Wall clock time and date at job start Tue Mar 31 2020 04:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31116 * 1 3 3 Si 1.86803 * 120.00308 * 2 1 4 4 H 1.48506 * 109.46771 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47340 * 119.99511 * 3 2 1 6 6 H 1.48498 * 109.47046 * 239.99940 * 3 2 1 7 7 C 1.39318 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00385 * 154.80425 * 7 2 1 9 9 N 1.36783 * 119.99691 * 334.80813 * 7 2 1 10 10 C 1.34953 * 119.95631 * 319.87916 * 9 7 2 11 11 O 1.22041 * 120.57634 * 359.97438 * 10 9 7 12 12 C 1.40279 * 118.83645 * 179.97438 * 10 9 7 13 13 C 1.38817 * 118.73640 * 0.02562 * 12 10 9 14 14 C 1.48075 * 120.10854 * 180.02562 * 13 12 10 15 15 C 1.39522 * 120.14632 * 56.62439 * 14 13 12 16 16 C 1.37933 * 119.87797 * 179.73801 * 15 14 13 17 17 C 1.38405 * 120.16652 * 0.56348 * 16 15 14 18 18 C 1.38283 * 120.29187 * 359.69055 * 17 16 15 19 19 C 1.38146 * 120.12221 * 0.02691 * 18 17 16 20 20 Cl 1.73602 * 120.08615 * 180.02562 * 19 18 17 21 21 N 1.34036 * 119.77941 * 359.97438 * 13 12 10 22 22 C 1.31508 * 121.20788 * 359.71566 * 21 13 12 23 23 C 1.47660 * 119.32530 * 180.27729 * 22 21 13 24 24 C 1.39685 * 120.14837 * 140.17201 * 23 22 21 25 25 C 1.37934 * 119.83629 * 179.72350 * 24 23 22 26 26 C 1.38380 * 120.15771 * 0.57199 * 25 24 23 27 27 C 1.38390 * 120.30977 * 359.70384 * 26 25 24 28 28 C 1.37925 * 120.15580 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99599 * 176.24292 * 1 2 3 30 30 H 1.08003 * 120.62952 * 180.02562 * 12 10 9 31 31 H 1.08005 * 120.05766 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.91397 * 180.27074 * 16 15 14 33 33 H 1.07995 * 119.85266 * 179.71192 * 17 16 15 34 34 H 1.07992 * 119.93944 * 180.02562 * 18 17 16 35 35 H 1.07992 * 120.08316 * 0.02562 * 24 23 22 36 36 H 1.08001 * 119.91702 * 180.29874 * 25 24 23 37 37 H 1.07994 * 119.84975 * 179.71767 * 26 25 24 38 38 H 1.07998 * 119.92045 * 180.02562 * 27 26 25 39 39 H 1.07990 * 120.07978 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 14 2.2453 1.6177 0.0000 4 1 1.2802 2.7465 -0.0006 5 1 3.0989 1.6964 1.2126 6 1 3.0990 1.6963 -1.2125 7 6 2.0078 -1.2065 0.0005 8 1 3.0107 -1.2512 -0.3976 9 7 1.4214 -2.3345 0.5053 10 6 0.6728 -2.2611 1.6257 11 8 0.5127 -1.1945 2.1967 12 6 0.0819 -3.4324 2.1225 13 6 0.2897 -4.6248 1.4429 14 6 -0.3201 -5.8793 1.9401 15 6 -1.7010 -5.9635 2.1206 16 6 -2.2637 -7.1365 2.5789 17 6 -1.4609 -8.2254 2.8710 18 6 -0.0909 -8.1478 2.6998 19 6 0.4848 -6.9809 2.2359 20 17 2.2047 -6.8847 2.0205 21 7 1.0433 -4.6368 0.3345 22 6 1.5897 -3.5344 -0.1298 23 6 2.4074 -3.5942 -1.3579 24 6 2.3180 -2.5765 -2.3105 25 6 3.0890 -2.6360 -3.4527 26 6 3.9406 -3.7066 -3.6617 27 6 4.0298 -4.7212 -2.7248 28 6 3.2697 -4.6714 -1.5750 29 1 -0.4849 -0.8383 -0.0550 30 1 -0.5232 -3.4069 3.0168 31 1 -2.3286 -5.1134 1.8974 32 1 -3.3331 -7.2038 2.7147 33 1 -1.9064 -9.1398 3.2340 34 1 0.5301 -9.0011 2.9290 35 1 1.6507 -1.7427 -2.1508 36 1 3.0245 -1.8474 -4.1878 37 1 4.5386 -3.7504 -4.5599 38 1 4.6969 -5.5536 -2.8940 39 1 3.3406 -5.4636 -0.8445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000495007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:25 Heat of formation + Delta-G solvation = 37.446191 kcal Electronic energy + Delta-G solvation = -27950.921527 eV Core-core repulsion = 24041.875717 eV Total energy + Delta-G solvation = -3909.045810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 352.072 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61623 -40.28797 -39.81879 -38.12553 -37.35541 -36.74606 -34.35215 -33.00112 -32.01687 -31.78507 -31.56863 -30.25496 -27.66230 -25.56150 -25.05709 -23.55596 -23.43260 -22.53723 -22.20266 -20.76473 -19.13008 -18.56090 -17.81160 -17.62828 -17.10490 -16.91920 -16.32993 -16.29205 -15.69620 -15.68099 -15.52074 -15.06910 -14.85770 -14.67925 -14.40042 -14.36292 -14.24679 -14.10832 -13.71477 -13.29245 -12.95757 -12.73491 -12.47298 -12.43555 -12.40149 -12.19972 -12.03302 -11.92114 -11.82156 -11.64593 -11.00438 -10.96852 -10.55767 -9.97021 -9.90795 -9.80053 -9.66777 -9.31884 -8.98873 -6.68095 -0.56061 0.00439 0.22332 0.56040 0.60267 1.14050 1.19724 1.41562 1.53812 1.71690 2.01950 2.40961 2.55159 2.66092 2.85684 2.94500 3.24030 3.52551 3.82075 4.05654 4.09410 4.10232 4.19271 4.26707 4.34802 4.36771 4.41886 4.50537 4.62002 4.67366 4.78317 4.85390 5.00454 5.07146 5.20358 5.24608 5.27714 5.33854 5.42017 5.49062 5.58149 5.62942 5.70775 5.82099 5.97848 6.11152 6.29457 6.60022 7.08803 7.41373 8.01089 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.004542 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.595306 B = 6162.695798 C = 8038.755597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.012 3.988 3 Si 1.120 2.880 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.230 1.230 7 C -0.434 4.434 8 H 0.119 0.881 9 N -0.327 5.327 10 C 0.448 3.552 11 O -0.602 6.602 12 C -0.333 4.333 13 C 0.196 3.804 14 C -0.048 4.048 15 C -0.101 4.101 16 C -0.108 4.108 17 C -0.090 4.090 18 C -0.113 4.113 19 C -0.025 4.025 20 Cl -0.073 7.073 21 N -0.518 5.518 22 C 0.332 3.668 23 C -0.061 4.061 24 C -0.083 4.083 25 C -0.131 4.131 26 C -0.094 4.094 27 C -0.127 4.127 28 C -0.083 4.083 29 H 0.260 0.740 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -15.709 -4.206 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.203 4.203 3 Si 0.936 3.064 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.153 1.153 7 C -0.562 4.562 8 H 0.136 0.864 9 N -0.023 5.023 10 C 0.256 3.744 11 O -0.488 6.488 12 C -0.360 4.360 13 C 0.063 3.937 14 C -0.050 4.050 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.052 4.052 20 Cl -0.044 7.044 21 N -0.241 5.241 22 C 0.077 3.923 23 C -0.063 4.063 24 C -0.103 4.103 25 C -0.149 4.149 26 C -0.112 4.112 27 C -0.145 4.145 28 C -0.102 4.102 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.700 -14.097 -4.138 14.938 hybrid contribution -0.269 -0.429 1.099 1.210 sum 2.431 -14.527 -3.039 15.039 Atomic orbital electron populations 1.70570 1.09014 1.30996 1.32511 1.28211 0.95389 1.06341 0.90334 0.82970 0.74654 0.69558 0.79193 1.20109 1.20624 1.15334 1.21085 1.02793 0.87452 1.44871 0.86376 1.43088 1.32930 1.09115 1.17150 1.17494 0.84627 0.90983 0.81332 1.90798 1.65472 1.32253 1.60283 1.22615 1.13643 0.91979 1.07760 1.19747 0.91685 0.92085 0.90168 1.18425 0.94118 0.90608 1.01802 1.21376 0.91811 0.99952 0.98897 1.21538 1.02125 0.91514 0.97398 1.21673 0.91823 1.00034 0.97287 1.21349 0.96676 0.95747 0.99383 1.21199 0.84769 0.95652 1.03619 1.98357 1.11765 1.98479 1.95804 1.68428 1.15659 1.24819 1.15217 1.21892 0.96243 0.81858 0.92331 1.18186 0.98591 0.98192 0.91370 1.21477 0.98661 0.96794 0.93388 1.21353 0.96874 1.00002 0.96663 1.21687 0.97264 0.92554 0.99685 1.21378 0.99646 1.00390 0.93089 1.21277 0.94538 0.95804 0.98609 0.92977 0.84804 0.85630 0.81727 0.80669 0.82315 0.86991 0.83456 0.81978 0.82537 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.91 12.26 21.72 0.27 -47.64 16 2 C 0.01 0.63 4.15 85.06 0.35 0.98 16 3 Si 1.12 46.79 29.99 68.60 2.06 48.85 16 4 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.23 -7.89 7.11 99.48 0.71 -7.18 16 7 C -0.43 -23.15 6.02 84.18 0.51 -22.64 16 8 H 0.12 5.92 6.85 -2.91 -0.02 5.90 16 9 N -0.33 -17.83 2.47 -468.81 -1.16 -18.98 16 10 C 0.45 26.23 6.15 84.71 0.52 26.75 16 11 O -0.60 -39.57 14.79 -5.45 -0.08 -39.65 16 12 C -0.33 -16.88 9.66 22.91 0.22 -16.66 16 13 C 0.20 8.72 5.59 41.56 0.23 8.95 16 14 C -0.05 -1.71 5.56 -20.03 -0.11 -1.82 16 15 C -0.10 -2.96 9.63 22.51 0.22 -2.74 16 16 C -0.11 -2.15 10.03 22.24 0.22 -1.93 16 17 C -0.09 -1.53 10.04 22.32 0.22 -1.31 16 18 C -0.11 -2.47 9.82 22.26 0.22 -2.25 16 19 C -0.03 -0.78 6.35 22.58 0.14 -0.63 16 20 Cl -0.07 -2.39 27.38 -2.72 -0.07 -2.46 16 21 N -0.52 -23.55 9.17 -176.91 -1.62 -25.17 16 22 C 0.33 15.97 7.18 136.34 0.98 16.95 16 23 C -0.06 -2.50 5.24 -20.09 -0.11 -2.61 16 24 C -0.08 -3.18 7.89 22.55 0.18 -3.00 16 25 C -0.13 -3.69 10.03 22.23 0.22 -3.47 16 26 C -0.09 -2.14 10.04 22.34 0.22 -1.91 16 27 C -0.13 -3.18 10.03 22.23 0.22 -2.95 16 28 C -0.08 -2.77 9.60 22.54 0.22 -2.56 16 29 H 0.26 16.31 7.32 -92.71 -0.68 15.63 16 30 H 0.13 6.45 8.06 -2.91 -0.02 6.43 16 31 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.11 4.94 6.32 -2.91 -0.02 4.92 16 36 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 39 H 0.12 4.06 8.02 -2.92 -0.02 4.04 16 Total: -1.00 -77.38 353.37 5.27 -72.11 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.19 Total: 25.80 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.69 Total: -12.85 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -2.51 Total: -91.80 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.08 Total: -39.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.06 Total: 48.85 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.07 Total: -2.46 kcal Total: -77.38 5.27 -72.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000495007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.555 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds