796 0.95429 1.66402 1.22263 1.08109 1.26191 1.21517 0.89206 0.97840 0.97822 1.26745 1.08990 1.06191 0.99618 1.83862 1.21284 1.34693 1.22743 1.20826 0.96637 0.90286 0.91923 1.21451 0.96936 0.98038 1.01566 0.91538 0.76845 0.85597 0.85147 0.72811 0.79727 0.80111 0.83908 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.08 11.85 55.55 0.66 -20.42 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.76 29.56 -169.99 -5.03 13.74 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.54 -14.03 9.53 -35.69 -0.34 -14.37 16 8 H 0.07 1.76 7.86 -52.49 -0.41 1.34 16 9 C 0.54 14.26 7.47 -13.08 -0.10 14.16 16 10 O -0.55 -16.55 12.70 5.14 0.07 -16.49 16 11 N -0.69 -14.87 5.32 -11.19 -0.06 -14.93 16 12 C 0.25 5.16 6.28 -83.77 -0.53 4.64 16 13 C -0.20 -3.41 9.97 -39.35 -0.39 -3.80 16 14 C 0.00 0.00 9.51 -39.61 -0.38 -0.38 16 15 C -0.72 -11.83 5.86 -39.51 -0.23 -12.06 16 16 S 2.69 38.85 5.45 -107.50 -0.59 38.27 16 17 O -0.93 -16.04 16.42 -57.17 -0.94 -16.98 16 18 O -0.96 -14.48 17.27 -57.17 -0.99 -15.47 16 19 N -1.01 -11.47 5.85 29.77 0.17 -11.30 16 20 C 0.29 3.73 7.89 -87.68 -0.69 3.04 16 21 N -0.51 -7.48 7.68 -15.21 -0.12 -7.60 16 22 C 0.09 1.07 11.34 -19.14 -0.22 0.85 16 23 C -0.28 -2.76 11.34 29.02 0.33 -2.43 16 24 S 0.13 1.23 23.22 -107.50 -2.50 -1.26 16 25 C 0.02 0.44 8.59 -39.61 -0.34 0.10 16 26 C -0.16 -3.33 8.65 -39.35 -0.34 -3.67 16 27 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 28 H 0.40 7.14 8.79 -40.82 -0.36 6.78 16 29 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 30 H 0.13 1.64 7.61 -52.49 -0.40 1.24 16 31 H 0.44 3.23 8.95 -34.47 -0.31 2.92 16 32 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 2.57 6.82 -52.49 -0.36 2.21 16 35 H 0.15 3.47 6.40 -52.49 -0.34 3.14 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -36.10 337.48 -10.12 -46.22 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -2.58 Total: 12.92 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.32 Total: -11.78 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.66 Total: -54.25 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -1.86 Total: -48.93 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 40.09 SS G_CDS: -3.08 Total: 37.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.10 -10.12 -46.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000375429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.465 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds