Wall clock time and date at job start Tue Mar 31 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48498 * 109.47384 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47196 * 119.99996 * 3 2 1 7 7 C 1.39862 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99676 * 190.96339 * 7 2 1 9 9 C 1.41132 * 120.00246 * 10.95773 * 7 2 1 10 10 C 1.40884 * 120.15840 * 208.86375 * 9 7 2 11 11 C 1.36335 * 119.84296 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15560 * 359.97438 * 11 10 9 13 13 N 1.38862 * 119.84285 * 179.97438 * 12 11 10 14 14 S 1.65601 * 120.00040 * 104.48349 * 13 12 11 15 15 O 1.42099 * 106.40447 * 182.74846 * 14 13 12 16 16 O 1.42097 * 106.40246 * 49.82460 * 14 13 12 17 17 C 1.76200 * 107.21974 * 296.28656 * 14 13 12 18 18 C 1.39379 * 119.50443 * 266.06173 * 17 14 13 19 19 C 1.36088 * 120.98442 * 179.97438 * 18 17 14 20 20 C 1.40538 * 119.65750 * 0.04338 * 19 18 17 21 21 C 1.40543 * 121.28566 * 179.97438 * 20 19 18 22 22 C 1.36092 * 119.65553 * 179.97438 * 21 20 19 23 23 C 1.39374 * 120.98785 * 359.96093 * 22 21 20 24 24 C 1.36098 * 120.99201 * 0.05883 * 23 22 21 25 25 C 1.40534 * 119.65122 * 359.95978 * 24 23 22 26 26 C 1.36098 * 119.50380 * 86.08034 * 17 14 13 27 27 C 1.39570 * 120.31728 * 0.25511 * 12 11 10 28 28 C 1.36334 * 120.15704 * 359.48344 * 27 12 11 29 29 H 0.96992 * 120.00204 * 359.97438 * 1 2 3 30 30 H 1.08009 * 120.08182 * 359.97438 * 10 9 7 31 31 H 1.07998 * 119.92692 * 179.97438 * 11 10 9 32 32 H 0.96999 * 120.00085 * 284.49036 * 13 12 11 33 33 H 1.07996 * 119.50491 * 0.02562 * 18 17 14 34 34 H 1.08002 * 120.17148 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.17110 * 359.95532 * 21 20 19 36 36 H 1.07993 * 119.50578 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.50420 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.17034 * 180.23729 * 24 23 22 39 39 H 1.07997 * 120.17089 * 359.95712 * 26 17 14 40 40 H 1.08000 * 119.91802 * 179.71872 * 27 12 11 41 41 H 1.08000 * 120.07839 * 180.23268 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6966 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2112 -0.0005 8 1 3.0737 -1.2197 0.1773 9 6 1.3222 -2.4223 -0.2334 10 6 1.7968 -3.6240 0.3283 11 6 1.1292 -4.7903 0.0987 12 6 -0.0222 -4.7955 -0.6902 13 7 -0.6968 -5.9873 -0.9202 14 16 -2.1158 -6.3020 -0.1265 15 8 -2.5165 -7.6064 -0.5229 16 8 -2.9338 -5.1526 -0.2960 17 6 -1.7418 -6.3973 1.5927 18 6 -1.4742 -7.6378 2.1692 19 6 -1.1815 -7.7462 3.4938 20 6 -1.1484 -6.5923 4.2954 21 6 -0.8505 -6.6647 5.6670 22 6 -0.8271 -5.5261 6.4120 23 6 -1.0937 -4.2856 5.8353 24 6 -1.3864 -4.1770 4.5106 25 6 -1.4203 -5.3309 3.7092 26 6 -1.7189 -5.2587 2.3378 27 6 -0.4955 -3.6096 -1.2537 28 6 0.1591 -2.4351 -1.0282 29 1 -0.4850 0.8400 0.0004 30 1 2.6879 -3.6215 0.9386 31 1 1.4920 -5.7124 0.5282 32 1 -0.3369 -6.6354 -1.5457 33 1 -1.4988 -8.5260 1.5554 34 1 -0.9766 -8.7141 3.9270 35 1 -0.6416 -7.6190 6.1274 36 1 -0.5975 -5.5845 7.4656 37 1 -1.0682 -3.3972 6.4489 38 1 -1.5871 -3.2086 4.0767 39 1 -1.9280 -4.3044 1.8773 40 1 -1.3845 -3.6218 -1.8669 41 1 -0.2104 -1.5176 -1.4619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000582536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:24 Heat of formation + Delta-G solvation = -11.803312 kcal Electronic energy + Delta-G solvation = -28200.569143 eV Core-core repulsion = 24329.545853 eV Total energy + Delta-G solvation = -3871.023290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.087 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.30882 -38.05942 -36.77184 -36.49954 -35.42564 -34.80360 -32.85580 -32.79069 -30.46049 -29.64114 -29.27004 -28.78916 -24.79932 -23.85541 -23.14746 -21.96918 -21.13243 -20.92013 -19.32118 -17.87876 -17.46390 -17.28778 -17.16507 -16.65050 -16.46699 -15.37191 -15.03305 -14.80323 -14.59499 -14.07724 -13.82258 -13.75022 -13.65407 -13.40103 -13.15433 -12.87626 -12.38823 -12.26176 -12.16808 -11.71969 -11.66706 -11.61613 -11.56159 -11.50549 -11.46793 -11.22233 -10.91246 -10.86759 -10.70241 -10.46715 -10.11522 -10.04533 -9.84852 -9.37735 -8.90614 -8.78385 -7.99211 -7.69897 -7.39867 -6.88757 -4.53284 0.36720 0.77399 0.91444 2.00206 2.56285 2.76637 2.97502 2.99439 3.01034 3.06518 3.52731 3.81538 3.97868 4.18416 4.46395 4.50310 4.75744 4.80194 4.87112 5.10567 5.16571 5.27321 5.34811 5.40435 5.49163 5.72715 5.88071 5.92058 6.10012 6.12067 6.17786 6.26122 6.26334 6.31087 6.44107 6.47957 6.79573 6.83973 6.90888 6.93613 7.05988 7.14717 7.36456 7.46870 7.81415 7.90315 8.03719 8.12113 8.47487 8.70921 8.80319 10.03850 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.009353 B = 0.004225 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.990637 B = 6625.924744 C = 8708.465036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.450 4.450 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.221 4.221 11 C -0.073 4.073 12 C -0.033 4.033 13 N -1.030 6.030 14 S 2.675 3.325 15 O -0.980 6.980 16 O -0.953 6.953 17 C -0.667 4.667 18 C -0.039 4.039 19 C -0.132 4.132 20 C -0.013 4.013 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.077 4.077 25 C -0.078 4.078 26 C 0.038 3.962 27 C -0.076 4.076 28 C -0.159 4.159 29 H 0.284 0.716 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.407 0.593 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.100 0.900 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -8.572 8.382 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.242 4.242 11 C -0.094 4.094 12 C -0.129 4.129 13 N -0.785 5.785 14 S 2.767 3.233 15 O -0.970 6.970 16 O -0.942 6.942 17 C -0.753 4.753 18 C -0.058 4.058 19 C -0.150 4.150 20 C -0.013 4.013 21 C -0.144 4.144 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.095 4.095 25 C -0.079 4.079 26 C 0.019 3.981 27 C -0.097 4.097 28 C -0.180 4.180 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.118 0.882 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.385 -8.457 8.140 11.978 hybrid contribution 1.048 0.491 0.537 1.276 sum -1.337 -7.966 8.677 11.855 Atomic orbital electron populations 1.69811 1.07457 1.29703 1.34189 1.25968 0.94898 1.01484 0.92287 0.86279 0.80036 0.79908 0.80051 1.18723 1.20174 1.18935 1.19619 0.96178 0.90596 1.41534 0.90188 1.17748 0.91124 0.92064 0.87351 1.20676 1.03367 0.93145 1.06984 1.20502 0.94854 0.96913 0.97156 1.16637 0.99890 0.84068 1.12354 1.52198 1.43896 1.26682 1.55704 1.02883 0.73837 0.73048 0.73489 1.93511 1.81365 1.40215 1.81945 1.93584 1.65220 1.50575 1.84869 1.30638 1.18410 0.99329 1.26950 1.20427 0.94169 0.95639 0.95538 1.20975 1.02589 0.97490 0.93995 1.18236 0.96284 0.93001 0.93801 1.21018 1.01671 0.98961 0.92702 1.20934 0.97990 0.92595 0.99947 1.20874 1.01000 0.97812 0.95324 1.21262 0.96485 0.97938 0.93830 1.18203 1.02313 0.93381 0.93966 1.21096 0.86657 0.97936 0.92452 1.20783 0.98434 0.92490 0.98037 1.21043 0.98659 0.96576 1.01697 0.90449 0.88615 0.89085 0.75597 0.84608 0.85157 0.85482 0.85891 0.85654 0.84644 0.83367 0.88228 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.05 10.85 55.54 0.60 -18.45 16 2 C 0.07 1.69 5.24 -17.34 -0.09 1.60 16 3 Si 0.91 17.50 29.57 -169.99 -5.03 12.47 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.02 9.04 -37.88 -0.34 -11.36 16 8 H 0.08 1.87 7.87 -52.49 -0.41 1.46 16 9 C 0.12 2.96 5.55 -106.80 -0.59 2.36 16 10 C -0.22 -4.97 9.74 -39.27 -0.38 -5.35 16 11 C -0.07 -1.50 9.90 -39.77 -0.39 -1.89 16 12 C -0.03 -0.68 5.78 -83.68 -0.48 -1.16 16 13 N -1.03 -17.79 5.65 32.51 0.18 -17.60 16 14 S 2.67 47.43 5.69 -107.50 -0.61 46.82 16 15 O -0.98 -18.01 17.14 -57.17 -0.98 -18.99 16 16 O -0.95 -19.76 16.38 -57.17 -0.94 -20.70 16 17 C -0.67 -11.14 5.84 -39.93 -0.23 -11.38 16 18 C -0.04 -0.57 9.42 -39.93 -0.38 -0.94 16 19 C -0.13 -1.73 9.77 -39.49 -0.39 -2.12 16 20 C -0.01 -0.18 5.74 -106.83 -0.61 -0.80 16 21 C -0.13 -1.44 9.77 -39.48 -0.39 -1.83 16 22 C -0.10 -1.04 9.95 -39.93 -0.40 -1.43 16 23 C -0.13 -1.56 9.95 -39.93 -0.40 -1.96 16 24 C -0.08 -1.09 9.77 -39.49 -0.39 -1.48 16 25 C -0.08 -1.23 5.74 -106.83 -0.61 -1.84 16 26 C 0.04 0.65 9.21 -39.48 -0.36 0.29 16 27 C -0.08 -1.72 9.23 -39.77 -0.37 -2.08 16 28 C -0.16 -3.89 8.60 -39.27 -0.34 -4.23 16 29 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 30 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.41 5.89 8.95 -34.47 -0.31 5.58 16 33 H 0.14 1.74 7.48 -52.49 -0.39 1.35 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.15 2.67 7.64 -52.49 -0.40 2.27 16 40 H 0.10 2.17 7.96 -52.49 -0.42 1.75 16 41 H 0.12 3.13 6.22 -52.49 -0.33 2.81 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -29.51 365.67 -12.75 -42.27 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -4.35 Total: 14.27 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: -7.14 Total: -45.59 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.79 Total: -36.05 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.92 Total: -39.69 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.61 Total: 46.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.51 -12.75 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000582536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.465 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds